Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01635
(321 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58667|LEUD1_METJA 3-isopropylmalate dehydratase small s... 32 0.59
sp|O33102|DNLJ_MYCLE DNA ligase (Polydeoxyribonucleotide sy... 28 8.5
sp|Q8EM53|PYRG_OCEIH CTP synthase (UTP--ammonia ligase) (CT... 28 8.5
>sp|Q58667|LEUD1_METJA 3-isopropylmalate dehydratase small subunit 1 (Isopropylmalate
isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1)
Length = 170
Score = 31.6 bits (70), Expect = 0.59
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +3
Query: 30 IVDTEVDGDSNVIKIAFDTKEIIINCRSLTVQCYQDKKLESIVL 161
I +T+ D ++++I D +EI+I ++ T++C K LE +L
Sbjct: 104 IANTDEIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLEREIL 147
>sp|O33102|DNLJ_MYCLE DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
Length = 694
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 137 QEVREHCFRYYSTLVPLLDASKGIDFAIEAIFEKIVV 247
+EVREH FRYY P++ D +A+ +++ V
Sbjct: 22 EEVREHQFRYYVRDAPIIS-----DAEFDALLDRLTV 53
>sp|Q8EM53|PYRG_OCEIH CTP synthase (UTP--ammonia ligase) (CTP synthetase)
Length = 535
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 104 LSFIDGTMLSRQEVREHCFRYYSTLVPLLDASKGIDFAIEAI 229
+ +I+ +LS ++++E + LVP +GID IEAI
Sbjct: 326 IHWINSELLSEEQIKEELSKVDGVLVPGGFGDRGIDGKIEAI 367
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,401,664
Number of Sequences: 369166
Number of extensions: 611198
Number of successful extensions: 1593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)