Planarian EST Database


Dr_sW_008_A12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_008_A12
         (321 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58667|LEUD1_METJA  3-isopropylmalate dehydratase small s...    32   0.59 
sp|O33102|DNLJ_MYCLE  DNA ligase (Polydeoxyribonucleotide sy...    28   8.5  
sp|Q8EM53|PYRG_OCEIH  CTP synthase (UTP--ammonia ligase) (CT...    28   8.5  
>sp|Q58667|LEUD1_METJA 3-isopropylmalate dehydratase small subunit 1 (Isopropylmalate
           isomerase 1) (Alpha-IPM isomerase 1) (IPMI 1)
          Length = 170

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +3

Query: 30  IVDTEVDGDSNVIKIAFDTKEIIINCRSLTVQCYQDKKLESIVL 161
           I +T+   D ++++I  D +EI+I  ++ T++C   K LE  +L
Sbjct: 104 IANTDEIKDGDIVEIDLDKEEIVITNKNKTIKCETPKGLEREIL 147
>sp|O33102|DNLJ_MYCLE DNA ligase (Polydeoxyribonucleotide synthase [NAD+])
          Length = 694

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 137 QEVREHCFRYYSTLVPLLDASKGIDFAIEAIFEKIVV 247
           +EVREH FRYY    P++      D   +A+ +++ V
Sbjct: 22  EEVREHQFRYYVRDAPIIS-----DAEFDALLDRLTV 53
>sp|Q8EM53|PYRG_OCEIH CTP synthase (UTP--ammonia ligase) (CTP synthetase)
          Length = 535

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 104 LSFIDGTMLSRQEVREHCFRYYSTLVPLLDASKGIDFAIEAI 229
           + +I+  +LS ++++E   +    LVP     +GID  IEAI
Sbjct: 326 IHWINSELLSEEQIKEELSKVDGVLVPGGFGDRGIDGKIEAI 367
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,401,664
Number of Sequences: 369166
Number of extensions: 611198
Number of successful extensions: 1593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)