Planaria EST Database


DrC_01632

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01632
         (313 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q16820|MEP1B_HUMAN  Meprin A beta-subunit precursor (Endo...    31   0.78 
sp|Q01628|IFM3_HUMAN  Interferon-induced transmembrane prote...    31   1.0  
sp|O00463|TRAF5_HUMAN  TNF receptor-associated factor 5 (RIN...    30   2.3  
sp|Q01629|IFM2_HUMAN  Interferon-induced transmembrane prote...    29   2.9  
sp|P70191|TRAF5_MOUSE  TNF receptor-associated factor 5            29   2.9  
sp|P35344|CXCR2_RABIT  High affinity interleukin-8 receptor ...    28   5.0  
sp|P57528|EX5C_BUCAI  Exodeoxyribonuclease V gamma chain           28   6.6  
sp|Q13114|TRAF3_HUMAN  TNF receptor-associated factor 3 (CD4...    28   8.6  
sp|Q60803|TRAF3_MOUSE  TNF receptor-associated factor 3 (CD4...    28   8.6  
sp|P02442|KRA3_CAPHI  Keratin, high-sulfur matrix protein, I...    28   8.6  
>sp|Q16820|MEP1B_HUMAN Meprin A beta-subunit precursor (Endopeptidase-2)
           (N-benzoyl-L-tyrosyl-P-amino-benzoic acid hydrolase beta
           subunit) (PABA peptide hydrolase) (PPH beta)
          Length = 701

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 3   MYLRLGNINNELNIWFVIWSGAFDGDLKWPC 95
           +YL L ++ N   I+F + SGA D  L+WPC
Sbjct: 463 IYLNLAHVTNA-GIYFHLISGANDDQLQWPC 492
>sp|Q01628|IFM3_HUMAN Interferon-induced transmembrane protein 3 (Interferon-inducible
           protein 1-8U)
          Length = 133

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 88  HLRSPSNAPDHMTNQIFNSLFIFP 17
           H+RS ++ PDH+   +FN+LF+ P
Sbjct: 47  HIRSETSVPDHVVWSLFNTLFMNP 70
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
          Length = 557

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 30  NELNIWFVIWSGAFDGDLKWPCQTDVTIYI 119
           + L+++FV+  G FD  L+WP +  VT+ +
Sbjct: 457 SHLSLYFVVMRGEFDSLLQWPFRQRVTLML 486
>sp|Q01629|IFM2_HUMAN Interferon-induced transmembrane protein 2 (Interferon-inducible
           protein 1-8D)
          Length = 132

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 88  HLRSPSNAPDHMTNQIFNSLFI 23
           H+RS ++ PDH+   +FN+LF+
Sbjct: 46  HIRSETSVPDHVVWSLFNTLFM 67
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5
          Length = 558

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 36  LNIWFVIWSGAFDGDLKWPCQTDVTIYI 119
           L+++FV+  G FD  L+WP +  VT+ +
Sbjct: 459 LSLYFVVMRGEFDSLLQWPFRQRVTLML 486
>sp|P35344|CXCR2_RABIT High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2) (GRO/MGSA
           receptor)
          Length = 358

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 183 LVLLFCMIFLLMCIFSHHSMQKYK 112
           LV+LFC +F L  +F  H  QK++
Sbjct: 223 LVMLFCYVFTLRTLFQAHMGQKHR 246
>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
          Length = 1070

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -3

Query: 308 YINLFK------TFSFKFYNANQFAVYIDKILFRQIRMRNFDWIKQIIW 180
           Y+N+F       + +FKFY+ N F   + KI+  +  ++N      IIW
Sbjct: 45  YLNIFIAEKKGISANFKFYHPNDFIWKLFKIILSKKELKNIFTHSMIIW 93
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 (CD40 receptor associated factor
           1) (CRAF1) (CD40 binding protein) (CD40BP) (LMP1
           associated protein) (LAP1) (CAP-1)
          Length = 568

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 36  LNIWFVIWSGAFDGDLKWPCQTDVTIYI 119
           L+++FVI  G +D  L WP +  VT+ +
Sbjct: 471 LSLFFVIMRGEYDALLPWPFKQKVTLML 498
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 (CD40 receptor associated factor
           1) (CRAF1) (TRAFAMN)
          Length = 567

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 36  LNIWFVIWSGAFDGDLKWPCQTDVTIYI 119
           L+++FVI  G +D  L WP +  VT+ +
Sbjct: 470 LSLFFVIMRGEYDALLPWPFKQKVTLML 497
>sp|P02442|KRA3_CAPHI Keratin, high-sulfur matrix protein, IIIA3 (M2.6 protein)
          Length = 132

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 125 CRNINCNISLTGPLKITIECTRPYDKP 45
           CR ++C  +++ P+     CTRP  +P
Sbjct: 30  CRPVSCQTTVSRPVTFVSRCTRPICEP 56
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,081,482
Number of Sequences: 369166
Number of extensions: 490874
Number of successful extensions: 1130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)