Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_P12
(313 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16820|MEP1B_HUMAN Meprin A beta-subunit precursor (Endo... 31 0.78
sp|Q01628|IFM3_HUMAN Interferon-induced transmembrane prote... 31 1.0
sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RIN... 30 2.3
sp|Q01629|IFM2_HUMAN Interferon-induced transmembrane prote... 29 2.9
sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5 29 2.9
sp|P35344|CXCR2_RABIT High affinity interleukin-8 receptor ... 28 5.0
sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain 28 6.6
sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 (CD4... 28 8.6
sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 (CD4... 28 8.6
sp|P02442|KRA3_CAPHI Keratin, high-sulfur matrix protein, I... 28 8.6
>sp|Q16820|MEP1B_HUMAN Meprin A beta-subunit precursor (Endopeptidase-2)
(N-benzoyl-L-tyrosyl-P-amino-benzoic acid hydrolase beta
subunit) (PABA peptide hydrolase) (PPH beta)
Length = 701
Score = 31.2 bits (69), Expect = 0.78
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 3 MYLRLGNINNELNIWFVIWSGAFDGDLKWPC 95
+YL L ++ N I+F + SGA D L+WPC
Sbjct: 463 IYLNLAHVTNA-GIYFHLISGANDDQLQWPC 492
>sp|Q01628|IFM3_HUMAN Interferon-induced transmembrane protein 3 (Interferon-inducible
protein 1-8U)
Length = 133
Score = 30.8 bits (68), Expect = 1.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 88 HLRSPSNAPDHMTNQIFNSLFIFP 17
H+RS ++ PDH+ +FN+LF+ P
Sbjct: 47 HIRSETSVPDHVVWSLFNTLFMNP 70
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 (RING finger protein 84)
Length = 557
Score = 29.6 bits (65), Expect = 2.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 30 NELNIWFVIWSGAFDGDLKWPCQTDVTIYI 119
+ L+++FV+ G FD L+WP + VT+ +
Sbjct: 457 SHLSLYFVVMRGEFDSLLQWPFRQRVTLML 486
>sp|Q01629|IFM2_HUMAN Interferon-induced transmembrane protein 2 (Interferon-inducible
protein 1-8D)
Length = 132
Score = 29.3 bits (64), Expect = 2.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 88 HLRSPSNAPDHMTNQIFNSLFI 23
H+RS ++ PDH+ +FN+LF+
Sbjct: 46 HIRSETSVPDHVVWSLFNTLFM 67
>sp|P70191|TRAF5_MOUSE TNF receptor-associated factor 5
Length = 558
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 36 LNIWFVIWSGAFDGDLKWPCQTDVTIYI 119
L+++FV+ G FD L+WP + VT+ +
Sbjct: 459 LSLYFVVMRGEFDSLLQWPFRQRVTLML 486
>sp|P35344|CXCR2_RABIT High affinity interleukin-8 receptor B (IL-8R B) (CXCR-2) (GRO/MGSA
receptor)
Length = 358
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 183 LVLLFCMIFLLMCIFSHHSMQKYK 112
LV+LFC +F L +F H QK++
Sbjct: 223 LVMLFCYVFTLRTLFQAHMGQKHR 246
>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
Length = 1070
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = -3
Query: 308 YINLFK------TFSFKFYNANQFAVYIDKILFRQIRMRNFDWIKQIIW 180
Y+N+F + +FKFY+ N F + KI+ + ++N IIW
Sbjct: 45 YLNIFIAEKKGISANFKFYHPNDFIWKLFKIILSKKELKNIFTHSMIIW 93
>sp|Q13114|TRAF3_HUMAN TNF receptor-associated factor 3 (CD40 receptor associated factor
1) (CRAF1) (CD40 binding protein) (CD40BP) (LMP1
associated protein) (LAP1) (CAP-1)
Length = 568
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 36 LNIWFVIWSGAFDGDLKWPCQTDVTIYI 119
L+++FVI G +D L WP + VT+ +
Sbjct: 471 LSLFFVIMRGEYDALLPWPFKQKVTLML 498
>sp|Q60803|TRAF3_MOUSE TNF receptor-associated factor 3 (CD40 receptor associated factor
1) (CRAF1) (TRAFAMN)
Length = 567
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 36 LNIWFVIWSGAFDGDLKWPCQTDVTIYI 119
L+++FVI G +D L WP + VT+ +
Sbjct: 470 LSLFFVIMRGEYDALLPWPFKQKVTLML 497
>sp|P02442|KRA3_CAPHI Keratin, high-sulfur matrix protein, IIIA3 (M2.6 protein)
Length = 132
Score = 27.7 bits (60), Expect = 8.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 125 CRNINCNISLTGPLKITIECTRPYDKP 45
CR ++C +++ P+ CTRP +P
Sbjct: 30 CRPVSCQTTVSRPVTFVSRCTRPICEP 56
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,081,482
Number of Sequences: 369166
Number of extensions: 490874
Number of successful extensions: 1130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)