Planaria EST Database


DrC_01628

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01628
         (731 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43657|TSN6_HUMAN  Tetraspanin-6 (Tspan-6) (Transmembrane...    41   0.003
sp|O60637|TSN3_HUMAN  Tetraspanin-3 (Tspan-3) (Transmembrane...    41   0.003
sp|Q62283|TSN7_MOUSE  Tetraspanin-7 (Tspan-7) (Transmembrane...    40   0.008
sp|Q9UKR8|TNS16_HUMAN  Tetraspanin-16 (Tspan-16) (Transmembr...    39   0.011
sp|O60635|TSN1_HUMAN  Tetraspanin-1 (Tspan-1) (Tetraspan NET...    39   0.019
sp|Q9QY33|TSN3_MOUSE  Tetraspanin-3 (Tspan-3) (Transmembrane...    38   0.024
sp|Q7YQL0|TSN7_PANTR  Tetraspanin-7 (Tspan-7) (Transmembrane...    37   0.041
sp|P41732|TSN7_HUMAN  Tetraspanin-7 (Tspan-7) (Transmembrane...    37   0.041
sp|Q7YQK9|TSN7_PONPY  Tetraspanin-7 (Tspan-7) (Transmembrane...    37   0.041
sp|Q5RC27|TSN1_PONPY  Tetraspanin-1 (Tspan-1)                      37   0.054
>sp|O43657|TSN6_HUMAN Tetraspanin-6 (Tspan-6) (Transmembrane 4 superfamily member 6)
           (T245 protein) (Tetraspanin TM4-D) (A15 homolog)
          Length = 245

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 1/145 (0%)
 Frame = +3

Query: 210 SLVQQNATSIGAIAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIVLIA 389
           SL+ + AT++  +  A G V++ L   G  A C  S                  L+  I 
Sbjct: 51  SLLNEKATNVPFVLIATGTVIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIV 110

Query: 390 FYGANSQTKIFVPLVNYLQTGIINKYKDIKST-EPESIFVNVIQITANCCGLYNYTDFNS 566
            +    + K      N  +       K   ST +  S  V+ IQ T +CCG+ +Y D+  
Sbjct: 111 GFVFRHEIK------NSFKNNYEKALKQYNSTGDYRSHAVDKIQNTLHCCGVTDYRDWTD 164

Query: 567 ATSFNRVAFGSDNKQYNLTFPLSCC 641
              ++              FP SCC
Sbjct: 165 TNYYSEKG-----------FPKSCC 178
>sp|O60637|TSN3_HUMAN Tetraspanin-3 (Tspan-3) (Transmembrane 4 superfamily member 8)
           (Tetraspanin TM4-A)
          Length = 253

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
 Frame = +3

Query: 246 IAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIVLIAFYGANSQTKIFV 425
           +  AVG +L  + ++G  A    S                  ++V++  Y   ++ +   
Sbjct: 56  VIIAVGALLFIIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVE--- 112

Query: 426 PLVNYLQTGIINKYKDIKSTEPE--SIFVNVIQITANCCGLYNYTDFNSATSFNRVAFGS 599
              N +   I   YK    T P+  S  ++ +Q   +CCG++NY+D+ +   F       
Sbjct: 113 ---NEVDRSIQKVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETK--- 166

Query: 600 DNKQYNLTFPLSCC 641
                N + PLSCC
Sbjct: 167 -----NQSVPLSCC 175
>sp|Q62283|TSN7_MOUSE Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily member 2)
           (Cell surface glycoprotein A15) (PE31) (TALLA homolog)
          Length = 249

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 32/150 (21%), Positives = 61/150 (40%)
 Frame = +3

Query: 207 ISLVQQNATSIGAIAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIVLI 386
           ISL+ +N+T+   +    G  +V   + G  A C  S                  L+  I
Sbjct: 48  ISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGI 107

Query: 387 AFYGANSQTKIFVPLVNYLQTGIINKYKDIKSTEPESIFVNVIQITANCCGLYNYTDFNS 566
           + +    + K       +L+T   +  ++    +  S  V+ +Q + +CCG+ NYT+++S
Sbjct: 108 SGFVFRHEIKD-----TFLRT-YTDAMQNYNGNDERSRAVDHVQRSLSCCGVQNYTNWSS 161

Query: 567 ATSFNRVAFGSDNKQYNLTFPLSCCLYDQD 656
           +  F            +   P SCC+ + D
Sbjct: 162 SPYF-----------LDHGIPPSCCMNETD 180
>sp|Q9UKR8|TNS16_HUMAN Tetraspanin-16 (Tspan-16) (Transmembrane 4 superfamily member 16)
           (Tetraspanin TM4-B)
          Length = 245

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 5/156 (3%)
 Frame = +3

Query: 189 ADASGVISLVQQNATSIGAIAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXX 368
           A  + V+ L       +G +   +GC+ V L   G       S                 
Sbjct: 41  ASLTNVLGLSSAYLLHVGNLCLVMGCITVLLGCAGWYGATKESRGTLLFCILSM------ 94

Query: 369 GLIVLIAFYGANSQTKIFVPLVN-----YLQTGIINKYKDIKSTEPESIFVNVIQITANC 533
            +IVLI    A +   +F P+V      +    +   Y+     +  S   N++     C
Sbjct: 95  -VIVLIMEVTAATVVLLFFPIVGDVALEHTFVTLRKNYRGYNEPDDYSTQWNLVMEKLKC 153

Query: 534 CGLYNYTDFNSATSFNRVAFGSDNKQYNLTFPLSCC 641
           CG+ NYTDF S +SF              T+P SCC
Sbjct: 154 CGVNNYTDF-SGSSFEMTT--------GHTYPRSCC 180
>sp|O60635|TSN1_HUMAN Tetraspanin-1 (Tspan-1) (Tetraspan NET-1) (Tetraspanin TM4-C)
          Length = 241

 Score = 38.5 bits (88), Expect = 0.019
 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 2/167 (1%)
 Frame = +3

Query: 201 GVISLVQQNATSIGAIAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIV 380
           G +S       ++G    A G V+ AL  LG       S                  L++
Sbjct: 44  GPLSSSAMQFVNVGYFLIAAGVVVFALGFLGCYGAKTESKCALVTFFFIL-------LLI 96

Query: 381 LIAFYGANSQTKIFVPLVNYLQTGIINKY--KDIKSTEPESIFVNVIQITANCCGLYNYT 554
            IA   A     ++  +  +  T ++     KD  S E  +   N       CCG  NYT
Sbjct: 97  FIAEVAAAVVALVYTTMAEHFLTLLVVPAIKKDYGSQEDFTQVWNTTMKGLKCCGFTNYT 156

Query: 555 DFNSATSFNRVAFGSDNKQYNLTFPLSCCLYDQDFTINTTNRDSCIK 695
           DF  +  F            N  FP  CC    D   NT N ++C K
Sbjct: 157 DFEDSPYFKE----------NSAFPPFCC---NDNVTNTAN-ETCTK 189
>sp|Q9QY33|TSN3_MOUSE Tetraspanin-3 (Tspan-3) (Transmembrane 4 superfamily member 8)
           (Tetraspanin TM4-A) (OSP-associated protein 1) (OAP-1)
          Length = 253

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 2/134 (1%)
 Frame = +3

Query: 246 IAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIVLIAFYGANSQTKIFV 425
           +  AVG +L  + ++G  A    S                  ++V++  Y   ++ +   
Sbjct: 56  VIIAVGALLFIIGLIGCCATIRESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVE--- 112

Query: 426 PLVNYLQTGIINKYKDIKSTEPE--SIFVNVIQITANCCGLYNYTDFNSATSFNRVAFGS 599
              N +   I   YK    T  +  S  ++ +Q   +CCG++NY+D+ +   F       
Sbjct: 113 ---NEVDRSIQKVYKTYNGTNSDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETK--- 166

Query: 600 DNKQYNLTFPLSCC 641
                N + PLSCC
Sbjct: 167 -----NQSVPLSCC 175
>sp|Q7YQL0|TSN7_PANTR Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily member 2)
          Length = 244

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 4/154 (2%)
 Frame = +3

Query: 207 ISLVQQNATSIGAIAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIVLI 386
           ISL+ +N+T+   +    G  +V   + G  A C  S                  L+  I
Sbjct: 43  ISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGI 102

Query: 387 AFYGANSQTKIFVPLVNYLQTGIINKYKDIKST----EPESIFVNVIQITANCCGLYNYT 554
           + +    + K       +L+T     Y D   T    +  S  V+ +Q + +CCG+ NYT
Sbjct: 103 SGFVFRHEIKD-----TFLRT-----YTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYT 152

Query: 555 DFNSATSFNRVAFGSDNKQYNLTFPLSCCLYDQD 656
           +++++  F                P SCC+ + D
Sbjct: 153 NWSTSPYF-----------LEHGIPPSCCMNETD 175
>sp|P41732|TSN7_HUMAN Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily member 2)
           (Cell surface glycoprotein A15) (T-cell acute
           lymphoblastic leukemia associated antigen 1) (TALLA-1)
           (Membrane component, X chromosome, surface marker 1)
           (CD231 antigen)
          Length = 249

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 4/154 (2%)
 Frame = +3

Query: 207 ISLVQQNATSIGAIAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIVLI 386
           ISL+ +N+T+   +    G  +V   + G  A C  S                  L+  I
Sbjct: 48  ISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGI 107

Query: 387 AFYGANSQTKIFVPLVNYLQTGIINKYKDIKST----EPESIFVNVIQITANCCGLYNYT 554
           + +    + K       +L+T     Y D   T    +  S  V+ +Q + +CCG+ NYT
Sbjct: 108 SGFVFRHEIKD-----TFLRT-----YTDAMQTYNGNDERSRAVDHVQRSLSCCGVQNYT 157

Query: 555 DFNSATSFNRVAFGSDNKQYNLTFPLSCCLYDQD 656
           +++++  F                P SCC+ + D
Sbjct: 158 NWSTSPYF-----------LEHGIPPSCCMNETD 180
>sp|Q7YQK9|TSN7_PONPY Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily member 2)
          Length = 244

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 4/154 (2%)
 Frame = +3

Query: 207 ISLVQQNATSIGAIAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIVLI 386
           ISL+ +N+T+   +    G  +V   + G  A C  S                  L+  I
Sbjct: 43  ISLIAENSTNAPYVLIGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGI 102

Query: 387 AFYGANSQTKIFVPLVNYLQTGIINKYKDIKST----EPESIFVNVIQITANCCGLYNYT 554
           + +    + K       +L+T     Y D   T    +  S  V+ +Q + +CCG+ NYT
Sbjct: 103 SGFVFRHEIKD-----TFLRT-----YTDAMQTYDGKDDRSQAVDHVQRSLSCCGVQNYT 152

Query: 555 DFNSATSFNRVAFGSDNKQYNLTFPLSCCLYDQD 656
           +++++  F                P SCC+ + D
Sbjct: 153 NWSTSPYF-----------LEHGIPPSCCMNETD 175
>sp|Q5RC27|TSN1_PONPY Tetraspanin-1 (Tspan-1)
          Length = 241

 Score = 37.0 bits (84), Expect = 0.054
 Identities = 42/167 (25%), Positives = 57/167 (34%), Gaps = 2/167 (1%)
 Frame = +3

Query: 201 GVISLVQQNATSIGAIAFAVGCVLVALAILGIIAVCCCSXXXXXXXXXXXXXXXXXGLIV 380
           G +S       ++G    A G V+ AL  LG       S                  L++
Sbjct: 44  GPLSSSAMQFVNVGYFLIAAGVVVFALGFLGCYGAKTESKCALMTFFFIL-------LLI 96

Query: 381 LIAFYGANSQTKIFVPLVNYLQTGIINKY--KDIKSTEPESIFVNVIQITANCCGLYNYT 554
            IA   A     ++  +  +  T ++     KD  S E  +   N       CCG  NYT
Sbjct: 97  FIAEVAAAVVALVYTTMAEHFLTLLVVPAIKKDYGSQEDFTQVWNTTMKGLKCCGFTNYT 156

Query: 555 DFNSATSFNRVAFGSDNKQYNLTFPLSCCLYDQDFTINTTNRDSCIK 695
           DF            S   + N  FP  CC    D   NT N D+C K
Sbjct: 157 DFED----------SPYLKENHAFPPFCC---NDNITNTAN-DTCTK 189
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,920,399
Number of Sequences: 369166
Number of extensions: 1665679
Number of successful extensions: 5250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5229
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)