Planaria EST Database


DrC_01624

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01624
         (175 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60183|VATE_METMA  V-type ATP synthase subunit E (V-type ...    29   3.8  
sp|Q8TIJ4|VATE_METAC  V-type ATP synthase subunit E (V-type ...    28   5.0  
sp|O60879|DIAP2_HUMAN  Diaphanous protein homolog 2 (Diaphan...    28   6.5  
sp|Q980I9|AROB_SULSO  3-dehydroquinate synthase                    28   6.5  
>sp|Q60183|VATE_METMA V-type ATP synthase subunit E (V-type ATPase subunit E)
          Length = 183

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 19  ERENLILNKRREMEDKLYRSKLEKLAEMLANEK*KL 126
           E + + LNKR+E+ D +Y   +E +  M A++K +L
Sbjct: 69  EVKRITLNKRKELLDTVYNQTVENIKSMPASKKEEL 104
>sp|Q8TIJ4|VATE_METAC V-type ATP synthase subunit E (V-type ATPase subunit E)
          Length = 183

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 19  ERENLILNKRREMEDKLYRSKLEKLAEMLANEK*KL 126
           E + + LNKR+E+ D +Y   +E +  M A++  KL
Sbjct: 69  EVKRITLNKRKELLDNVYSQTVESIKSMPASKNEKL 104
>sp|O60879|DIAP2_HUMAN Diaphanous protein homolog 2 (Diaphanous-related formin-2) (DRF2)
          Length = 1101

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 22   RENLILNKRREMEDKLYRSKLEK 90
            REN   NKRREME+K  R+KL K
Sbjct: 1007 REN---NKRREMEEKTRRAKLAK 1026
>sp|Q980I9|AROB_SULSO 3-dehydroquinate synthase
          Length = 354

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   LYNEMKERENLILNKRRE-MEDKLYRSKLEKLAEMLANEK*KLSIQI 138
           LY+ +   +  ILNK ++ +ED ++RS L+KL+ +  +E+    I+I
Sbjct: 186 LYDYLSLNKEKILNKDKQALEDIIFRSTLDKLSIVKEDERETKGIRI 232
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,980,884
Number of Sequences: 369166
Number of extensions: 165810
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)