Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N16
(175 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60183|VATE_METMA V-type ATP synthase subunit E (V-type ... 29 3.8
sp|Q8TIJ4|VATE_METAC V-type ATP synthase subunit E (V-type ... 28 5.0
sp|O60879|DIAP2_HUMAN Diaphanous protein homolog 2 (Diaphan... 28 6.5
sp|Q980I9|AROB_SULSO 3-dehydroquinate synthase 28 6.5
>sp|Q60183|VATE_METMA V-type ATP synthase subunit E (V-type ATPase subunit E)
Length = 183
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 19 ERENLILNKRREMEDKLYRSKLEKLAEMLANEK*KL 126
E + + LNKR+E+ D +Y +E + M A++K +L
Sbjct: 69 EVKRITLNKRKELLDTVYNQTVENIKSMPASKKEEL 104
>sp|Q8TIJ4|VATE_METAC V-type ATP synthase subunit E (V-type ATPase subunit E)
Length = 183
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 19 ERENLILNKRREMEDKLYRSKLEKLAEMLANEK*KL 126
E + + LNKR+E+ D +Y +E + M A++ KL
Sbjct: 69 EVKRITLNKRKELLDNVYSQTVESIKSMPASKNEKL 104
>sp|O60879|DIAP2_HUMAN Diaphanous protein homolog 2 (Diaphanous-related formin-2) (DRF2)
Length = 1101
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +1
Query: 22 RENLILNKRREMEDKLYRSKLEK 90
REN NKRREME+K R+KL K
Sbjct: 1007 REN---NKRREMEEKTRRAKLAK 1026
>sp|Q980I9|AROB_SULSO 3-dehydroquinate synthase
Length = 354
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 LYNEMKERENLILNKRRE-MEDKLYRSKLEKLAEMLANEK*KLSIQI 138
LY+ + + ILNK ++ +ED ++RS L+KL+ + +E+ I+I
Sbjct: 186 LYDYLSLNKEKILNKDKQALEDIIFRSTLDKLSIVKEDERETKGIRI 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,980,884
Number of Sequences: 369166
Number of extensions: 165810
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)