Planaria EST Database


DrC_01623

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01623
         (770 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7YQM4|ATRX_PANTR  Transcriptional regulator ATRX (X-link...    49   2e-05
sp|Q61687|ATRX_MOUSE  Transcriptional regulator ATRX (X-link...    49   2e-05
sp|P46100|ATRX_HUMAN  Transcriptional regulator ATRX (X-link...    49   2e-05
sp|Q7YQM3|ATRX_PONPY  Transcriptional regulator ATRX (X-link...    49   2e-05
sp|P82798|ATRX_MACEU  Transcriptional regulator ATRX (X-link...    48   3e-05
sp||P83946_2  [Segment 2 of 2] Transcriptional regulator ATRY      47   4e-05
sp|Q09828|SYLM_SCHPO  Putative leucyl-tRNA synthetase, mitoc...    39   0.016
sp|Q9UJW3|DNM3L_HUMAN  DNA (cytosine-5)-methyltransferase 3-...    37   0.045
sp|O95081|HRBL_HUMAN  HIV-1 Rev-binding protein-like protein...    36   0.13 
sp|Q80WC7|HRBL_MOUSE  HIV-1 Rev-binding protein-like protein...    36   0.13 
>sp|Q7YQM4|ATRX_PANTR Transcriptional regulator ATRX (X-linked helicase II) (X-linked
           nuclear protein) (XNP)
          Length = 2492

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
 Frame = +3

Query: 75  CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI------ 230
           C WC     L+ C  C+   C  CI RNLG   + ++ ++N  W C++C   P+      
Sbjct: 220 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 279

Query: 231 -----EHLQKEYYKFSKLLRNEVEP----------LAPEGAASSIDITSPYILVDESEDS 365
                E+L++   +  K ++ + E            +P+  +S+ +     +  D+S   
Sbjct: 280 CNSVFENLEQLLQQNKKKIKVDSEKSNKVYEHTSRFSPKKTSSNCNGEEKKL--DDSCSG 337

Query: 366 FRKFSRKSVIGSQD--------LDSILNMYEKQIKASLELDDANIPSILTEINSIKTEHL 521
              +S  ++I  ++        +++  NM    +K   +  D +  S  T++  +K    
Sbjct: 338 SVTYSYSALIVPKEMIKKAKKLIETTANMNSSYVKFLKQATDNSEISSATKLRQLKA--F 395

Query: 522 STAIHSLKKCLSAFASDLTNLESRVSQAV 608
            + +  +KK   A   DL N E R   AV
Sbjct: 396 KSVLADIKKAHLALEEDL-NSEFRAMDAV 423
>sp|Q61687|ATRX_MOUSE Transcriptional regulator ATRX (X-linked nuclear protein)
           (Heterochromatin protein 2) (HP1 alpha-interacting
           protein) (HP1-BP38 protein)
          Length = 2476

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 75  CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI 230
           C WC     L+ C  C+   C  CI RNLG   + ++ ++N  W C++C   P+
Sbjct: 219 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQPEPL 272
>sp|P46100|ATRX_HUMAN Transcriptional regulator ATRX (X-linked helicase II) (X-linked
           nuclear protein) (XNP) (Znf-HX)
          Length = 2492

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
 Frame = +3

Query: 75  CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI------ 230
           C WC     L+ C  C+   C  CI RNLG   + ++ ++N  W C++C   P+      
Sbjct: 220 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 279

Query: 231 -----EHLQKEYYKFSKLLRNEVEP----------LAPEGAASSIDITSPYILVDESEDS 365
                E+L++   +  K ++ + E            +P+  +S+ +     +  D+S   
Sbjct: 280 CNSVFENLEQLLQQNKKKIKVDSEKSNKVYEHTSRFSPKKTSSNCNGEEKKL--DDSCSG 337

Query: 366 FRKFSRKSVIGSQD--------LDSILNMYEKQIKASLELDDANIPSILTEINSIKTEHL 521
              +S  ++I  ++        +++  NM    +K   +  D +  S  T++  +K    
Sbjct: 338 SVTYSYSALIVPKEMIKKAKKLIETTANMNSSYVKFLKQATDNSEISSATKLRQLKA--F 395

Query: 522 STAIHSLKKCLSAFASDLTNLESRVSQAV 608
            + +  +KK   A   DL N E R   AV
Sbjct: 396 KSVLADIKKAHLALEEDL-NSEFRAMDAV 423
>sp|Q7YQM3|ATRX_PONPY Transcriptional regulator ATRX (X-linked helicase II) (X-linked
           nuclear protein) (XNP)
          Length = 2492

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 75  CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI 230
           C WC     L+ C  C+   C  CI RNLG   + ++ ++N  W C++C   P+
Sbjct: 220 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL 273
>sp|P82798|ATRX_MACEU Transcriptional regulator ATRX (X-linked nuclear protein)
          Length = 497

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 75  CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI 230
           C WC     L+ C  C+   C  CI RNLG   + ++ ++N  W C++C   P+
Sbjct: 82  CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSAIMDENSQWYCYICRPEPL 135
>sp||P83946_2 [Segment 2 of 2] Transcriptional regulator ATRY
          Length = 66

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 81  WCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSV-NEKN-WLCFVCDGNPI 230
           WC     L+ C  C+   C  CI RNLG   I  + NEKN W C++C   P+
Sbjct: 2   WCAEGGNLICCDSCHNAFCKKCIWRNLGRKEISKIMNEKNEWHCYICCPEPL 53
>sp|Q09828|SYLM_SCHPO Putative leucyl-tRNA synthetase, mitochondrial precursor
            (Leucine--tRNA ligase) (LeuRS)
          Length = 874

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
 Frame = +3

Query: 222  NPIEHLQKEYYKFSKLLRNEVEPLAPEGAASSIDITSPYILVDESEDSFRKFSRKSVIGS 401
            NP E +Q  Y K SK   N V+P+       S DI   YI+     +    ++  +++G+
Sbjct: 617  NPKEKVQLSYQKMSKSKHNGVDPIRTIQKYGS-DIIRAYIIFSAPVEGVLLWNENAIMGT 675

Query: 402  QD-LDSILNMYEKQIKASLELDDANIPSILTEINSIKTEHLSTAIHS-LKKC-------- 551
            +  L  I N   + ++   ++ DA   + LT ++   +  L +  +  + +C        
Sbjct: 676  KRWLTKIWNCVHQLLEREKKMSDAMRQTKLTIVDDHNSRKLESQYNEFISQCSAHYENVF 735

Query: 552  -LSAFASDLTNLESRVSQAVTTNNQLILSKLTSLLRILIQ 668
             L+   SD   L + ++ A+  NN++ +  + + L +L++
Sbjct: 736  SLNLVISDAMKLTNNIADAL-KNNKVNIGTIKASLEVLVK 774
>sp|Q9UJW3|DNM3L_HUMAN DNA (cytosine-5)-methyltransferase 3-like
          Length = 387

 Score = 37.4 bits (85), Expect = 0.045
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 69  SYCFWCTRDKELLACGK--CNYKCCYDCITRNLGGSYIDSVNE-KNWLCFVC 215
           SYC  C   + LL CG   C    C++C+   +G      V+   NW+C++C
Sbjct: 94  SYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145
>sp|O95081|HRBL_HUMAN HIV-1 Rev-binding protein-like protein (Rev/Rex activation domain
           binding protein-related) (RAB-R)
          Length = 481

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 57  QSEISYCFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKNWLCFVCDG 221
           ++E +   WC R +EL  C +   + C++C  R  G +Y+D +   +++C  C G
Sbjct: 21  EAEAASEVWCRRVRELGGCSQAGNRHCFECAQR--GVTYVD-ITVGSFVCTTCSG 72
>sp|Q80WC7|HRBL_MOUSE HIV-1 Rev-binding protein-like protein (Rev/Rex activation domain
           binding protein-related) (RAB-R)
          Length = 479

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +3

Query: 57  QSEISYCFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKNWLCFVCDG 221
           ++E +   WC R +EL  C +   + C++C  R  G +Y+D +   +++C  C G
Sbjct: 21  EAEAASEVWCRRVRELGGCSQAGNRHCFECAQR--GVTYVD-ITVGSFVCTTCSG 72
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,025,311
Number of Sequences: 369166
Number of extensions: 1488999
Number of successful extensions: 4004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4000
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)