Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N11
(770 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7YQM4|ATRX_PANTR Transcriptional regulator ATRX (X-link... 49 2e-05
sp|Q61687|ATRX_MOUSE Transcriptional regulator ATRX (X-link... 49 2e-05
sp|P46100|ATRX_HUMAN Transcriptional regulator ATRX (X-link... 49 2e-05
sp|Q7YQM3|ATRX_PONPY Transcriptional regulator ATRX (X-link... 49 2e-05
sp|P82798|ATRX_MACEU Transcriptional regulator ATRX (X-link... 48 3e-05
sp||P83946_2 [Segment 2 of 2] Transcriptional regulator ATRY 47 4e-05
sp|Q09828|SYLM_SCHPO Putative leucyl-tRNA synthetase, mitoc... 39 0.016
sp|Q9UJW3|DNM3L_HUMAN DNA (cytosine-5)-methyltransferase 3-... 37 0.045
sp|O95081|HRBL_HUMAN HIV-1 Rev-binding protein-like protein... 36 0.13
sp|Q80WC7|HRBL_MOUSE HIV-1 Rev-binding protein-like protein... 36 0.13
>sp|Q7YQM4|ATRX_PANTR Transcriptional regulator ATRX (X-linked helicase II) (X-linked
nuclear protein) (XNP)
Length = 2492
Score = 48.9 bits (115), Expect = 2e-05
Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Frame = +3
Query: 75 CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI------ 230
C WC L+ C C+ C CI RNLG + ++ ++N W C++C P+
Sbjct: 220 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 279
Query: 231 -----EHLQKEYYKFSKLLRNEVEP----------LAPEGAASSIDITSPYILVDESEDS 365
E+L++ + K ++ + E +P+ +S+ + + D+S
Sbjct: 280 CNSVFENLEQLLQQNKKKIKVDSEKSNKVYEHTSRFSPKKTSSNCNGEEKKL--DDSCSG 337
Query: 366 FRKFSRKSVIGSQD--------LDSILNMYEKQIKASLELDDANIPSILTEINSIKTEHL 521
+S ++I ++ +++ NM +K + D + S T++ +K
Sbjct: 338 SVTYSYSALIVPKEMIKKAKKLIETTANMNSSYVKFLKQATDNSEISSATKLRQLKA--F 395
Query: 522 STAIHSLKKCLSAFASDLTNLESRVSQAV 608
+ + +KK A DL N E R AV
Sbjct: 396 KSVLADIKKAHLALEEDL-NSEFRAMDAV 423
>sp|Q61687|ATRX_MOUSE Transcriptional regulator ATRX (X-linked nuclear protein)
(Heterochromatin protein 2) (HP1 alpha-interacting
protein) (HP1-BP38 protein)
Length = 2476
Score = 48.9 bits (115), Expect = 2e-05
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 75 CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI 230
C WC L+ C C+ C CI RNLG + ++ ++N W C++C P+
Sbjct: 219 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICQPEPL 272
>sp|P46100|ATRX_HUMAN Transcriptional regulator ATRX (X-linked helicase II) (X-linked
nuclear protein) (XNP) (Znf-HX)
Length = 2492
Score = 48.9 bits (115), Expect = 2e-05
Identities = 45/209 (21%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Frame = +3
Query: 75 CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI------ 230
C WC L+ C C+ C CI RNLG + ++ ++N W C++C P+
Sbjct: 220 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTA 279
Query: 231 -----EHLQKEYYKFSKLLRNEVEP----------LAPEGAASSIDITSPYILVDESEDS 365
E+L++ + K ++ + E +P+ +S+ + + D+S
Sbjct: 280 CNSVFENLEQLLQQNKKKIKVDSEKSNKVYEHTSRFSPKKTSSNCNGEEKKL--DDSCSG 337
Query: 366 FRKFSRKSVIGSQD--------LDSILNMYEKQIKASLELDDANIPSILTEINSIKTEHL 521
+S ++I ++ +++ NM +K + D + S T++ +K
Sbjct: 338 SVTYSYSALIVPKEMIKKAKKLIETTANMNSSYVKFLKQATDNSEISSATKLRQLKA--F 395
Query: 522 STAIHSLKKCLSAFASDLTNLESRVSQAV 608
+ + +KK A DL N E R AV
Sbjct: 396 KSVLADIKKAHLALEEDL-NSEFRAMDAV 423
>sp|Q7YQM3|ATRX_PONPY Transcriptional regulator ATRX (X-linked helicase II) (X-linked
nuclear protein) (XNP)
Length = 2492
Score = 48.5 bits (114), Expect = 2e-05
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 75 CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI 230
C WC L+ C C+ C CI RNLG + ++ ++N W C++C P+
Sbjct: 220 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL 273
>sp|P82798|ATRX_MACEU Transcriptional regulator ATRX (X-linked nuclear protein)
Length = 497
Score = 48.1 bits (113), Expect = 3e-05
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 75 CFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKN--WLCFVCDGNPI 230
C WC L+ C C+ C CI RNLG + ++ ++N W C++C P+
Sbjct: 82 CRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSAIMDENSQWYCYICRPEPL 135
>sp||P83946_2 [Segment 2 of 2] Transcriptional regulator ATRY
Length = 66
Score = 47.4 bits (111), Expect = 4e-05
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 81 WCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSV-NEKN-WLCFVCDGNPI 230
WC L+ C C+ C CI RNLG I + NEKN W C++C P+
Sbjct: 2 WCAEGGNLICCDSCHNAFCKKCIWRNLGRKEISKIMNEKNEWHCYICCPEPL 53
>sp|Q09828|SYLM_SCHPO Putative leucyl-tRNA synthetase, mitochondrial precursor
(Leucine--tRNA ligase) (LeuRS)
Length = 874
Score = 38.9 bits (89), Expect = 0.016
Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 11/160 (6%)
Frame = +3
Query: 222 NPIEHLQKEYYKFSKLLRNEVEPLAPEGAASSIDITSPYILVDESEDSFRKFSRKSVIGS 401
NP E +Q Y K SK N V+P+ S DI YI+ + ++ +++G+
Sbjct: 617 NPKEKVQLSYQKMSKSKHNGVDPIRTIQKYGS-DIIRAYIIFSAPVEGVLLWNENAIMGT 675
Query: 402 QD-LDSILNMYEKQIKASLELDDANIPSILTEINSIKTEHLSTAIHS-LKKC-------- 551
+ L I N + ++ ++ DA + LT ++ + L + + + +C
Sbjct: 676 KRWLTKIWNCVHQLLEREKKMSDAMRQTKLTIVDDHNSRKLESQYNEFISQCSAHYENVF 735
Query: 552 -LSAFASDLTNLESRVSQAVTTNNQLILSKLTSLLRILIQ 668
L+ SD L + ++ A+ NN++ + + + L +L++
Sbjct: 736 SLNLVISDAMKLTNNIADAL-KNNKVNIGTIKASLEVLVK 774
>sp|Q9UJW3|DNM3L_HUMAN DNA (cytosine-5)-methyltransferase 3-like
Length = 387
Score = 37.4 bits (85), Expect = 0.045
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 69 SYCFWCTRDKELLACGK--CNYKCCYDCITRNLGGSYIDSVNE-KNWLCFVC 215
SYC C + LL CG C C++C+ +G V+ NW+C++C
Sbjct: 94 SYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLC 145
>sp|O95081|HRBL_HUMAN HIV-1 Rev-binding protein-like protein (Rev/Rex activation domain
binding protein-related) (RAB-R)
Length = 481
Score = 35.8 bits (81), Expect = 0.13
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 57 QSEISYCFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKNWLCFVCDG 221
++E + WC R +EL C + + C++C R G +Y+D + +++C C G
Sbjct: 21 EAEAASEVWCRRVRELGGCSQAGNRHCFECAQR--GVTYVD-ITVGSFVCTTCSG 72
>sp|Q80WC7|HRBL_MOUSE HIV-1 Rev-binding protein-like protein (Rev/Rex activation domain
binding protein-related) (RAB-R)
Length = 479
Score = 35.8 bits (81), Expect = 0.13
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 57 QSEISYCFWCTRDKELLACGKCNYKCCYDCITRNLGGSYIDSVNEKNWLCFVCDG 221
++E + WC R +EL C + + C++C R G +Y+D + +++C C G
Sbjct: 21 EAEAASEVWCRRVRELGGCSQAGNRHCFECAQR--GVTYVD-ITVGSFVCTTCSG 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,025,311
Number of Sequences: 369166
Number of extensions: 1488999
Number of successful extensions: 4004
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4000
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)