Planaria EST Database


DrC_01622

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01622
         (856 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53119|HUL5_YEAST  Probable ubiquitin--protein ligase HUL5      34   0.59 
sp|P24040|NIRS_PSEST  Nitrite reductase precursor (Cytochrom...    31   5.0  
sp|Q09769|LONM_SCHPO  Putative Lon protease homolog, mitocho...    30   6.5  
sp|Q58917|CBIE_METJA  Probable cobalt-precorrin-6Y C(5,15)-m...    30   6.5  
sp|Q04575|RRPO_SHVX  RNA replication protein (194 kDa protei...    30   8.5  
sp|Q9CZC8|SCRN1_MOUSE  Secernin-1                                  30   8.5  
>sp|P53119|HUL5_YEAST Probable ubiquitin--protein ligase HUL5
          Length = 910

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
 Frame = +3

Query: 300  NNVNLDNFKDPTEYRKYCEDQ----GWWNTSDEYELLKEFQNINATSK--------FKSL 443
            +N++LD+ K  TEY  Y E+      +W   +E++  ++   +   +         FK+L
Sbjct: 797  DNIDLDDLKSNTEYGGYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKAL 856

Query: 444  NGKYGVTTEFTDAFLLP 494
            + K+G+    T+ + LP
Sbjct: 857  DPKFGIRNAGTEKYRLP 873
>sp|P24040|NIRS_PSEST Nitrite reductase precursor (Cytochrome cd1) (Cytochrome oxidase)
           (Hydroxylamine reductase)
          Length = 560

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 246 KVVWVPHNMKSTKEFLIFNNVNLDNFKDPT-EYRKYCEDQGWWNTSDEYELLKEFQNINA 422
           K  WV  N+K T + ++ +  +L N K  T E  K+  D GW + S  Y ++      NA
Sbjct: 301 KPEWVV-NVKETGQIILVDYTDLKNLKTTTIESAKFLHDGGW-DYSKRYFMVA----ANA 354

Query: 423 TSKFKSLNGKYGVTTEFTDAFLLP 494
           ++K  +++ K G      D   +P
Sbjct: 355 SNKVAAVDTKTGKLAALIDTAKIP 378
>sp|Q09769|LONM_SCHPO Putative Lon protease homolog, mitochondrial precursor
          Length = 1067

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
 Frame = +3

Query: 309 NLDNFKDPTEYRKYCEDQGWWNTSDEYELLKEFQN--INATSKF-KSLNGKYGVTTEFTD 479
           NL +  + TE  KY   Q   + +DE+EL  E     +    +F K++  KY V   +  
Sbjct: 103 NLKSSSNKTE-EKYSATQASKSKNDEFELGGEENEDEMPLNGEFNKNVPAKYSVPDVYPQ 161

Query: 480 AFLLPDGR------MVRAIVVEHPKKSTTLKAFNMYKGGWAGDFLL 599
              LP  R        +AIV ++P  S  +K     +  + G FLL
Sbjct: 162 LLALPIARRPLFPGFYKAIVTKNPSVSEAIKELIKKRQPYIGAFLL 207
>sp|Q58917|CBIE_METJA Probable cobalt-precorrin-6Y C(5,15)-methyltransferase
           [decarboxylating] (Cobalt-precorrin-6 methyltransferase)
           (Cobalt-precorrin-6Y methylase)
          Length = 211

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 237 NWRKVVWVPHNMKSTKEFLIFNNVNLD 317
           N  KV+++P+N+K   +FLI N +N D
Sbjct: 142 NHEKVIFLPNNLKEDAKFLINNGINPD 168
>sp|Q04575|RRPO_SHVX RNA replication protein (194 kDa protein) (ORF 1 protein) [Includes:
            RNA-directed RNA polymerase ; Helicase ]
          Length = 1718

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = +3

Query: 480  AFLLPDGRMVRAIVVEHPKKSTTLKAFNMYKGGWAGDFLLHS--IFDADTNLCYGEL--- 644
            A ++PD  MV           T L    M   G  G  L H   I D DT LC  E+   
Sbjct: 1071 ANIVPDLAMVLVPAFRSQSLLTDLGRHAMTYAGCQGLTLNHLTIILDKDTPLCSDEVLYT 1130

Query: 645  ---HLMEVKTFVNSHEDN 689
                  E  TFVN+H DN
Sbjct: 1131 AFSRASESITFVNTHSDN 1148
>sp|Q9CZC8|SCRN1_MOUSE Secernin-1
          Length = 414

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 336 EYRKYCEDQGWWNTSDEYELLKEF 407
           E R Y + QGWW   DE+   + F
Sbjct: 203 ELRTYAQSQGWWTGDDEFNFAQVF 226
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,531,471
Number of Sequences: 369166
Number of extensions: 1386305
Number of successful extensions: 3637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3637
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)