Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_N07
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53119|HUL5_YEAST Probable ubiquitin--protein ligase HUL5 34 0.59
sp|P24040|NIRS_PSEST Nitrite reductase precursor (Cytochrom... 31 5.0
sp|Q09769|LONM_SCHPO Putative Lon protease homolog, mitocho... 30 6.5
sp|Q58917|CBIE_METJA Probable cobalt-precorrin-6Y C(5,15)-m... 30 6.5
sp|Q04575|RRPO_SHVX RNA replication protein (194 kDa protei... 30 8.5
sp|Q9CZC8|SCRN1_MOUSE Secernin-1 30 8.5
>sp|P53119|HUL5_YEAST Probable ubiquitin--protein ligase HUL5
Length = 910
Score = 33.9 bits (76), Expect = 0.59
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Frame = +3
Query: 300 NNVNLDNFKDPTEYRKYCEDQ----GWWNTSDEYELLKEFQNINATSK--------FKSL 443
+N++LD+ K TEY Y E+ +W +E++ ++ + + FK+L
Sbjct: 797 DNIDLDDLKSNTEYGGYKEEDQTIVDFWEVLNEFKFEEKLNFLKFVTSVPQAPLQGFKAL 856
Query: 444 NGKYGVTTEFTDAFLLP 494
+ K+G+ T+ + LP
Sbjct: 857 DPKFGIRNAGTEKYRLP 873
>sp|P24040|NIRS_PSEST Nitrite reductase precursor (Cytochrome cd1) (Cytochrome oxidase)
(Hydroxylamine reductase)
Length = 560
Score = 30.8 bits (68), Expect = 5.0
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +3
Query: 246 KVVWVPHNMKSTKEFLIFNNVNLDNFKDPT-EYRKYCEDQGWWNTSDEYELLKEFQNINA 422
K WV N+K T + ++ + +L N K T E K+ D GW + S Y ++ NA
Sbjct: 301 KPEWVV-NVKETGQIILVDYTDLKNLKTTTIESAKFLHDGGW-DYSKRYFMVA----ANA 354
Query: 423 TSKFKSLNGKYGVTTEFTDAFLLP 494
++K +++ K G D +P
Sbjct: 355 SNKVAAVDTKTGKLAALIDTAKIP 378
>sp|Q09769|LONM_SCHPO Putative Lon protease homolog, mitochondrial precursor
Length = 1067
Score = 30.4 bits (67), Expect = 6.5
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Frame = +3
Query: 309 NLDNFKDPTEYRKYCEDQGWWNTSDEYELLKEFQN--INATSKF-KSLNGKYGVTTEFTD 479
NL + + TE KY Q + +DE+EL E + +F K++ KY V +
Sbjct: 103 NLKSSSNKTE-EKYSATQASKSKNDEFELGGEENEDEMPLNGEFNKNVPAKYSVPDVYPQ 161
Query: 480 AFLLPDGR------MVRAIVVEHPKKSTTLKAFNMYKGGWAGDFLL 599
LP R +AIV ++P S +K + + G FLL
Sbjct: 162 LLALPIARRPLFPGFYKAIVTKNPSVSEAIKELIKKRQPYIGAFLL 207
>sp|Q58917|CBIE_METJA Probable cobalt-precorrin-6Y C(5,15)-methyltransferase
[decarboxylating] (Cobalt-precorrin-6 methyltransferase)
(Cobalt-precorrin-6Y methylase)
Length = 211
Score = 30.4 bits (67), Expect = 6.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 237 NWRKVVWVPHNMKSTKEFLIFNNVNLD 317
N KV+++P+N+K +FLI N +N D
Sbjct: 142 NHEKVIFLPNNLKEDAKFLINNGINPD 168
>sp|Q04575|RRPO_SHVX RNA replication protein (194 kDa protein) (ORF 1 protein) [Includes:
RNA-directed RNA polymerase ; Helicase ]
Length = 1718
Score = 30.0 bits (66), Expect = 8.5
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Frame = +3
Query: 480 AFLLPDGRMVRAIVVEHPKKSTTLKAFNMYKGGWAGDFLLHS--IFDADTNLCYGEL--- 644
A ++PD MV T L M G G L H I D DT LC E+
Sbjct: 1071 ANIVPDLAMVLVPAFRSQSLLTDLGRHAMTYAGCQGLTLNHLTIILDKDTPLCSDEVLYT 1130
Query: 645 ---HLMEVKTFVNSHEDN 689
E TFVN+H DN
Sbjct: 1131 AFSRASESITFVNTHSDN 1148
>sp|Q9CZC8|SCRN1_MOUSE Secernin-1
Length = 414
Score = 30.0 bits (66), Expect = 8.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 336 EYRKYCEDQGWWNTSDEYELLKEF 407
E R Y + QGWW DE+ + F
Sbjct: 203 ELRTYAQSQGWWTGDDEFNFAQVF 226
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,531,471
Number of Sequences: 369166
Number of extensions: 1386305
Number of successful extensions: 3637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3637
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)