Planaria EST Database


DrC_01617

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01617
         (668 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49379|CBF1_KLULA  Centromere-binding protein 1 (CBP-1) (...    34   0.30 
sp|Q8RXF1|SF3A1_ARATH  Probable splicing factor 3 subunit 1        33   0.88 
sp|P29974|CNGA1_MOUSE  cGMP-gated cation channel alpha 1 (CN...    32   1.2  
sp|P35845|OSH1_YEAST  Oxysterol-binding protein homolog 1          32   1.2  
sp|O94312|YH57_SCHPO  PWWP domain protein C215.07c                 32   1.5  
sp|P29973|CNGA1_HUMAN  cGMP-gated cation channel alpha 1 (CN...    32   2.0  
sp|Q62927|CNGA1_RAT  cGMP-gated cation channel alpha 1 (CNG ...    31   3.4  
sp|P38177|YBI6_YEAST  Hypothetical 52.0 kDa protein in RPL23...    30   5.7  
sp|O33845|DPOL_THEAG  DNA polymerase (Pol Tfu) [Contains: Ta...    30   5.7  
sp|P24587|AK15_RAT  A-kinase anchor protein 150 (AKAP 150) (...    30   7.5  
>sp|P49379|CBF1_KLULA Centromere-binding protein 1 (CBP-1) (Centromere-binding factor 1)
           (Centromere promoter factor 1)
          Length = 359

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 26/85 (30%), Positives = 38/85 (44%)
 Frame = +3

Query: 3   DHVDNKANYEDPSALCGNDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSE 182
           DHVD     +DP A+   D+ + + D+A   + R K  ++    S DS     +  S S 
Sbjct: 136 DHVDIDDVDKDPDAVIDEDDDEEDEDQA--QRRRGKKNIEGTGESNDSERATKIGESGSS 193

Query: 183 ISTETTDKPAGENEDISIEDGHPTD 257
             T   D  +G+ ED S  DG   D
Sbjct: 194 NETAGAD-GSGDREDGSQPDGTEHD 217
>sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1
          Length = 785

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
 Frame = +3

Query: 57  DNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEISTETTD--------KPA 212
           D  D  ++E P P T  +   +SKA++++  EI++ P    E+  +  +        + A
Sbjct: 313 DFADEEDEELPPPMTLDEVIRRSKASAMEEDEIVE-PGKEVEMEMDEEEVKLVAEGMRAA 371

Query: 213 GENEDISIEDGHPTDFPITIISEPSNPK 296
              E++ IE+ H  + P+ I+     P+
Sbjct: 372 NLEENVKIENVHDEEAPMRIVKNWKRPE 399
>sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
           (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
           nucleotide gated channel, photoreceptor)
           (Cyclic-nucleotide-gated cation channel 1) (Rod
           photoreceptor cGMP-gated channel alpha subunit)
          Length = 684

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
 Frame = +3

Query: 54  NDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEISTETTDKPAGENEDIS 233
           N N  SN D+ PK K + K E KSKA   D  E    P    +   E   K   + E+ +
Sbjct: 82  NVNNSSNKDQEPKEKKKKKKEKKSKAD--DKNENKKDPEKKKKKEKEKEKK---KKEEKT 136

Query: 234 IEDGHPTDFPITIISEPSNPKFYW----ELPKQSKTIQIMSRA 350
            E        + +I    N  + W     LP       I++RA
Sbjct: 137 KEKKEEEKKEVVVIDPSGNTYYNWLFCITLPVMYNWTMIIARA 179
>sp|P35845|OSH1_YEAST Oxysterol-binding protein homolog 1
          Length = 1188

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
 Frame = +3

Query: 12  DNKAN--YEDPSALCGNDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEI 185
           +NK+N  Y+D +    ND+ D ++D+  +P       + S++ SL   EI   P S    
Sbjct: 447 NNKSNNDYDDNNNNNNNDDDDYDDDDESRPLIEPLPLISSRSQSL--SEITPGPHSRKST 504

Query: 186 --STETTDKPA---GENEDISIEDGH 248
             ST   D P+   G +ED S +DG+
Sbjct: 505 VSSTRAADIPSDDEGYSEDDSDDDGN 530
>sp|O94312|YH57_SCHPO PWWP domain protein C215.07c
          Length = 568

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = +3

Query: 81  EAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEISTETTDKPAGENEDISIEDGHPT 254
           E PKPKT    +    A S    + L +P S SE+S E +D+   E   I  ED + T
Sbjct: 196 EKPKPKTASLIKAYKMAQSTPDLDSLSVPSSESEVSEEESDQEMSEPSPIE-EDYNDT 252
>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
           (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
           nucleotide gated channel, photoreceptor)
           (Cyclic-nucleotide-gated cation channel 1) (Rod
           photoreceptor cGMP-gated channel alpha subunit)
          Length = 686

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
 Frame = +3

Query: 54  NDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEISTETTDKPAGENEDIS 233
           N N  SN D+ P+ K + K E KSK  S D  E     ++  E   +  DK   + E+ S
Sbjct: 87  NVNNSSNKDQEPEEKKKKKKEKKSK--SDDKNE----NKNDPEKKKKKKDKEKKKKEEKS 140

Query: 234 IEDGHPTDFPITIISEPSNPKFYW----ELPKQSKTIQIMSRA 350
            +        + +I    N  + W     LP       +++RA
Sbjct: 141 KDKKEEEKKEVVVIDPSGNTYYNWLFCITLPVMYNWTMVIARA 183
>sp|Q62927|CNGA1_RAT cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
           (CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
           nucleotide gated channel, photoreceptor)
           (Cyclic-nucleotide-gated cation channel 1) (Rod
           photoreceptor cGMP-gated channel alpha subunit)
          Length = 683

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
 Frame = +3

Query: 54  NDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLP----RSHSEISTETTDKPAGEN 221
           N N  SN D+ PK K + K E KSKA   D  E    P    +   E   +  +KP  + 
Sbjct: 82  NVNNSSNKDQDPKEKKKKKKEKKSKAD--DKKESKKDPEKKKKKEKEKEKKKEEKPKEKK 139

Query: 222 EDISIEDGHPTDFPITIISEPSNPKFYW----ELPKQSKTIQIMSRA 350
           E+   E        + +I    N  + W     LP       I++RA
Sbjct: 140 EEEKKE--------VVVIDPSGNMYYNWLFCITLPVMYNWTMIIARA 178
>sp|P38177|YBI6_YEAST Hypothetical 52.0 kDa protein in RPL23A-BOB1 intergenic region
          Length = 466

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 168 RSHSEISTETTDKPAGENEDI-SIEDGHPTDFPITIISEPSN 290
           R+H++   E T    G ++D  S+ED +PTDF    I E  N
Sbjct: 417 RTHNDEDNENTANDKGSDKDNNSVEDNNPTDFLTDRIRENKN 458
>sp|O33845|DPOL_THEAG DNA polymerase (Pol Tfu) [Contains: Tag pol-1 intein (Tsp-TY pol-1)
            (Intein I); Tag pol-2 intein (Tsp-TY pol-2) (Intein II);
            Tag pol-3 intein (Tsp-TY pol-3) (Intein III)]
          Length = 1829

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +3

Query: 9    VDNKANYEDPSALCGNDNTDSNNDEAPKPKTRVKHEVKSKA--ASLDSGEILDLPRSHS 179
            VDN    E  +    + N +S   E  K K  ++H+ K +A    L+SG  + + R HS
Sbjct: 893  VDNTEVLEVDNIFAFSLNKESKKSEIKKVKALIRHKYKGEAYEVELNSGRKIHITRGHS 951
>sp|P24587|AK15_RAT A-kinase anchor protein 150 (AKAP 150) (cAMP-dependent protein
           kinase regulatory subunit II high affinity-binding
           protein) (P150)
          Length = 464

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 280 SDIIVIGKSVGCPSSIEISSFSPAGLSVVSVEISECDLGKSKISPE 143
           SD+ V G     P S E     P  + +   EISE D+ KSK  P+
Sbjct: 352 SDLKVNGVDAEKPRSEESKRMEPIAIIITDTEISEFDVKKSKNVPK 397
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,993,300
Number of Sequences: 369166
Number of extensions: 1432387
Number of successful extensions: 4487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4486
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)