Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_M16
(668 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49379|CBF1_KLULA Centromere-binding protein 1 (CBP-1) (... 34 0.30
sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1 33 0.88
sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha 1 (CN... 32 1.2
sp|P35845|OSH1_YEAST Oxysterol-binding protein homolog 1 32 1.2
sp|O94312|YH57_SCHPO PWWP domain protein C215.07c 32 1.5
sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha 1 (CN... 32 2.0
sp|Q62927|CNGA1_RAT cGMP-gated cation channel alpha 1 (CNG ... 31 3.4
sp|P38177|YBI6_YEAST Hypothetical 52.0 kDa protein in RPL23... 30 5.7
sp|O33845|DPOL_THEAG DNA polymerase (Pol Tfu) [Contains: Ta... 30 5.7
sp|P24587|AK15_RAT A-kinase anchor protein 150 (AKAP 150) (... 30 7.5
>sp|P49379|CBF1_KLULA Centromere-binding protein 1 (CBP-1) (Centromere-binding factor 1)
(Centromere promoter factor 1)
Length = 359
Score = 34.3 bits (77), Expect = 0.30
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +3
Query: 3 DHVDNKANYEDPSALCGNDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSE 182
DHVD +DP A+ D+ + + D+A + R K ++ S DS + S S
Sbjct: 136 DHVDIDDVDKDPDAVIDEDDDEEDEDQA--QRRRGKKNIEGTGESNDSERATKIGESGSS 193
Query: 183 ISTETTDKPAGENEDISIEDGHPTD 257
T D +G+ ED S DG D
Sbjct: 194 NETAGAD-GSGDREDGSQPDGTEHD 217
>sp|Q8RXF1|SF3A1_ARATH Probable splicing factor 3 subunit 1
Length = 785
Score = 32.7 bits (73), Expect = 0.88
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +3
Query: 57 DNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEISTETTD--------KPA 212
D D ++E P P T + +SKA++++ EI++ P E+ + + + A
Sbjct: 313 DFADEEDEELPPPMTLDEVIRRSKASAMEEDEIVE-PGKEVEMEMDEEEVKLVAEGMRAA 371
Query: 213 GENEDISIEDGHPTDFPITIISEPSNPK 296
E++ IE+ H + P+ I+ P+
Sbjct: 372 NLEENVKIENVHDEEAPMRIVKNWKRPE 399
>sp|P29974|CNGA1_MOUSE cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
(CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
nucleotide gated channel, photoreceptor)
(Cyclic-nucleotide-gated cation channel 1) (Rod
photoreceptor cGMP-gated channel alpha subunit)
Length = 684
Score = 32.3 bits (72), Expect = 1.2
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Frame = +3
Query: 54 NDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEISTETTDKPAGENEDIS 233
N N SN D+ PK K + K E KSKA D E P + E K + E+ +
Sbjct: 82 NVNNSSNKDQEPKEKKKKKKEKKSKAD--DKNENKKDPEKKKKKEKEKEKK---KKEEKT 136
Query: 234 IEDGHPTDFPITIISEPSNPKFYW----ELPKQSKTIQIMSRA 350
E + +I N + W LP I++RA
Sbjct: 137 KEKKEEEKKEVVVIDPSGNTYYNWLFCITLPVMYNWTMIIARA 179
>sp|P35845|OSH1_YEAST Oxysterol-binding protein homolog 1
Length = 1188
Score = 32.3 bits (72), Expect = 1.2
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +3
Query: 12 DNKAN--YEDPSALCGNDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEI 185
+NK+N Y+D + ND+ D ++D+ +P + S++ SL EI P S
Sbjct: 447 NNKSNNDYDDNNNNNNNDDDDYDDDDESRPLIEPLPLISSRSQSL--SEITPGPHSRKST 504
Query: 186 --STETTDKPA---GENEDISIEDGH 248
ST D P+ G +ED S +DG+
Sbjct: 505 VSSTRAADIPSDDEGYSEDDSDDDGN 530
>sp|O94312|YH57_SCHPO PWWP domain protein C215.07c
Length = 568
Score = 32.0 bits (71), Expect = 1.5
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 81 EAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEISTETTDKPAGENEDISIEDGHPT 254
E PKPKT + A S + L +P S SE+S E +D+ E I ED + T
Sbjct: 196 EKPKPKTASLIKAYKMAQSTPDLDSLSVPSSESEVSEEESDQEMSEPSPIE-EDYNDT 252
>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
(CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
nucleotide gated channel, photoreceptor)
(Cyclic-nucleotide-gated cation channel 1) (Rod
photoreceptor cGMP-gated channel alpha subunit)
Length = 686
Score = 31.6 bits (70), Expect = 2.0
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = +3
Query: 54 NDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLPRSHSEISTETTDKPAGENEDIS 233
N N SN D+ P+ K + K E KSK S D E ++ E + DK + E+ S
Sbjct: 87 NVNNSSNKDQEPEEKKKKKKEKKSK--SDDKNE----NKNDPEKKKKKKDKEKKKKEEKS 140
Query: 234 IEDGHPTDFPITIISEPSNPKFYW----ELPKQSKTIQIMSRA 350
+ + +I N + W LP +++RA
Sbjct: 141 KDKKEEEKKEVVVIDPSGNTYYNWLFCITLPVMYNWTMVIARA 183
>sp|Q62927|CNGA1_RAT cGMP-gated cation channel alpha 1 (CNG channel alpha 1) (CNG-1)
(CNG1) (Cyclic nucleotide gated channel alpha 1) (Cyclic
nucleotide gated channel, photoreceptor)
(Cyclic-nucleotide-gated cation channel 1) (Rod
photoreceptor cGMP-gated channel alpha subunit)
Length = 683
Score = 30.8 bits (68), Expect = 3.4
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Frame = +3
Query: 54 NDNTDSNNDEAPKPKTRVKHEVKSKAASLDSGEILDLP----RSHSEISTETTDKPAGEN 221
N N SN D+ PK K + K E KSKA D E P + E + +KP +
Sbjct: 82 NVNNSSNKDQDPKEKKKKKKEKKSKAD--DKKESKKDPEKKKKKEKEKEKKKEEKPKEKK 139
Query: 222 EDISIEDGHPTDFPITIISEPSNPKFYW----ELPKQSKTIQIMSRA 350
E+ E + +I N + W LP I++RA
Sbjct: 140 EEEKKE--------VVVIDPSGNMYYNWLFCITLPVMYNWTMIIARA 178
>sp|P38177|YBI6_YEAST Hypothetical 52.0 kDa protein in RPL23A-BOB1 intergenic region
Length = 466
Score = 30.0 bits (66), Expect = 5.7
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 168 RSHSEISTETTDKPAGENEDI-SIEDGHPTDFPITIISEPSN 290
R+H++ E T G ++D S+ED +PTDF I E N
Sbjct: 417 RTHNDEDNENTANDKGSDKDNNSVEDNNPTDFLTDRIRENKN 458
>sp|O33845|DPOL_THEAG DNA polymerase (Pol Tfu) [Contains: Tag pol-1 intein (Tsp-TY pol-1)
(Intein I); Tag pol-2 intein (Tsp-TY pol-2) (Intein II);
Tag pol-3 intein (Tsp-TY pol-3) (Intein III)]
Length = 1829
Score = 30.0 bits (66), Expect = 5.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 9 VDNKANYEDPSALCGNDNTDSNNDEAPKPKTRVKHEVKSKA--ASLDSGEILDLPRSHS 179
VDN E + + N +S E K K ++H+ K +A L+SG + + R HS
Sbjct: 893 VDNTEVLEVDNIFAFSLNKESKKSEIKKVKALIRHKYKGEAYEVELNSGRKIHITRGHS 951
>sp|P24587|AK15_RAT A-kinase anchor protein 150 (AKAP 150) (cAMP-dependent protein
kinase regulatory subunit II high affinity-binding
protein) (P150)
Length = 464
Score = 29.6 bits (65), Expect = 7.5
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 280 SDIIVIGKSVGCPSSIEISSFSPAGLSVVSVEISECDLGKSKISPE 143
SD+ V G P S E P + + EISE D+ KSK P+
Sbjct: 352 SDLKVNGVDAEKPRSEESKRMEPIAIIITDTEISEFDVKKSKNVPK 397
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,993,300
Number of Sequences: 369166
Number of extensions: 1432387
Number of successful extensions: 4487
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4486
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)