Planaria EST Database


DrC_01614

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01614
         (521 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9USV4|YHH2_SCHPO  Hypothetical protein C28F2.02 in chrom...    39   0.006
sp|Q895J8|IF2_CLOTE  Translation initiation factor IF-2            36   0.064
sp|P68875|S230_PLAFO  Transmission-blocking target antigen S...    35   0.083
sp|P42846|YN48_YEAST  Hypothetical 68.7 kDa protein in STB1-...    34   0.24 
sp|Q12080|YP46_YEAST  Hypothetical protein YPL146C                 34   0.24 
sp|P40019|YEM0_YEAST  Hypothetical 18.3 kDa protein in GAL83...    34   0.24 
sp|P13816|GARP_PLAFF  Glutamic acid-rich protein precursor         34   0.24 
sp|P16230|SRCH_RABIT  Sarcoplasmic reticulum histidine-rich ...    33   0.54 
sp|Q02455|MLP1_YEAST  Protein MLP1 (Myosin-like protein 1)         32   0.92 
sp|P22793|TRHY_SHEEP  Trichohyalin                                 32   0.92 
>sp|Q9USV4|YHH2_SCHPO Hypothetical protein C28F2.02 in chromosome II
          Length = 292

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 26/77 (33%), Positives = 38/77 (49%)
 Frame = +2

Query: 20  LTKITWETFIEWKKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQ 199
           LT +T E F +W   +R++ ++Q+    +NR           +SGRE F  N D   E  
Sbjct: 207 LTPVTEENFKKWSDGRRDRILKQAEERRSNRAVG-----RSNLSGREYFESNKDKTHEVV 261

Query: 200 DDMEEGDVVALPQRENE 250
            D E+ D  AL +RE E
Sbjct: 262 GDEEDWDFSAL-RRETE 277
>sp|Q895J8|IF2_CLOTE Translation initiation factor IF-2
          Length = 685

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
 Frame = +2

Query: 107 NREKAFRQGKHIGISGRELFAFNPDF----VRESQDDMEEGDVVALPQRENEEEEYDGPI 274
           ++ + +   K +GIS ++L +   D     V+     +EE D + + +   E +E +   
Sbjct: 5   SKVRVYELSKELGISSKDLISLLKDEFSIEVKNHMSVVEEEDALLIKEFYGESKEEN--- 61

Query: 275 REINISDYYGDMLKQNEEKMKREEKANEITVIDEDLFQAEDLDGLDDEIENLSISD 442
            E NI + YGD+ +   + +K+  K       DE+  Q E +  ++D I    +SD
Sbjct: 62  TEENIEEKYGDLQEAQIKVVKKNRKNKVKKNDDENDAQEEIVIEMEDTITVKELSD 117
>sp|P68875|S230_PLAFO Transmission-blocking target antigen S230 precursor
 sp|P68874|S230_PLAF7 Transmission-blocking target antigen S230 precursor
          Length = 3135

 Score = 35.4 bits (80), Expect = 0.083
 Identities = 22/86 (25%), Positives = 42/86 (48%)
 Frame = +2

Query: 146 ISGRELFAFNPDFVRESQDDMEEGDVVALPQRENEEEEYDGPIREINISDYYGDMLKQNE 325
           +S R+ F  + +   E +++ EE +     + E EEEEYD  + E +  +    + ++++
Sbjct: 269 MSPRDNFVIDDE--EEEEEEEEEEEEEEEEEEEEEEEEYDDYVYEESGDETEEQLQEEHQ 326

Query: 326 EKMKREEKANEITVIDEDLFQAEDLD 403
           E++  E         DED  +A D D
Sbjct: 327 EEVGAESSEESFNDEDEDSVEARDGD 352
>sp|P42846|YN48_YEAST Hypothetical 68.7 kDa protein in STB1-MCK1 intergenic region
          Length = 591

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
 Frame = +2

Query: 56  KKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQ--DDMEEGDVVA 229
           K   +E++     AE+ N E   ++GK       E+     DF  ++   D  EEG+V  
Sbjct: 353 KNDFKEEEWDNVVAELFNEEFYQQEGKPTWNEDDEIMG---DFYADADGDDQTEEGEV-- 407

Query: 230 LPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEKANEITVIDEDLFQAEDLDGL 409
             + + EE+E +GP R+            + EEK++++++  ++  + E+  +   L  L
Sbjct: 408 -EKEQKEEDEEEGPKRK----------KSKKEEKLQKKKEKRKVNELVENALEQNKL-AL 455

Query: 410 DDEIE 424
            +E+E
Sbjct: 456 IEEVE 460
>sp|Q12080|YP46_YEAST Hypothetical protein YPL146C
          Length = 455

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
 Frame = +2

Query: 191 ESQDDMEEGDVVALPQRENEEEEYDGPIREINIS-----------DYYGDMLKQNEEKMK 337
           ES  + EE +     + ENE  +  G  +EI +S            Y  +  K++EEK+K
Sbjct: 276 ESSSNEEEEEEEEENENENESTQCSGSDKEIKLSINKPVKNKKKTKYQRNKAKRHEEKVK 335

Query: 338 REEKANEI--TVID-EDLFQAEDLDGLDD-EIENLSISD*KSTPNHKMLSKYLLV 490
            +++  E+   V D E++  +E+ + L   E ++  +   K    HK+ +KY ++
Sbjct: 336 LQQELKELRQRVKDLEEVINSEETEILSAIESDSNKVKKSKKNKKHKLGTKYSVI 390
>sp|P40019|YEM0_YEAST Hypothetical 18.3 kDa protein in GAL83-YPT8 intergenic region
          Length = 160

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
 Frame = +2

Query: 59  KKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQDDMEEGDVVALPQ 238
           K++R +      AE+A  E   + G    ++  E    N   V +S+ DM++  + AL  
Sbjct: 38  KRRRRRNYDDYDAEVAKEETKAKNG----LTKSE----NNGTVEDSESDMDDAKLDALMG 89

Query: 239 RENEEEEYDGPIREINISDYYG----------DMLKQNEEKMKREEKANEITVIDEDLFQ 388
            E EEEE D  + EI+ S+             D  K  EE  K+E        +     +
Sbjct: 90  NEGEEEEDD--LAEIDTSNIITSGRRTRGKVIDYKKTAEELDKKEPSTGSKDDVGYGEKE 147

Query: 389 AEDLDGLDDEIE 424
            +D D  DD+ +
Sbjct: 148 EDDEDEEDDDFK 159
>sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor
          Length = 678

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 31/125 (24%), Positives = 52/125 (41%)
 Frame = +2

Query: 50  EWKKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQDDMEEGDVVA 229
           E  KK+  K++Q+ S E+   E+   + +                  E +++ EE +   
Sbjct: 548 EEDKKEESKEVQEESKEVQEDEEEVEEDEE---------------EEEEEEEEEEEEEEE 592

Query: 230 LPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEKANEITVIDEDLFQAEDLDGL 409
             + E EEEE +    E +  D   D     E++   EE  +E    +ED  + ED D  
Sbjct: 593 EEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEE 652

Query: 410 DDEIE 424
           D+E E
Sbjct: 653 DEEEE 657
>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein
           precursor
          Length = 852

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +2

Query: 191 ESQDDMEEGDVVALPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEKANEITVI 370
           E ++D EEG   +L Q + EEE+  G   ++     +    ++ EE+ + EE     T+I
Sbjct: 682 EDEEDEEEGHGRSLSQEDQEEEDRRGESAKVQAPLRHHREEEEEEEEEEEEEGRLPFTII 741

Query: 371 DEDLFQAEDLDGLDDE 418
              L   E   G   E
Sbjct: 742 PNPLSGREAAGGASSE 757
>sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1)
          Length = 1875

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 35/126 (27%), Positives = 57/126 (45%)
 Frame = +2

Query: 8    SRRKLTKITWETFIEWKKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFV 187
            +  K+ KI     IE KK++ EK+ ++   ++  R K+  Q   I +  R+        V
Sbjct: 1536 TEEKINKI-----IERKKEELEKEFEE---KVEERIKSMEQSGEIDVVLRKQLEAK---V 1584

Query: 188  RESQDDMEEGDVVALPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEKANEITV 367
            +E Q ++E         ++ +EE  D P    +ISD   D L+   E   REE  NE+  
Sbjct: 1585 QEKQKELENEY-----NKKLQEELKDVP-HSSHISDDERDKLRAEIESRLREEFNNELQA 1638

Query: 368  IDEDLF 385
            I +  F
Sbjct: 1639 IKKKSF 1644
>sp|P22793|TRHY_SHEEP Trichohyalin
          Length = 1549

 Score = 32.0 bits (71), Expect = 0.92
 Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
 Frame = +2

Query: 50  EWKKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQDDMEEGDVVA 229
           E +K+++E++ Q    E+  +E+  ++ + +    RE      +     + +++E + + 
Sbjct: 636 EREKRRQERERQYLEKELQRQEERLQEEEQLLREEREKRRQERERQYLEKVELQEEEQLQ 695

Query: 230 LPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEK-----ANEITVIDEDLFQAE 394
             +RE   +E +    E        + L++ +E+++RE++       E   ++E+L Q E
Sbjct: 696 REEREKRRQERERQYLEKEELQRQEERLQREKEQLQREDREKRRQVRERKYLEEELQQEE 755

Query: 395 D 397
           D
Sbjct: 756 D 756
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,422,297
Number of Sequences: 369166
Number of extensions: 1092534
Number of successful extensions: 4871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4827
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)