Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L24
(521 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9USV4|YHH2_SCHPO Hypothetical protein C28F2.02 in chrom... 39 0.006
sp|Q895J8|IF2_CLOTE Translation initiation factor IF-2 36 0.064
sp|P68875|S230_PLAFO Transmission-blocking target antigen S... 35 0.083
sp|P42846|YN48_YEAST Hypothetical 68.7 kDa protein in STB1-... 34 0.24
sp|Q12080|YP46_YEAST Hypothetical protein YPL146C 34 0.24
sp|P40019|YEM0_YEAST Hypothetical 18.3 kDa protein in GAL83... 34 0.24
sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor 34 0.24
sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich ... 33 0.54
sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1) 32 0.92
sp|P22793|TRHY_SHEEP Trichohyalin 32 0.92
>sp|Q9USV4|YHH2_SCHPO Hypothetical protein C28F2.02 in chromosome II
Length = 292
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 20 LTKITWETFIEWKKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQ 199
LT +T E F +W +R++ ++Q+ +NR +SGRE F N D E
Sbjct: 207 LTPVTEENFKKWSDGRRDRILKQAEERRSNRAVG-----RSNLSGREYFESNKDKTHEVV 261
Query: 200 DDMEEGDVVALPQRENE 250
D E+ D AL +RE E
Sbjct: 262 GDEEDWDFSAL-RRETE 277
>sp|Q895J8|IF2_CLOTE Translation initiation factor IF-2
Length = 685
Score = 35.8 bits (81), Expect = 0.064
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Frame = +2
Query: 107 NREKAFRQGKHIGISGRELFAFNPDF----VRESQDDMEEGDVVALPQRENEEEEYDGPI 274
++ + + K +GIS ++L + D V+ +EE D + + + E +E +
Sbjct: 5 SKVRVYELSKELGISSKDLISLLKDEFSIEVKNHMSVVEEEDALLIKEFYGESKEEN--- 61
Query: 275 REINISDYYGDMLKQNEEKMKREEKANEITVIDEDLFQAEDLDGLDDEIENLSISD 442
E NI + YGD+ + + +K+ K DE+ Q E + ++D I +SD
Sbjct: 62 TEENIEEKYGDLQEAQIKVVKKNRKNKVKKNDDENDAQEEIVIEMEDTITVKELSD 117
>sp|P68875|S230_PLAFO Transmission-blocking target antigen S230 precursor
sp|P68874|S230_PLAF7 Transmission-blocking target antigen S230 precursor
Length = 3135
Score = 35.4 bits (80), Expect = 0.083
Identities = 22/86 (25%), Positives = 42/86 (48%)
Frame = +2
Query: 146 ISGRELFAFNPDFVRESQDDMEEGDVVALPQRENEEEEYDGPIREINISDYYGDMLKQNE 325
+S R+ F + + E +++ EE + + E EEEEYD + E + + + ++++
Sbjct: 269 MSPRDNFVIDDE--EEEEEEEEEEEEEEEEEEEEEEEEYDDYVYEESGDETEEQLQEEHQ 326
Query: 326 EKMKREEKANEITVIDEDLFQAEDLD 403
E++ E DED +A D D
Sbjct: 327 EEVGAESSEESFNDEDEDSVEARDGD 352
>sp|P42846|YN48_YEAST Hypothetical 68.7 kDa protein in STB1-MCK1 intergenic region
Length = 591
Score = 33.9 bits (76), Expect = 0.24
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Frame = +2
Query: 56 KKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQ--DDMEEGDVVA 229
K +E++ AE+ N E ++GK E+ DF ++ D EEG+V
Sbjct: 353 KNDFKEEEWDNVVAELFNEEFYQQEGKPTWNEDDEIMG---DFYADADGDDQTEEGEV-- 407
Query: 230 LPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEKANEITVIDEDLFQAEDLDGL 409
+ + EE+E +GP R+ + EEK++++++ ++ + E+ + L L
Sbjct: 408 -EKEQKEEDEEEGPKRK----------KSKKEEKLQKKKEKRKVNELVENALEQNKL-AL 455
Query: 410 DDEIE 424
+E+E
Sbjct: 456 IEEVE 460
>sp|Q12080|YP46_YEAST Hypothetical protein YPL146C
Length = 455
Score = 33.9 bits (76), Expect = 0.24
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Frame = +2
Query: 191 ESQDDMEEGDVVALPQRENEEEEYDGPIREINIS-----------DYYGDMLKQNEEKMK 337
ES + EE + + ENE + G +EI +S Y + K++EEK+K
Sbjct: 276 ESSSNEEEEEEEEENENENESTQCSGSDKEIKLSINKPVKNKKKTKYQRNKAKRHEEKVK 335
Query: 338 REEKANEI--TVID-EDLFQAEDLDGLDD-EIENLSISD*KSTPNHKMLSKYLLV 490
+++ E+ V D E++ +E+ + L E ++ + K HK+ +KY ++
Sbjct: 336 LQQELKELRQRVKDLEEVINSEETEILSAIESDSNKVKKSKKNKKHKLGTKYSVI 390
>sp|P40019|YEM0_YEAST Hypothetical 18.3 kDa protein in GAL83-YPT8 intergenic region
Length = 160
Score = 33.9 bits (76), Expect = 0.24
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Frame = +2
Query: 59 KKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQDDMEEGDVVALPQ 238
K++R + AE+A E + G ++ E N V +S+ DM++ + AL
Sbjct: 38 KRRRRRNYDDYDAEVAKEETKAKNG----LTKSE----NNGTVEDSESDMDDAKLDALMG 89
Query: 239 RENEEEEYDGPIREINISDYYG----------DMLKQNEEKMKREEKANEITVIDEDLFQ 388
E EEEE D + EI+ S+ D K EE K+E + +
Sbjct: 90 NEGEEEEDD--LAEIDTSNIITSGRRTRGKVIDYKKTAEELDKKEPSTGSKDDVGYGEKE 147
Query: 389 AEDLDGLDDEIE 424
+D D DD+ +
Sbjct: 148 EDDEDEEDDDFK 159
>sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor
Length = 678
Score = 33.9 bits (76), Expect = 0.24
Identities = 31/125 (24%), Positives = 52/125 (41%)
Frame = +2
Query: 50 EWKKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQDDMEEGDVVA 229
E KK+ K++Q+ S E+ E+ + + E +++ EE +
Sbjct: 548 EEDKKEESKEVQEESKEVQEDEEEVEEDEE---------------EEEEEEEEEEEEEEE 592
Query: 230 LPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEKANEITVIDEDLFQAEDLDGL 409
+ E EEEE + E + D D E++ EE +E +ED + ED D
Sbjct: 593 EEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEE 652
Query: 410 DDEIE 424
D+E E
Sbjct: 653 DEEEE 657
>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 852
Score = 32.7 bits (73), Expect = 0.54
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = +2
Query: 191 ESQDDMEEGDVVALPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEKANEITVI 370
E ++D EEG +L Q + EEE+ G ++ + ++ EE+ + EE T+I
Sbjct: 682 EDEEDEEEGHGRSLSQEDQEEEDRRGESAKVQAPLRHHREEEEEEEEEEEEEGRLPFTII 741
Query: 371 DEDLFQAEDLDGLDDE 418
L E G E
Sbjct: 742 PNPLSGREAAGGASSE 757
>sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1)
Length = 1875
Score = 32.0 bits (71), Expect = 0.92
Identities = 35/126 (27%), Positives = 57/126 (45%)
Frame = +2
Query: 8 SRRKLTKITWETFIEWKKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFV 187
+ K+ KI IE KK++ EK+ ++ ++ R K+ Q I + R+ V
Sbjct: 1536 TEEKINKI-----IERKKEELEKEFEE---KVEERIKSMEQSGEIDVVLRKQLEAK---V 1584
Query: 188 RESQDDMEEGDVVALPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEKANEITV 367
+E Q ++E ++ +EE D P +ISD D L+ E REE NE+
Sbjct: 1585 QEKQKELENEY-----NKKLQEELKDVP-HSSHISDDERDKLRAEIESRLREEFNNELQA 1638
Query: 368 IDEDLF 385
I + F
Sbjct: 1639 IKKKSF 1644
>sp|P22793|TRHY_SHEEP Trichohyalin
Length = 1549
Score = 32.0 bits (71), Expect = 0.92
Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Frame = +2
Query: 50 EWKKKKREKQMQQSSAEIANREKAFRQGKHIGISGRELFAFNPDFVRESQDDMEEGDVVA 229
E +K+++E++ Q E+ +E+ ++ + + RE + + +++E + +
Sbjct: 636 EREKRRQERERQYLEKELQRQEERLQEEEQLLREEREKRRQERERQYLEKVELQEEEQLQ 695
Query: 230 LPQRENEEEEYDGPIREINISDYYGDMLKQNEEKMKREEK-----ANEITVIDEDLFQAE 394
+RE +E + E + L++ +E+++RE++ E ++E+L Q E
Sbjct: 696 REEREKRRQERERQYLEKEELQRQEERLQREKEQLQREDREKRRQVRERKYLEEELQQEE 755
Query: 395 D 397
D
Sbjct: 756 D 756
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,422,297
Number of Sequences: 369166
Number of extensions: 1092534
Number of successful extensions: 4871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4827
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)