Planaria EST Database


DrC_01613

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01613
         (303 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08960|YP07_YEAST  Hypothetical UPF0026 protein YPL207w         90   2e-18
sp|P19196|INVA_YEREN  Invasin                                      30   1.7  
sp|Q73GG3|DXR_WOLPM  1-deoxy-D-xylulose 5-phosphate reductoi...    29   3.9  
sp|P17978|VGB_STAAU  Virginiamycin B hydrolase (VGB)               28   5.1  
sp|Q60299|Y3544_METJA  Hypothetical protein MJECL44                28   8.7  
>sp|Q08960|YP07_YEAST Hypothetical UPF0026 protein YPL207w
          Length = 810

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
 Frame = +3

Query: 15  NYEIAAEHQHSNCVLLAQKKFKVNGKWHTWIDYHKFNELVQSGTDFDATEYMAPIPDWAE 194
           +Y++AAEH HSNC+L+A  KFK+NG+WHT ID+ KF  L+ SG DF   +Y+   P+WA 
Sbjct: 711 HYDLAAEHAHSNCLLIADTKFKINGEWHTHIDFDKFFVLLNSGKDFTYMDYLEKTPEWAL 770

Query: 195 YGSKEKGFNPADTR-FRKQRNHLN 263
           +G+   GF P +TR +RK +   N
Sbjct: 771 FGN--GGFAPGNTRVYRKDKKKQN 792
>sp|P19196|INVA_YEREN Invasin
          Length = 835

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 24  IAAEHQHSNCVLLAQKKFKVNGKWHTWIDYHKFNELVQSGTDFDATEYMAPIP 182
           + AE       L A   F++NG WH   D+  +NE   SG D     Y+  +P
Sbjct: 175 VGAEAWTDYLQLSANGYFRLNG-WHQSRDFADYNERPASGGDIHVKAYLPALP 226
>sp|Q73GG3|DXR_WOLPM 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP
           reductoisomerase) (1-deoxyxylulose-5-phosphate
           reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate
           synthase)
          Length = 387

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 6   RLDNYEIAAEHQHSNCVLLAQKKFKVNGKWHTWIDYHKFNELVQS--GTD 149
           R + Y++ A   HSN  LLA +   +N K+    D   + +L +S  GTD
Sbjct: 24  RKEEYQVEALSAHSNFALLAHQAKLLNAKYVAISDERLYKDLKESLLGTD 73
>sp|P17978|VGB_STAAU Virginiamycin B hydrolase (VGB)
          Length = 299

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 81  VNGKWHTWIDYHKFNELVQSGTDFDATEYMAPIPD 185
           V+ K   WI  HK N +     D   TEY  P PD
Sbjct: 22  VSDKGKVWITQHKANMISCINLDGKITEYPLPTPD 56
>sp|Q60299|Y3544_METJA Hypothetical protein MJECL44
          Length = 331

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 112 IINSMNWFNLELILMQLSIWLQFLIGQNTDLRKKVLIQQILDSENK 249
           I+ ++NWF  +  L    I ++FL  +N +  KK +I+   +  NK
Sbjct: 52  ILKALNWFGTDKPLGGDDIPVEFLGKENKEYSKKPIIEAYFEIVNK 97
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,059,930
Number of Sequences: 369166
Number of extensions: 591621
Number of successful extensions: 1658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)