Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L14
(303 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08960|YP07_YEAST Hypothetical UPF0026 protein YPL207w 90 2e-18
sp|P19196|INVA_YEREN Invasin 30 1.7
sp|Q73GG3|DXR_WOLPM 1-deoxy-D-xylulose 5-phosphate reductoi... 29 3.9
sp|P17978|VGB_STAAU Virginiamycin B hydrolase (VGB) 28 5.1
sp|Q60299|Y3544_METJA Hypothetical protein MJECL44 28 8.7
>sp|Q08960|YP07_YEAST Hypothetical UPF0026 protein YPL207w
Length = 810
Score = 89.7 bits (221), Expect = 2e-18
Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = +3
Query: 15 NYEIAAEHQHSNCVLLAQKKFKVNGKWHTWIDYHKFNELVQSGTDFDATEYMAPIPDWAE 194
+Y++AAEH HSNC+L+A KFK+NG+WHT ID+ KF L+ SG DF +Y+ P+WA
Sbjct: 711 HYDLAAEHAHSNCLLIADTKFKINGEWHTHIDFDKFFVLLNSGKDFTYMDYLEKTPEWAL 770
Query: 195 YGSKEKGFNPADTR-FRKQRNHLN 263
+G+ GF P +TR +RK + N
Sbjct: 771 FGN--GGFAPGNTRVYRKDKKKQN 792
>sp|P19196|INVA_YEREN Invasin
Length = 835
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 24 IAAEHQHSNCVLLAQKKFKVNGKWHTWIDYHKFNELVQSGTDFDATEYMAPIP 182
+ AE L A F++NG WH D+ +NE SG D Y+ +P
Sbjct: 175 VGAEAWTDYLQLSANGYFRLNG-WHQSRDFADYNERPASGGDIHVKAYLPALP 226
>sp|Q73GG3|DXR_WOLPM 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP
reductoisomerase) (1-deoxyxylulose-5-phosphate
reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate
synthase)
Length = 387
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 6 RLDNYEIAAEHQHSNCVLLAQKKFKVNGKWHTWIDYHKFNELVQS--GTD 149
R + Y++ A HSN LLA + +N K+ D + +L +S GTD
Sbjct: 24 RKEEYQVEALSAHSNFALLAHQAKLLNAKYVAISDERLYKDLKESLLGTD 73
>sp|P17978|VGB_STAAU Virginiamycin B hydrolase (VGB)
Length = 299
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 81 VNGKWHTWIDYHKFNELVQSGTDFDATEYMAPIPD 185
V+ K WI HK N + D TEY P PD
Sbjct: 22 VSDKGKVWITQHKANMISCINLDGKITEYPLPTPD 56
>sp|Q60299|Y3544_METJA Hypothetical protein MJECL44
Length = 331
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 112 IINSMNWFNLELILMQLSIWLQFLIGQNTDLRKKVLIQQILDSENK 249
I+ ++NWF + L I ++FL +N + KK +I+ + NK
Sbjct: 52 ILKALNWFGTDKPLGGDDIPVEFLGKENKEYSKKPIIEAYFEIVNK 97
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,059,930
Number of Sequences: 369166
Number of extensions: 591621
Number of successful extensions: 1658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)