Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01612 (390 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P29475|NOS1_HUMAN Nitric-oxide synthase, brain (NOS type... 32 0.45 sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A (Pa... 31 0.76 sp|O19132|NOS1_RABIT Nitric-oxide synthase, brain (NOS type... 30 1.3 sp|Q9Z0J4|NOS1_MOUSE Nitric-oxide synthase, brain (NOS type... 30 1.7 sp||Q29498_2 [Segment 2 of 2] Nitric-oxide synthase, brain ... 29 2.9 sp|P29476|NOS1_RAT Nitric-oxide synthase, brain (NOS type I... 29 3.8 sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A (... 29 3.8 sp|P35548|MSX2_HUMAN Homeobox protein MSX-2 (Hox-8) 28 6.4 sp|Q13112|CAF1B_HUMAN Chromatin assembly factor 1 subunit B... 28 8.4
>sp|P29475|NOS1_HUMAN Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS) (NC-NOS) (bNOS) Length = 1434 Score = 32.0 bits (71), Expect = 0.45 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Frame = +3 Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176 ++ L SP +++ L GSQ +Q + G+ G N + + +ALI+ +D PPV+ Sbjct: 1005 RQNLQSPKSSRSTIFVRLHTNGSQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPVN 1063
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein) Length = 281 Score = 31.2 bits (69), Expect = 0.76 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +3 Query: 3 SIKKPLMSPSELNTSVLSGPGSQPIQ 80 S+ PL+SPS L ++ SGPG QP++ Sbjct: 200 SLASPLLSPSPLPAALGSGPGPQPLK 225
>sp|O19132|NOS1_RABIT Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS) (NC-NOS) (bNOS) Length = 1435 Score = 30.4 bits (67), Expect = 1.3 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = +3 Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176 ++ L SP +++ L GSQ +Q + G+ G N + + +ALI+ +D PP + Sbjct: 1006 RQNLQSPKSSRSTIFVRLHTNGSQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPAN 1064
>sp|Q9Z0J4|NOS1_MOUSE Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS) (NC-NOS) (bNOS) Length = 1429 Score = 30.0 bits (66), Expect = 1.7 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = +3 Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVSY 179 ++ L SP +++ L G+Q +Q + G+ G N + + +ALI+ +D PP ++ Sbjct: 1000 RQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANH 1059
>sp||Q29498_2 [Segment 2 of 2] Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS) (NNOS) (Constitutive NOS) (NC-NOS) (BNOS) Length = 113 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = +3 Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176 ++ L SP +++ L G+Q +Q + G+ G N + + +ALI+ +D PP + Sbjct: 15 RQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPAN 73
>sp|P29476|NOS1_RAT Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS) (nNOS) (Constitutive NOS) (NC-NOS) (BNOS) Length = 1429 Score = 28.9 bits (63), Expect = 3.8 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = +3 Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVSY 179 ++ L SP +++ L G+Q +Q + G+ G N + + +ALI+ +D PP ++ Sbjct: 1000 RQNLQSPKFSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANH 1059
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog) Length = 280 Score = 28.9 bits (63), Expect = 3.8 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 3 SIKKPLMSPSELNTSVLSGPGSQPIQ 80 S+ P +SPS L ++ SGPG QP++ Sbjct: 199 SLASPRLSPSPLPAALGSGPGPQPLK 224
>sp|P35548|MSX2_HUMAN Homeobox protein MSX-2 (Hox-8) Length = 267 Score = 28.1 bits (61), Expect = 6.4 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +3 Query: 18 LMSPSELNTSVLSGPGSQPIQSESGNEKGSIIENSQSVS-DALIQDSDDMPPVSYQP 185 L SP E +V++GPG P +E E+ + +S S +AL+ SD PP P Sbjct: 10 LFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALM--SDKKPPKEASP 64
>sp|Q13112|CAF1B_HUMAN Chromatin assembly factor 1 subunit B (CAF-1 subunit B) (Chromatin assembly factor I p60 subunit) (CAF-I 60 kDa subunit) (CAF-Ip60) (M-phase phosphoprotein 7) Length = 559 Score = 27.7 bits (60), Expect = 8.4 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%) Frame = +3 Query: 27 PSELNTSVLSGPGSQPIQSES-GNEKGS 107 PS + TSV+S P ++ IQSE+ G+ +GS Sbjct: 511 PSSVPTSVISTPSTEEIQSETPGDAQGS 538
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,481,514 Number of Sequences: 369166 Number of extensions: 700325 Number of successful extensions: 1652 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1632 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1652 length of database: 68,354,980 effective HSP length: 96 effective length of database: 50,620,420 effective search space used: 1670473860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)