Planaria EST Database


DrC_01612

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01612
         (390 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29475|NOS1_HUMAN  Nitric-oxide synthase, brain (NOS type...    32   0.45 
sp|Q62782|PHX2A_RAT  Paired mesoderm homeobox protein 2A (Pa...    31   0.76 
sp|O19132|NOS1_RABIT  Nitric-oxide synthase, brain (NOS type...    30   1.3  
sp|Q9Z0J4|NOS1_MOUSE  Nitric-oxide synthase, brain (NOS type...    30   1.7  
sp||Q29498_2  [Segment 2 of 2] Nitric-oxide synthase, brain ...    29   2.9  
sp|P29476|NOS1_RAT  Nitric-oxide synthase, brain (NOS type I...    29   3.8  
sp|Q62066|PHX2A_MOUSE  Paired mesoderm homeobox protein 2A (...    29   3.8  
sp|P35548|MSX2_HUMAN  Homeobox protein MSX-2 (Hox-8)               28   6.4  
sp|Q13112|CAF1B_HUMAN  Chromatin assembly factor 1 subunit B...    28   8.4  
>sp|P29475|NOS1_HUMAN Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS)
            (nNOS) (Constitutive NOS) (NC-NOS) (bNOS)
          Length = 1434

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 9    KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176
            ++ L SP    +++   L   GSQ +Q + G+  G    N + + +ALI+  +D PPV+
Sbjct: 1005 RQNLQSPKSSRSTIFVRLHTNGSQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPVN 1063
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (Aristaless homeobox protein homolog) (ARIX1 homeodomain
           protein)
          Length = 281

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 3   SIKKPLMSPSELNTSVLSGPGSQPIQ 80
           S+  PL+SPS L  ++ SGPG QP++
Sbjct: 200 SLASPLLSPSPLPAALGSGPGPQPLK 225
>sp|O19132|NOS1_RABIT Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS)
            (nNOS) (Constitutive NOS) (NC-NOS) (bNOS)
          Length = 1435

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 9    KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176
            ++ L SP    +++   L   GSQ +Q + G+  G    N + + +ALI+  +D PP +
Sbjct: 1006 RQNLQSPKSSRSTIFVRLHTNGSQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPAN 1064
>sp|Q9Z0J4|NOS1_MOUSE Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS)
            (nNOS) (Constitutive NOS) (NC-NOS) (bNOS)
          Length = 1429

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 9    KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVSY 179
            ++ L SP    +++   L   G+Q +Q + G+  G    N + + +ALI+  +D PP ++
Sbjct: 1000 RQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANH 1059
>sp||Q29498_2 [Segment 2 of 2] Nitric-oxide synthase, brain (NOS type I)
           (Neuronal NOS) (N-NOS) (NNOS) (Constitutive NOS)
           (NC-NOS) (BNOS)
          Length = 113

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 9   KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176
           ++ L SP    +++   L   G+Q +Q + G+  G    N + + +ALI+  +D PP +
Sbjct: 15  RQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPAN 73
>sp|P29476|NOS1_RAT Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS)
            (nNOS) (Constitutive NOS) (NC-NOS) (BNOS)
          Length = 1429

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +3

Query: 9    KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVSY 179
            ++ L SP    +++   L   G+Q +Q + G+  G    N + + +ALI+  +D PP ++
Sbjct: 1000 RQNLQSPKFSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANH 1059
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
           (PHOX2A homeodomain protein) (Aristaless homeobox
           protein homolog)
          Length = 280

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 3   SIKKPLMSPSELNTSVLSGPGSQPIQ 80
           S+  P +SPS L  ++ SGPG QP++
Sbjct: 199 SLASPRLSPSPLPAALGSGPGPQPLK 224
>sp|P35548|MSX2_HUMAN Homeobox protein MSX-2 (Hox-8)
          Length = 267

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 18  LMSPSELNTSVLSGPGSQPIQSESGNEKGSIIENSQSVS-DALIQDSDDMPPVSYQP 185
           L SP E   +V++GPG  P  +E   E+  +  +S   S +AL+  SD  PP    P
Sbjct: 10  LFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALM--SDKKPPKEASP 64
>sp|Q13112|CAF1B_HUMAN Chromatin assembly factor 1 subunit B (CAF-1 subunit B) (Chromatin
           assembly factor I p60 subunit) (CAF-I 60 kDa subunit)
           (CAF-Ip60) (M-phase phosphoprotein 7)
          Length = 559

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +3

Query: 27  PSELNTSVLSGPGSQPIQSES-GNEKGS 107
           PS + TSV+S P ++ IQSE+ G+ +GS
Sbjct: 511 PSSVPTSVISTPSTEEIQSETPGDAQGS 538
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,481,514
Number of Sequences: 369166
Number of extensions: 700325
Number of successful extensions: 1652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)