Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L11
(390 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29475|NOS1_HUMAN Nitric-oxide synthase, brain (NOS type... 32 0.45
sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A (Pa... 31 0.76
sp|O19132|NOS1_RABIT Nitric-oxide synthase, brain (NOS type... 30 1.3
sp|Q9Z0J4|NOS1_MOUSE Nitric-oxide synthase, brain (NOS type... 30 1.7
sp||Q29498_2 [Segment 2 of 2] Nitric-oxide synthase, brain ... 29 2.9
sp|P29476|NOS1_RAT Nitric-oxide synthase, brain (NOS type I... 29 3.8
sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A (... 29 3.8
sp|P35548|MSX2_HUMAN Homeobox protein MSX-2 (Hox-8) 28 6.4
sp|Q13112|CAF1B_HUMAN Chromatin assembly factor 1 subunit B... 28 8.4
>sp|P29475|NOS1_HUMAN Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS)
(nNOS) (Constitutive NOS) (NC-NOS) (bNOS)
Length = 1434
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +3
Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176
++ L SP +++ L GSQ +Q + G+ G N + + +ALI+ +D PPV+
Sbjct: 1005 RQNLQSPKSSRSTIFVRLHTNGSQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPVN 1063
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
(Aristaless homeobox protein homolog) (ARIX1 homeodomain
protein)
Length = 281
Score = 31.2 bits (69), Expect = 0.76
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 3 SIKKPLMSPSELNTSVLSGPGSQPIQ 80
S+ PL+SPS L ++ SGPG QP++
Sbjct: 200 SLASPLLSPSPLPAALGSGPGPQPLK 225
>sp|O19132|NOS1_RABIT Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS)
(nNOS) (Constitutive NOS) (NC-NOS) (bNOS)
Length = 1435
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176
++ L SP +++ L GSQ +Q + G+ G N + + +ALI+ +D PP +
Sbjct: 1006 RQNLQSPKSSRSTIFVRLHTNGSQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPAN 1064
>sp|Q9Z0J4|NOS1_MOUSE Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS)
(nNOS) (Constitutive NOS) (NC-NOS) (bNOS)
Length = 1429
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVSY 179
++ L SP +++ L G+Q +Q + G+ G N + + +ALI+ +D PP ++
Sbjct: 1000 RQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANH 1059
>sp||Q29498_2 [Segment 2 of 2] Nitric-oxide synthase, brain (NOS type I)
(Neuronal NOS) (N-NOS) (NNOS) (Constitutive NOS)
(NC-NOS) (BNOS)
Length = 113
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVS 176
++ L SP +++ L G+Q +Q + G+ G N + + +ALI+ +D PP +
Sbjct: 15 RQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPAN 73
>sp|P29476|NOS1_RAT Nitric-oxide synthase, brain (NOS type I) (Neuronal NOS) (N-NOS)
(nNOS) (Constitutive NOS) (NC-NOS) (BNOS)
Length = 1429
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 9 KKPLMSPSELNTSV---LSGPGSQPIQSESGNEKGSIIENSQSVSDALIQDSDDMPPVSY 179
++ L SP +++ L G+Q +Q + G+ G N + + +ALI+ +D PP ++
Sbjct: 1000 RQNLQSPKFSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNHEDLVNALIERLEDAPPANH 1059
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A)
(PHOX2A homeodomain protein) (Aristaless homeobox
protein homolog)
Length = 280
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 3 SIKKPLMSPSELNTSVLSGPGSQPIQ 80
S+ P +SPS L ++ SGPG QP++
Sbjct: 199 SLASPRLSPSPLPAALGSGPGPQPLK 224
>sp|P35548|MSX2_HUMAN Homeobox protein MSX-2 (Hox-8)
Length = 267
Score = 28.1 bits (61), Expect = 6.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 18 LMSPSELNTSVLSGPGSQPIQSESGNEKGSIIENSQSVS-DALIQDSDDMPPVSYQP 185
L SP E +V++GPG P +E E+ + +S S +AL+ SD PP P
Sbjct: 10 LFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEALM--SDKKPPKEASP 64
>sp|Q13112|CAF1B_HUMAN Chromatin assembly factor 1 subunit B (CAF-1 subunit B) (Chromatin
assembly factor I p60 subunit) (CAF-I 60 kDa subunit)
(CAF-Ip60) (M-phase phosphoprotein 7)
Length = 559
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +3
Query: 27 PSELNTSVLSGPGSQPIQSES-GNEKGS 107
PS + TSV+S P ++ IQSE+ G+ +GS
Sbjct: 511 PSSVPTSVISTPSTEEIQSETPGDAQGS 538
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,481,514
Number of Sequences: 369166
Number of extensions: 700325
Number of successful extensions: 1652
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)