Planaria EST Database


DrC_01609

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01609
         (490 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O67124|RAD50_AQUAE  Probable DNA double-strand break repa...    30   2.3  
sp|Q95155|OLF2_CANFA  Olfactory receptor-like protein OLF2         29   5.1  
sp|P21249|ANT1_ONCVO  Major antigen (Myosin-like antigen)          29   6.7  
sp|P35869|AHR_HUMAN  Aryl hydrocarbon receptor precursor (Ah...    28   8.8  
sp|P54197|CHI2_COCIM  Endochitinase 2 precursor                    28   8.8  
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase
          Length = 978

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 199 NEERAIKKLWISYELDEKKIHAIIFDNVVPY--ITESIESIVNKATEIRSNLDIITEELR 372
           N E+ ++KL    E   K         V PY  I + IE I  K TE++   + +T+EL 
Sbjct: 255 NLEKEVEKLREKLEFSRK---------VAPYVPIAKRIEEIDKKLTELKVRKNKLTKELA 305

Query: 373 KLKDNI 390
            LKD +
Sbjct: 306 VLKDEL 311
>sp|Q95155|OLF2_CANFA Olfactory receptor-like protein OLF2
          Length = 311

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 232 SYELDEKKIHAIIFDNVVPYITESIESIVNKATEIRSNLDIITEELRKLKD 384
           SY LD+ KI ++ +  V+P +   I S+ NK          + E L+KLK+
Sbjct: 265 SYSLDQDKIISLFYSLVIPMLNPLIYSLRNKD---------VKEALKKLKN 306
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
          Length = 2022

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 274 DNVVPYITESIESIVNKATEIRSNLDIITEELRKLKDNIDS 396
           DN +  +  + + +VN+  E R+  D +T E   L+ N DS
Sbjct: 592 DNALKNLENTRQRLVNELEEQRTRFDTMTSEFDNLRTNYDS 632
>sp|P35869|AHR_HUMAN Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)
          Length = 848

 Score = 28.5 bits (62), Expect = 8.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 279 VVKNYGMDFLFIQFIRNPKFFNSSF 205
           ++KN G+DF  I+ ++N KFF + F
Sbjct: 542 IMKNLGIDFEDIRHMQNEKFFRNDF 566
>sp|P54197|CHI2_COCIM Endochitinase 2 precursor
          Length = 860

 Score = 28.5 bits (62), Expect = 8.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 282 HVVKNYGMDFLFIQFIRNP 226
           H + N   DF+FIQF  NP
Sbjct: 218 HAISNSAFDFIFIQFYNNP 236
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,991,355
Number of Sequences: 369166
Number of extensions: 545975
Number of successful extensions: 1537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)