Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_L02
(490 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O67124|RAD50_AQUAE Probable DNA double-strand break repa... 30 2.3
sp|Q95155|OLF2_CANFA Olfactory receptor-like protein OLF2 29 5.1
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 29 6.7
sp|P35869|AHR_HUMAN Aryl hydrocarbon receptor precursor (Ah... 28 8.8
sp|P54197|CHI2_COCIM Endochitinase 2 precursor 28 8.8
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase
Length = 978
Score = 30.4 bits (67), Expect = 2.3
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +1
Query: 199 NEERAIKKLWISYELDEKKIHAIIFDNVVPY--ITESIESIVNKATEIRSNLDIITEELR 372
N E+ ++KL E K V PY I + IE I K TE++ + +T+EL
Sbjct: 255 NLEKEVEKLREKLEFSRK---------VAPYVPIAKRIEEIDKKLTELKVRKNKLTKELA 305
Query: 373 KLKDNI 390
LKD +
Sbjct: 306 VLKDEL 311
>sp|Q95155|OLF2_CANFA Olfactory receptor-like protein OLF2
Length = 311
Score = 29.3 bits (64), Expect = 5.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 232 SYELDEKKIHAIIFDNVVPYITESIESIVNKATEIRSNLDIITEELRKLKD 384
SY LD+ KI ++ + V+P + I S+ NK + E L+KLK+
Sbjct: 265 SYSLDQDKIISLFYSLVIPMLNPLIYSLRNKD---------VKEALKKLKN 306
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 28.9 bits (63), Expect = 6.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 274 DNVVPYITESIESIVNKATEIRSNLDIITEELRKLKDNIDS 396
DN + + + + +VN+ E R+ D +T E L+ N DS
Sbjct: 592 DNALKNLENTRQRLVNELEEQRTRFDTMTSEFDNLRTNYDS 632
>sp|P35869|AHR_HUMAN Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)
Length = 848
Score = 28.5 bits (62), Expect = 8.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 279 VVKNYGMDFLFIQFIRNPKFFNSSF 205
++KN G+DF I+ ++N KFF + F
Sbjct: 542 IMKNLGIDFEDIRHMQNEKFFRNDF 566
>sp|P54197|CHI2_COCIM Endochitinase 2 precursor
Length = 860
Score = 28.5 bits (62), Expect = 8.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 282 HVVKNYGMDFLFIQFIRNP 226
H + N DF+FIQF NP
Sbjct: 218 HAISNSAFDFIFIQFYNNP 236
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,991,355
Number of Sequences: 369166
Number of extensions: 545975
Number of successful extensions: 1537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)