Planaria EST Database


DrC_01607

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01607
         (447 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22495|POLS_IPNVN  Structural polyprotein [Contains: Majo...    32   0.64 
sp|P05844|POLS_IPNVJ  Structural polyprotein [Contains: Majo...    29   4.1  
>sp|P22495|POLS_IPNVN Structural polyprotein [Contains: Major structural protein VP2;
           Nonstructural protein VP4 (Protease); Minor structural
           protein VP3]
          Length = 972

 Score = 32.0 bits (71), Expect = 0.64
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 138 STLLKYSMLPVVSCACIPCQMSD*HLIAQDSPQIKLHINDFGYCDLIC 281
           +T LK  MLP    A IP  +++ H++ Q++    L +++ G   L+C
Sbjct: 8   ATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGILVC 55
>sp|P05844|POLS_IPNVJ Structural polyprotein [Contains: Major structural protein VP2;
           Nonstructural protein VP4 (Protease); Minor structural
           protein VP3]
          Length = 972

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 138 STLLKYSMLPVVSCACIPCQMSD*HLIAQDSPQIKLHINDFGYCDLIC 281
           +T L+  MLP    A IP  +++ H++ Q++    L +++ G   L+C
Sbjct: 8   ATYLRSIMLPENGPASIPDDITERHILKQETSSYNLEVSESGSGLLVC 55
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,465,626
Number of Sequences: 369166
Number of extensions: 682317
Number of successful extensions: 1092
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)