Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01607
(447 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22495|POLS_IPNVN Structural polyprotein [Contains: Majo... 32 0.64
sp|P05844|POLS_IPNVJ Structural polyprotein [Contains: Majo... 29 4.1
>sp|P22495|POLS_IPNVN Structural polyprotein [Contains: Major structural protein VP2;
Nonstructural protein VP4 (Protease); Minor structural
protein VP3]
Length = 972
Score = 32.0 bits (71), Expect = 0.64
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 138 STLLKYSMLPVVSCACIPCQMSD*HLIAQDSPQIKLHINDFGYCDLIC 281
+T LK MLP A IP +++ H++ Q++ L +++ G L+C
Sbjct: 8 ATYLKSIMLPETGPASIPDDITERHILKQETSSYNLEVSESGSGILVC 55
>sp|P05844|POLS_IPNVJ Structural polyprotein [Contains: Major structural protein VP2;
Nonstructural protein VP4 (Protease); Minor structural
protein VP3]
Length = 972
Score = 29.3 bits (64), Expect = 4.1
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 138 STLLKYSMLPVVSCACIPCQMSD*HLIAQDSPQIKLHINDFGYCDLIC 281
+T L+ MLP A IP +++ H++ Q++ L +++ G L+C
Sbjct: 8 ATYLRSIMLPENGPASIPDDITERHILKQETSSYNLEVSESGSGLLVC 55
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,465,626
Number of Sequences: 369166
Number of extensions: 682317
Number of successful extensions: 1092
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)