Planaria EST Database


DrC_01602

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01602
         (859 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BKF8|CCNL2_XENTR  Cyclin-L2                                   94   4e-19
sp|Q5ZJP9|CCNL1_CHICK  Cyclin-L1                                   94   5e-19
sp|Q9R1Q2|CCNL1_RAT  Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)         93   8e-19
sp|Q9UK58|CCNL1_HUMAN  Cyclin-L1 (Cyclin-L)                        93   8e-19
sp|Q96S94|CCNL2_HUMAN  Cyclin-L2 (Paneth cell-enhanced expre...    92   2e-18
sp|Q7ZVX0|CCNL1_BRARE  Cyclin-L1                                   91   4e-18
sp|Q9JJA7|CCNL2_MOUSE  Cyclin-L2 (Cyclin Ania-6b) (Paneth ce...    90   7e-18
sp|Q5I0H5|CCNL2_RAT  Cyclin-L2                                     90   7e-18
sp|Q6GN15|CCNL1_XENLA  Cyclin-L1                                   84   7e-16
sp|P25008|CCNC_DROME  G1/S-specific cyclin-C                       49   2e-05
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2
          Length = 497

 Score = 94.4 bits (233), Expect = 4e-19
 Identities = 53/92 (57%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
           NYMNDSLRT VF  ++PETIACACI+LAA  L+ PL    +WF +F  SEE IK ICL I
Sbjct: 199 NYMNDSLRTDVFVRFNPETIACACIFLAARTLEIPLPNRPHWFYLFGASEEDIKEICLQI 258

Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEARNQK 725
           L+LY+  K DV  LE KV   RK  IE    K
Sbjct: 259 LRLYTRKKADVALLENKV-EKRKLFIEEAKAK 289
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1
          Length = 534

 Score = 94.0 bits (232), Expect = 5e-19
 Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
           NYMNDSLRT VF  + PE+IACACIYLAA  L+ PL    +WF +F  +EE I+ ICL I
Sbjct: 232 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGTTEEEIQEICLKI 291

Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEARNQ 722
           LQLY+  K D+ +LE K+   + A  EA+ Q
Sbjct: 292 LQLYTRKKVDLSDLESKIEKKKLAIEEAKAQ 322
>sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)
          Length = 527

 Score = 93.2 bits (230), Expect = 8e-19
 Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
           NYMNDSLRT VF  + PETIACACIYLAA  LQ PL T  +WF +F  +EE I+ IC+  
Sbjct: 227 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIET 286

Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
           L+LY+  KP+   LEK+V   + A  EA+
Sbjct: 287 LRLYTRKKPNYELLEKEVEKRKVALQEAK 315
>sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 (Cyclin-L)
          Length = 526

 Score = 93.2 bits (230), Expect = 8e-19
 Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
           NYMNDSLRT VF  + PETIACACIYLAA  LQ PL T  +WF +F  +EE I+ IC+  
Sbjct: 226 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIET 285

Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
           L+LY+  KP+   LEK+V   + A  EA+
Sbjct: 286 LRLYTRKKPNYELLEKEVEKRKVALQEAK 314
>sp|Q96S94|CCNL2_HUMAN Cyclin-L2 (Paneth cell-enhanced expression protein)
          Length = 520

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 49/91 (53%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
           NYMNDSLRT VF  + PE+IACACIYLAA  L+ PL    +WF +F  +EE I+ ICL I
Sbjct: 221 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 280

Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEARNQ 722
           LQLY+  K D+  LE +V   + A  EA+ Q
Sbjct: 281 LQLYARKKVDLTHLEGEVEKRKHAIEEAKAQ 311
>sp|Q7ZVX0|CCNL1_BRARE Cyclin-L1
          Length = 498

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 47/95 (49%), Positives = 66/95 (69%), Gaps = 6/95 (6%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
           NYMND+LRT+ F  + PETIACACIYLAA  LQ PL +  +WF +F  ++E IK IC++ 
Sbjct: 205 NYMNDALRTSAFVRFEPETIACACIYLAARVLQIPLPSKPHWFLLFGATKEDIKEICINT 264

Query: 630 LQLYSLNKPDVIELEKKV----AHLRKAQIEARNQ 722
           ++LYS  KP   +LE++V      L +A+++AR Q
Sbjct: 265 MKLYSREKPHSEQLERQVEKRKIFLEEARLKARGQ 299
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enhanced expression
           protein) (PCEE)
          Length = 518

 Score = 90.1 bits (222), Expect = 7e-18
 Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
           NYMNDSLRT VF  + PE+IACACIYLAA  L+ PL    +WF +F  +EE I+ IC  I
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278

Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
           LQLY+  K D+  LE +V   + A  EA+
Sbjct: 279 LQLYTRKKVDLTHLESEVEKRKHAIEEAK 307
>sp|Q5I0H5|CCNL2_RAT Cyclin-L2
          Length = 520

 Score = 90.1 bits (222), Expect = 7e-18
 Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
           NYMNDSLRT VF  + PE+IACACIYLAA  L+ PL    +WF +F  +EE I+ IC  I
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278

Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
           LQLY+  K D+  LE +V   + A  EA+
Sbjct: 279 LQLYTRKKVDLTHLESEVEKRKHAIEEAK 307
>sp|Q6GN15|CCNL1_XENLA Cyclin-L1
          Length = 496

 Score = 83.6 bits (205), Expect = 7e-16
 Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
 Frame = +3

Query: 456 NYMNDSLRTTVFACYHPETIACACIYLA--AIHLQFPLGTNWFEIFNVSEETIKAICLSI 629
           NYMND LRT VF  +  ETIACACIYLA  A+ L  P   +WF +F  +EE I+ IC++ 
Sbjct: 206 NYMNDCLRTNVFVRFDAETIACACIYLAARALQLSLPNRPHWFLLFGATEENIQDICITT 265

Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
           L+LYS  KP+   LEK+V   + A  EA+
Sbjct: 266 LRLYSRIKPNYEFLEKEVDKRKVALQEAK 294
>sp|P25008|CCNC_DROME G1/S-specific cyclin-C
          Length = 267

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = +3

Query: 462 MNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGTNWFEIFNVSEETIKAICLSILQLY 641
           +NDSLRT V   Y P  IA AC+ +A + LQ      WF   NV  + ++ I  +I+ LY
Sbjct: 180 VNDSLRTDVCLLYPPYQIAIACLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLY 239

Query: 642 SLNK 653
            L K
Sbjct: 240 ELWK 243
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,420,720
Number of Sequences: 369166
Number of extensions: 1932558
Number of successful extensions: 4996
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4985
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)