Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_K08
(859 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5BKF8|CCNL2_XENTR Cyclin-L2 94 4e-19
sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1 94 5e-19
sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a) 93 8e-19
sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 (Cyclin-L) 93 8e-19
sp|Q96S94|CCNL2_HUMAN Cyclin-L2 (Paneth cell-enhanced expre... 92 2e-18
sp|Q7ZVX0|CCNL1_BRARE Cyclin-L1 91 4e-18
sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 (Cyclin Ania-6b) (Paneth ce... 90 7e-18
sp|Q5I0H5|CCNL2_RAT Cyclin-L2 90 7e-18
sp|Q6GN15|CCNL1_XENLA Cyclin-L1 84 7e-16
sp|P25008|CCNC_DROME G1/S-specific cyclin-C 49 2e-05
>sp|Q5BKF8|CCNL2_XENTR Cyclin-L2
Length = 497
Score = 94.4 bits (233), Expect = 4e-19
Identities = 53/92 (57%), Positives = 61/92 (66%), Gaps = 2/92 (2%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
NYMNDSLRT VF ++PETIACACI+LAA L+ PL +WF +F SEE IK ICL I
Sbjct: 199 NYMNDSLRTDVFVRFNPETIACACIFLAARTLEIPLPNRPHWFYLFGASEEDIKEICLQI 258
Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEARNQK 725
L+LY+ K DV LE KV RK IE K
Sbjct: 259 LRLYTRKKADVALLENKV-EKRKLFIEEAKAK 289
>sp|Q5ZJP9|CCNL1_CHICK Cyclin-L1
Length = 534
Score = 94.0 bits (232), Expect = 5e-19
Identities = 49/91 (53%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
NYMNDSLRT VF + PE+IACACIYLAA L+ PL +WF +F +EE I+ ICL I
Sbjct: 232 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGTTEEEIQEICLKI 291
Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEARNQ 722
LQLY+ K D+ +LE K+ + A EA+ Q
Sbjct: 292 LQLYTRKKVDLSDLESKIEKKKLAIEEAKAQ 322
>sp|Q9R1Q2|CCNL1_RAT Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)
Length = 527
Score = 93.2 bits (230), Expect = 8e-19
Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
NYMNDSLRT VF + PETIACACIYLAA LQ PL T +WF +F +EE I+ IC+
Sbjct: 227 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIET 286
Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
L+LY+ KP+ LEK+V + A EA+
Sbjct: 287 LRLYTRKKPNYELLEKEVEKRKVALQEAK 315
>sp|Q9UK58|CCNL1_HUMAN Cyclin-L1 (Cyclin-L)
Length = 526
Score = 93.2 bits (230), Expect = 8e-19
Identities = 49/89 (55%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
NYMNDSLRT VF + PETIACACIYLAA LQ PL T +WF +F +EE I+ IC+
Sbjct: 226 NYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIET 285
Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
L+LY+ KP+ LEK+V + A EA+
Sbjct: 286 LRLYTRKKPNYELLEKEVEKRKVALQEAK 314
>sp|Q96S94|CCNL2_HUMAN Cyclin-L2 (Paneth cell-enhanced expression protein)
Length = 520
Score = 92.0 bits (227), Expect = 2e-18
Identities = 49/91 (53%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
NYMNDSLRT VF + PE+IACACIYLAA L+ PL +WF +F +EE I+ ICL I
Sbjct: 221 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICLKI 280
Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEARNQ 722
LQLY+ K D+ LE +V + A EA+ Q
Sbjct: 281 LQLYARKKVDLTHLEGEVEKRKHAIEEAKAQ 311
>sp|Q7ZVX0|CCNL1_BRARE Cyclin-L1
Length = 498
Score = 90.9 bits (224), Expect = 4e-18
Identities = 47/95 (49%), Positives = 66/95 (69%), Gaps = 6/95 (6%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
NYMND+LRT+ F + PETIACACIYLAA LQ PL + +WF +F ++E IK IC++
Sbjct: 205 NYMNDALRTSAFVRFEPETIACACIYLAARVLQIPLPSKPHWFLLFGATKEDIKEICINT 264
Query: 630 LQLYSLNKPDVIELEKKV----AHLRKAQIEARNQ 722
++LYS KP +LE++V L +A+++AR Q
Sbjct: 265 MKLYSREKPHSEQLERQVEKRKIFLEEARLKARGQ 299
>sp|Q9JJA7|CCNL2_MOUSE Cyclin-L2 (Cyclin Ania-6b) (Paneth cell-enhanced expression
protein) (PCEE)
Length = 518
Score = 90.1 bits (222), Expect = 7e-18
Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
NYMNDSLRT VF + PE+IACACIYLAA L+ PL +WF +F +EE I+ IC I
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278
Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
LQLY+ K D+ LE +V + A EA+
Sbjct: 279 LQLYTRKKVDLTHLESEVEKRKHAIEEAK 307
>sp|Q5I0H5|CCNL2_RAT Cyclin-L2
Length = 520
Score = 90.1 bits (222), Expect = 7e-18
Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGT--NWFEIFNVSEETIKAICLSI 629
NYMNDSLRT VF + PE+IACACIYLAA L+ PL +WF +F +EE I+ IC I
Sbjct: 219 NYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICFKI 278
Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
LQLY+ K D+ LE +V + A EA+
Sbjct: 279 LQLYTRKKVDLTHLESEVEKRKHAIEEAK 307
>sp|Q6GN15|CCNL1_XENLA Cyclin-L1
Length = 496
Score = 83.6 bits (205), Expect = 7e-16
Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Frame = +3
Query: 456 NYMNDSLRTTVFACYHPETIACACIYLA--AIHLQFPLGTNWFEIFNVSEETIKAICLSI 629
NYMND LRT VF + ETIACACIYLA A+ L P +WF +F +EE I+ IC++
Sbjct: 206 NYMNDCLRTNVFVRFDAETIACACIYLAARALQLSLPNRPHWFLLFGATEENIQDICITT 265
Query: 630 LQLYSLNKPDVIELEKKVAHLRKAQIEAR 716
L+LYS KP+ LEK+V + A EA+
Sbjct: 266 LRLYSRIKPNYEFLEKEVDKRKVALQEAK 294
>sp|P25008|CCNC_DROME G1/S-specific cyclin-C
Length = 267
Score = 48.5 bits (114), Expect = 2e-05
Identities = 26/64 (40%), Positives = 35/64 (54%)
Frame = +3
Query: 462 MNDSLRTTVFACYHPETIACACIYLAAIHLQFPLGTNWFEIFNVSEETIKAICLSILQLY 641
+NDSLRT V Y P IA AC+ +A + LQ WF NV + ++ I +I+ LY
Sbjct: 180 VNDSLRTDVCLLYPPYQIAIACLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLY 239
Query: 642 SLNK 653
L K
Sbjct: 240 ELWK 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,420,720
Number of Sequences: 369166
Number of extensions: 1932558
Number of successful extensions: 4996
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4985
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)