Planaria EST Database


DrC_01590

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01590
         (795 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51890|LUM_CHICK  Lumican precursor (Keratan sulfate prot...    32   2.0  
sp|Q9DE67|LUM_COTJA  Lumican precursor (Keratan sulfate prot...    32   2.0  
sp|Q9PQU3|PSTB_UREPA  Phosphate import ATP-binding protein p...    31   4.4  
sp|Q9JN65|TOP1_MYCGA  DNA topoisomerase I (Omega-protein) (R...    31   4.4  
sp|Q21346|CUL6_CAEEL  Cullin-6                                     30   5.8  
sp|Q9ZJI6|YE30_HELPJ  Hypothetical UPF0036 protein JHP1323         30   5.8  
sp|P56185|YE30_HELPY  Hypothetical UPF0036 protein HP1430          30   5.8  
sp|Q9UPN3|MACF1_HUMAN  Microtubule-actin crosslinking factor...    30   7.6  
sp|O96838|FYV1_DROME  Putative FYVE finger-containing phosph...    30   7.6  
sp|Q96PK2|MACF4_HUMAN  Microtubule-actin crosslinking factor...    30   7.6  
>sp|P51890|LUM_CHICK Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
           lumican)
          Length = 343

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
 Frame = +2

Query: 110 ISDVNFCVENKISFLQ-EEVKRLSDLLNDARVEISRISQITSGDLCKQC----HSKLTHL 274
           + ++   VE  +SF Q + +  +S+ L +  +++++I++      CK      +SK+THL
Sbjct: 255 VFNITSLVELDLSFNQLKSIPTVSENLENFYLQVNKINKFPLSSFCKVVGPLTYSKITHL 314

Query: 275 NTDGN 289
             DGN
Sbjct: 315 RLDGN 319
>sp|Q9DE67|LUM_COTJA Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
           lumican)
          Length = 343

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
 Frame = +2

Query: 110 ISDVNFCVENKISFLQ-EEVKRLSDLLNDARVEISRISQITSGDLCKQC----HSKLTHL 274
           + ++   VE  +SF Q + +  +S+ L +  +++++I++      CK      +SK+THL
Sbjct: 255 VFNITSLVELDLSFNQLKSIPTVSENLENFYLQVNKINKFPLSSFCKVVGPLTYSKITHL 314

Query: 275 NTDGN 289
             DGN
Sbjct: 315 RLDGN 319
>sp|Q9PQU3|PSTB_UREPA Phosphate import ATP-binding protein pstB (Phosphate-transporting
           ATPase) (ABC phosphate transporter)
          Length = 329

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +2

Query: 443 ISTGNASSLIVQTGCSHSSTMDQLSQKDDLIECPNEEQQIYLEQQMKTLSKQIEKL 610
           I     ++ I  +GC  S+ +  L+Q +DLIE  + E +IY      T SK+I  L
Sbjct: 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYF-LGTNTRSKKISSL 159
>sp|Q9JN65|TOP1_MYCGA DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
           enzyme) (Swivelase)
          Length = 719

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 137 NKISFLQEEVKRLSDLLNDARVEISRISQITSGDLCKQCHSKLTHLNTDGNY 292
           N +S+LQ      S++LN+A+  I +  +   G  C  C S+L  +  +G Y
Sbjct: 585 NDVSYLQAFWNDFSEVLNEAKTNIVKKVEYIEGKNCPNCSSQL--VRREGRY 634
>sp|Q21346|CUL6_CAEEL Cullin-6
          Length = 729

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 50  FRESLKTHRHISMEPNDMAVISDVNFCVENKISFLQEEVKRLSDLLND 193
           F+E  ++ R++    ND+ + S  +  + +++ FL  E +RL +   D
Sbjct: 224 FQEEYRSRRYLGPSTNDLLIDSCESILISDRLKFLHSEFERLLEARKD 271
>sp|Q9ZJI6|YE30_HELPJ Hypothetical UPF0036 protein JHP1323
          Length = 692

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 50  FRESLKTHRHISMEPNDMAVIS 115
           +R +   HRHIS++PND+ +IS
Sbjct: 446 YRMATDEHRHISIKPNDLVIIS 467
>sp|P56185|YE30_HELPY Hypothetical UPF0036 protein HP1430
          Length = 689

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 50  FRESLKTHRHISMEPNDMAVIS 115
           +R +   HRHIS++PND+ +IS
Sbjct: 443 YRMATDEHRHISIKPNDLVIIS 464
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin crosslinking factor 1, isoforms 1/2/3/5 (Actin
            cross-linking family protein 7) (Macrophin-1)
            (Trabeculin-alpha) (620 kDa actin-binding protein)
            (ABP620)
          Length = 5430

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 491  HSSTMDQL-SQKDDLIECPNEEQQIYLEQQMKTLSKQIEKLPNYNSEQ 631
            H  +MD+L S + ++     EEQ+  L+++ ++L +Q E +   NSE+
Sbjct: 3766 HKDSMDELFSHRSEIFGTCGEEQKTVLQEKTESLIQQYEAISLLNSER 3813
>sp|O96838|FYV1_DROME Putative FYVE finger-containing phosphoinositide kinase
            (1-phosphatidylinositol-4-phosphate 5-kinase) (PIP5K)
            (PtdIns(4)P-5-kinase)
          Length = 1809

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 434  SGLISTGNASSLIVQTGCSHSSTMDQLSQKDDLIECPNEEQQIYLEQQMKTLSK 595
            SG I T       VQT  S   T   L +++D +ECP+E+ +         L K
Sbjct: 1260 SGTICTEELRPEQVQTADSSKVTTSSLPKENDPLECPSEDTETGASNSQTVLDK 1313
>sp|Q96PK2|MACF4_HUMAN Microtubule-actin crosslinking factor 1, isoform 4
          Length = 5938

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 491  HSSTMDQL-SQKDDLIECPNEEQQIYLEQQMKTLSKQIEKLPNYNSEQ 631
            H  +MD+L S + ++     EEQ+  L+++ ++L +Q E +   NSE+
Sbjct: 4268 HKDSMDELFSHRSEIFGTCGEEQKTVLQEKTESLIQQYEAISLLNSER 4315
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,829,081
Number of Sequences: 369166
Number of extensions: 1383383
Number of successful extensions: 3680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3678
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)