Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_H19
(795 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51890|LUM_CHICK Lumican precursor (Keratan sulfate prot... 32 2.0
sp|Q9DE67|LUM_COTJA Lumican precursor (Keratan sulfate prot... 32 2.0
sp|Q9PQU3|PSTB_UREPA Phosphate import ATP-binding protein p... 31 4.4
sp|Q9JN65|TOP1_MYCGA DNA topoisomerase I (Omega-protein) (R... 31 4.4
sp|Q21346|CUL6_CAEEL Cullin-6 30 5.8
sp|Q9ZJI6|YE30_HELPJ Hypothetical UPF0036 protein JHP1323 30 5.8
sp|P56185|YE30_HELPY Hypothetical UPF0036 protein HP1430 30 5.8
sp|Q9UPN3|MACF1_HUMAN Microtubule-actin crosslinking factor... 30 7.6
sp|O96838|FYV1_DROME Putative FYVE finger-containing phosph... 30 7.6
sp|Q96PK2|MACF4_HUMAN Microtubule-actin crosslinking factor... 30 7.6
>sp|P51890|LUM_CHICK Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
lumican)
Length = 343
Score = 32.0 bits (71), Expect = 2.0
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +2
Query: 110 ISDVNFCVENKISFLQ-EEVKRLSDLLNDARVEISRISQITSGDLCKQC----HSKLTHL 274
+ ++ VE +SF Q + + +S+ L + +++++I++ CK +SK+THL
Sbjct: 255 VFNITSLVELDLSFNQLKSIPTVSENLENFYLQVNKINKFPLSSFCKVVGPLTYSKITHL 314
Query: 275 NTDGN 289
DGN
Sbjct: 315 RLDGN 319
>sp|Q9DE67|LUM_COTJA Lumican precursor (Keratan sulfate proteoglycan lumican) (KSPG
lumican)
Length = 343
Score = 32.0 bits (71), Expect = 2.0
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Frame = +2
Query: 110 ISDVNFCVENKISFLQ-EEVKRLSDLLNDARVEISRISQITSGDLCKQC----HSKLTHL 274
+ ++ VE +SF Q + + +S+ L + +++++I++ CK +SK+THL
Sbjct: 255 VFNITSLVELDLSFNQLKSIPTVSENLENFYLQVNKINKFPLSSFCKVVGPLTYSKITHL 314
Query: 275 NTDGN 289
DGN
Sbjct: 315 RLDGN 319
>sp|Q9PQU3|PSTB_UREPA Phosphate import ATP-binding protein pstB (Phosphate-transporting
ATPase) (ABC phosphate transporter)
Length = 329
Score = 30.8 bits (68), Expect = 4.4
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 443 ISTGNASSLIVQTGCSHSSTMDQLSQKDDLIECPNEEQQIYLEQQMKTLSKQIEKL 610
I ++ I +GC S+ + L+Q +DLIE + E +IY T SK+I L
Sbjct: 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYF-LGTNTRSKKISSL 159
>sp|Q9JN65|TOP1_MYCGA DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 719
Score = 30.8 bits (68), Expect = 4.4
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 137 NKISFLQEEVKRLSDLLNDARVEISRISQITSGDLCKQCHSKLTHLNTDGNY 292
N +S+LQ S++LN+A+ I + + G C C S+L + +G Y
Sbjct: 585 NDVSYLQAFWNDFSEVLNEAKTNIVKKVEYIEGKNCPNCSSQL--VRREGRY 634
>sp|Q21346|CUL6_CAEEL Cullin-6
Length = 729
Score = 30.4 bits (67), Expect = 5.8
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +2
Query: 50 FRESLKTHRHISMEPNDMAVISDVNFCVENKISFLQEEVKRLSDLLND 193
F+E ++ R++ ND+ + S + + +++ FL E +RL + D
Sbjct: 224 FQEEYRSRRYLGPSTNDLLIDSCESILISDRLKFLHSEFERLLEARKD 271
>sp|Q9ZJI6|YE30_HELPJ Hypothetical UPF0036 protein JHP1323
Length = 692
Score = 30.4 bits (67), Expect = 5.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 50 FRESLKTHRHISMEPNDMAVIS 115
+R + HRHIS++PND+ +IS
Sbjct: 446 YRMATDEHRHISIKPNDLVIIS 467
>sp|P56185|YE30_HELPY Hypothetical UPF0036 protein HP1430
Length = 689
Score = 30.4 bits (67), Expect = 5.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 50 FRESLKTHRHISMEPNDMAVIS 115
+R + HRHIS++PND+ +IS
Sbjct: 443 YRMATDEHRHISIKPNDLVIIS 464
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin crosslinking factor 1, isoforms 1/2/3/5 (Actin
cross-linking family protein 7) (Macrophin-1)
(Trabeculin-alpha) (620 kDa actin-binding protein)
(ABP620)
Length = 5430
Score = 30.0 bits (66), Expect = 7.6
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 491 HSSTMDQL-SQKDDLIECPNEEQQIYLEQQMKTLSKQIEKLPNYNSEQ 631
H +MD+L S + ++ EEQ+ L+++ ++L +Q E + NSE+
Sbjct: 3766 HKDSMDELFSHRSEIFGTCGEEQKTVLQEKTESLIQQYEAISLLNSER 3813
>sp|O96838|FYV1_DROME Putative FYVE finger-containing phosphoinositide kinase
(1-phosphatidylinositol-4-phosphate 5-kinase) (PIP5K)
(PtdIns(4)P-5-kinase)
Length = 1809
Score = 30.0 bits (66), Expect = 7.6
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 434 SGLISTGNASSLIVQTGCSHSSTMDQLSQKDDLIECPNEEQQIYLEQQMKTLSK 595
SG I T VQT S T L +++D +ECP+E+ + L K
Sbjct: 1260 SGTICTEELRPEQVQTADSSKVTTSSLPKENDPLECPSEDTETGASNSQTVLDK 1313
>sp|Q96PK2|MACF4_HUMAN Microtubule-actin crosslinking factor 1, isoform 4
Length = 5938
Score = 30.0 bits (66), Expect = 7.6
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 491 HSSTMDQL-SQKDDLIECPNEEQQIYLEQQMKTLSKQIEKLPNYNSEQ 631
H +MD+L S + ++ EEQ+ L+++ ++L +Q E + NSE+
Sbjct: 4268 HKDSMDELFSHRSEIFGTCGEEQKTVLQEKTESLIQQYEAISLLNSER 4315
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,829,081
Number of Sequences: 369166
Number of extensions: 1383383
Number of successful extensions: 3680
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3678
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)