Planaria EST Database


DrC_01576

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01576
         (926 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CGF6|WDR47_MOUSE  WD-repeat protein 47                       259   7e-69
sp|O94967|WDR47_HUMAN  WD-repeat protein 47                       257   4e-68
sp|Q8YRI1|YY46_ANASP  Hypothetical WD-repeat protein alr3466      103   7e-22
sp|Q00808|HETE1_PODAN  Vegetatible incompatibility protein H...    97   6e-20
sp|P49695|PKWA_THECU  Probable serine/threonine-protein kina...    97   8e-20
sp|Q8YTC2|Y2800_ANASP  Hypothetical WD-repeat protein alr2800      93   1e-18
sp|P56093|TUP1_CANAL  Transcriptional repressor TUP1               89   2e-17
sp|P78706|RCO1_NEUCR  Transcriptional repressor rco-1              82   3e-15
sp|Q9UKB1|FBW1B_HUMAN  F-box/WD-repeat protein 11 (F-box/WD-...    81   5e-15
sp|O15736|TIPD_DICDI  Protein tipD                                 80   1e-14
>sp|Q8CGF6|WDR47_MOUSE WD-repeat protein 47
          Length = 920

 Score =  259 bits (662), Expect = 7e-69
 Identities = 145/309 (46%), Positives = 195/309 (63%), Gaps = 1/309 (0%)
 Frame = +1

Query: 1    RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKK 180
            RAVAF+P G+LYA+GSNSKTLR+C +P     + M  S +D         P  P V +K+
Sbjct: 611  RAVAFHPSGSLYAVGSNSKTLRVCAYP-----EKMDASAHDN--------PKQPVVRFKR 657

Query: 181  PKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLT 360
             KHH+GSIYC+AWS  G+++ATGSNDK VK+L  N  +       ++E + H G IRDL 
Sbjct: 658  NKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGP-DLEFSMHDGTIRDLA 716

Query: 361  FVQDNTKPN-LLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSA 537
            F++       +LISAGAGDC I+ TDC     L +L+GH G + ++Y+  +  ++ SGS 
Sbjct: 717  FMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTW-SGWMIASGSQ 775

Query: 538  DKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGAS 717
            DKT R WDLR  + V++V        G A ASV  DP G LLA+G EDSS  LYDIRG  
Sbjct: 776  DKTVRFWDLRVPSCVRVVGTT-FHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGR 834

Query: 718  PLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHNLREPISHVTIAEHKDKVIQ 897
             +     HS++VRSVRFS  A  LL+G YD KI ++DLQ +L + +  + + EHKDKVIQ
Sbjct: 835  MVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQ 894

Query: 898  CRWHPHEMA 924
            CRWH  +++
Sbjct: 895  CRWHTQDLS 903
>sp|O94967|WDR47_HUMAN WD-repeat protein 47
          Length = 919

 Score =  257 bits (656), Expect = 4e-68
 Identities = 144/309 (46%), Positives = 193/309 (62%), Gaps = 1/309 (0%)
 Frame = +1

Query: 1    RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKK 180
            RAVAF+P G LYA+GSNSKTLR+C +P++  I P                P  P V +K+
Sbjct: 610  RAVAFHPAGGLYAVGSNSKTLRVCAYPDV--IDPSAHET-----------PKQPVVRFKR 656

Query: 181  PKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLT 360
             KHH+GSIYC+AWS  G+++ATGSNDK VK+L  N  +       ++E + H G IRDL 
Sbjct: 657  NKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGP-DLEFSMHDGTIRDLA 715

Query: 361  FVQDNTKPN-LLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSA 537
            F++       +LISAGAGDC I+ TDC     L +L+GH G + ++Y+  +  ++ SGS 
Sbjct: 716  FMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTW-SGWMIASGSQ 774

Query: 538  DKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGAS 717
            DKT R WDLR  + V++V        G A ASV  DP G LLA+G EDSS  LYDIRG  
Sbjct: 775  DKTVRFWDLRVPSCVRVVGTT-FHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGR 833

Query: 718  PLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHNLREPISHVTIAEHKDKVIQ 897
             +     HS++VRSVRFS  A  LL+G YD KI ++DLQ +L + +  + + EHKDKVIQ
Sbjct: 834  MVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQ 893

Query: 898  CRWHPHEMA 924
            CRWH  +++
Sbjct: 894  CRWHTQDLS 902
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
          Length = 1526

 Score =  103 bits (257), Expect = 7e-22
 Identities = 79/277 (28%), Positives = 131/277 (47%)
 Frame = +1

Query: 4    AVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKP 183
            +V FNP G++ A GS+ KT+R+                      WD+    S +      
Sbjct: 1247 SVVFNPDGSMLASGSSDKTVRL----------------------WDI----SSSKCLHTF 1280

Query: 184  KHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTF 363
            + H   +  +A++ DG ++A+GS D+ V+L  ++        +       H+  +  +TF
Sbjct: 1281 QGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQG------HTSWVSSVTF 1334

Query: 364  VQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
              D T    ++++G+ D  + +   ++   L +  GH   V SV   P+  +L SGS D+
Sbjct: 1335 SPDGT----MLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQ 1390

Query: 544  TARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPL 723
            T R+W + S   +  ++  G +N  G   S+   P G LLASG +D +V L++I     L
Sbjct: 1391 TVRLWSISSGKCLYTLQ--GHNNWVG---SIVFSPDGTLLASGSDDQTVRLWNISSGECL 1445

Query: 724  NLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQ 834
                 H N VRSV FS++ L L SG  D  I L D++
Sbjct: 1446 YTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDVK 1482

 Score =  100 bits (250), Expect = 4e-21
 Identities = 76/277 (27%), Positives = 130/277 (46%)
 Frame = +1

Query: 1    RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKK 180
            R+V F+P   + A GS+ +T+R+                      WD+   SS   +Y  
Sbjct: 952  RSVVFSPNSLMLASGSSDQTVRL----------------------WDI---SSGECLYIF 986

Query: 181  PKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLT 360
             + H G +Y +A++LDG ++ATGS D+ V+L  ++    F + +       H+  +R + 
Sbjct: 987  -QGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQG------HTSCVRSVV 1039

Query: 361  FVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSAD 540
            F  D      ++++G+ D  + + D ++   L +L GH   V SV   P+  +L SG  D
Sbjct: 1040 FSSDGA----MLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDD 1095

Query: 541  KTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASP 720
            +  R+WD+ S   +  ++ + S         +   P G+ LA+G  D  V L+DI     
Sbjct: 1096 QIVRLWDISSGNCLYTLQGYTS-----WVRFLVFSPNGVTLANGSSDQIVRLWDISSKKC 1150

Query: 721  LNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDL 831
            L   + H+N V +V FS +   L SG  D  + L D+
Sbjct: 1151 LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187

 Score = 96.7 bits (239), Expect = 8e-20
 Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 1/276 (0%)
 Frame = +1

Query: 7    VAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPK 186
            VAF+P G L+A G +   +R  +     E+   K                          
Sbjct: 870  VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKG------------------------- 904

Query: 187  HHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFV 366
             H   +  + +S DG+++A+GS+D+ V+L  ++  SG  +         H+  +R + F 
Sbjct: 905  -HNSWVNSVGFSQDGKMLASGSDDQTVRLWDIS--SGQCLKT----FKGHTSRVRSVVF- 956

Query: 367  QDNTKPN-LLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
                 PN L++++G+ D  + + D ++   L    GH G VYSV    + ++L +GS D+
Sbjct: 957  ----SPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQ 1012

Query: 544  TARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPL 723
            T R+WD+ S     I +  G  +C     SV     G +LASG +D +V L+DI   + L
Sbjct: 1013 TVRLWDISSSQCFYIFQ--GHTSC---VRSVVFSSDGAMLASGSDDQTVRLWDISSGNCL 1067

Query: 724  NLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDL 831
               + H++ VRSV FS +   L SGG D  + L D+
Sbjct: 1068 YTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDI 1103

 Score = 94.4 bits (233), Expect = 4e-19
 Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 20/294 (6%)
 Frame = +1

Query: 1    RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEI---------------KPMKDSIYDG--- 126
            R+V F+P G + A G + + +R+    + N +                P   ++ +G   
Sbjct: 1078 RSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSD 1137

Query: 127  --VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGF 300
              V +WD+   SS   +Y   + H   +  +A+S DG  +A+GS D+ V+L  ++     
Sbjct: 1138 QIVRLWDI---SSKKCLYTL-QGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCL 1193

Query: 301  PVDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRG 480
             +      L  H+  +  + F  D +     +++G+ D  + + + N++  L +  GH  
Sbjct: 1194 YI------LQGHTSWVNSVVFNPDGST----LASGSSDQTVRLWEINSSKCLCTFQGHTS 1243

Query: 481  PVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLL 660
             V SV   P+ ++L SGS+DKT R+WD+ S   +   +  G  N      SV  +P G +
Sbjct: 1244 WVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQ--GHTNW---VNSVAFNPDGSM 1298

Query: 661  LASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIIL 822
            LASG  D +V L++I  +  L+  + H++ V SV FS +   L SG  D  + L
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRL 1352

 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 4/268 (1%)
 Frame = +1

Query: 40   IGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIP----SSPNVVYKKPKHHRGSIY 207
            +G N+ TL +     + E + +  ++  G +  +  +     +  N+ Y       GS+ 
Sbjct: 809  VGGNAATLLVKLNKMVLEGRDLSHTVIIGADFTNTSLRCVNFTEANLAYSVFTKILGSVL 868

Query: 208  CIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDNTKPN 387
             +A+S DG++ ATG +  IV+             +  +    H+  +  + F QD     
Sbjct: 869  TVAFSPDGKLFATGDSGGIVRFWEA------ATGKELLTCKGHNSWVNSVGFSQDGK--- 919

Query: 388  LLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLR 567
             ++++G+ D  + + D ++   L +  GH   V SV   PNS +L SGS+D+T R+WD+ 
Sbjct: 920  -MLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDIS 978

Query: 568  SQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSN 747
            S   + I +        G   SV  +  G +LA+G  D +V L+DI  +    + + H++
Sbjct: 979  SGECLYIFQ-----GHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTS 1033

Query: 748  EVRSVRFSNNALCLLSGGYDNKIILSDL 831
             VRSV FS++   L SG  D  + L D+
Sbjct: 1034 CVRSVVFSSDGAMLASGSDDQTVRLWDI 1061

 Score = 90.9 bits (224), Expect = 5e-18
 Identities = 84/297 (28%), Positives = 143/297 (48%), Gaps = 21/297 (7%)
 Frame = +1

Query: 4    AVAFNPYGNLYAIGSNSKTLRI-------CQFPNLNEIKPMKDSIY--DG---------- 126
            +VAFN  G++ A GS  +T+R+       C +        ++  ++  DG          
Sbjct: 995  SVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQ 1054

Query: 127  -VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFP 303
             V +WD+   SS N +Y   + H   +  + +S DG ++A+G +D+IV+L  ++  SG  
Sbjct: 1055 TVRLWDI---SSGNCLYTL-QGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDIS--SGNC 1108

Query: 304  VDENEVELNHHSGIIRDLTFVQDNTKPN-LLISAGAGDCKIFVTDCNTNTVLGSLTGHRG 480
            +      L  ++  +R L F      PN + ++ G+ D  + + D ++   L +L GH  
Sbjct: 1109 L----YTLQGYTSWVRFLVF-----SPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTN 1159

Query: 481  PVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLL 660
             V +V   P+   L SGS D+T R+WD+ S   + I++   S        SV  +P G  
Sbjct: 1160 WVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTS-----WVNSVVFNPDGST 1214

Query: 661  LASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDL 831
            LASG  D +V L++I  +  L   + H++ V SV F+ +   L SG  D  + L D+
Sbjct: 1215 LASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI 1271

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 20/209 (9%)
 Frame = +1

Query: 4    AVAFNPYGNLYAIGSNSKTLRICQFPNLN---------------EIKPMKDSIYDG---- 126
            +VAFNP G++ A GS  +T+R+ +  +                    P    +  G    
Sbjct: 1289 SVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQ 1348

Query: 127  -VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFP 303
             V +W +   SS   +Y     H   +  + +S DG I+A+GS D+ V+L  ++  SG  
Sbjct: 1349 TVRLWSI---SSGECLYTF-LGHTNWVGSVIFSPDGAILASGSGDQTVRLWSIS--SGKC 1402

Query: 304  VDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGP 483
            +      L  H+  +  + F  D T    L+++G+ D  + + + ++   L +L GH   
Sbjct: 1403 L----YTLQGHNNWVGSIVFSPDGT----LLASGSDDQTVRLWNISSGECLYTLHGHINS 1454

Query: 484  VYSVYSIPNSNLLVSGSADKTARIWDLRS 570
            V SV    +  +L SGS D+T ++WD+++
Sbjct: 1455 VRSVAFSSDGLILASGSDDETIKLWDVKT 1483
>sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein HET-E-1
          Length = 1356

 Score = 97.1 bits (240), Expect = 6e-20
 Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 20/295 (6%)
 Frame = +1

Query: 4    AVAFNPYGNLYAIGSNSKTLRICQFPNLN---------------EIKPMKDSIYDG---- 126
            +VAF+  G   A GS+ KT++I    +                    P ++ +  G    
Sbjct: 846  SVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDK 905

Query: 127  -VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFP 303
             +++WD    ++     +  + H G +  +A+S DG+ +A+GS+D  +K+   +  SG  
Sbjct: 906  TIKIWD----AASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIW--DAASGTC 959

Query: 304  VDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGP 483
                   L  H   +  + F  D  +    +++G+GD  I + D  + T   +L GH G 
Sbjct: 960  TQT----LEGHGSSVLSVAFSPDGQR----VASGSGDKTIKIWDTASGTCTQTLEGHGGS 1011

Query: 484  VYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLL 663
            V+SV   P+   + SGS DKT +IWD  S    Q +E       GG   SV   P G  +
Sbjct: 1012 VWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLE-----GHGGWVQSVVFSPDGQRV 1066

Query: 664  ASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSD 828
            ASG +D ++ ++D    +     + H + V SV FS +   + SG  D  I + D
Sbjct: 1067 ASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWD 1121

 Score = 92.4 bits (228), Expect = 2e-18
 Identities = 76/275 (27%), Positives = 122/275 (44%)
 Frame = +1

Query: 4    AVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKP 183
            +VAF+P G   A GS+ KT++I                      WD    ++     +  
Sbjct: 1014 SVAFSPDGQRVASGSDDKTIKI----------------------WD----TASGTCTQTL 1047

Query: 184  KHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTF 363
            + H G +  + +S DG+ +A+GS+D  +K+   + +SG         L  H   +  + F
Sbjct: 1048 EGHGGWVQSVVFSPDGQRVASGSDDHTIKIW--DAVSGTCTQT----LEGHGDSVWSVAF 1101

Query: 364  VQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
              D  +    +++G+ D  I + D  + T   +L GH G V+SV   P+   + SGS D 
Sbjct: 1102 SPDGQR----VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDG 1157

Query: 544  TARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPL 723
            T +IWD  S    Q +E  G     G   SV   P G  +ASG  D ++ ++D    +  
Sbjct: 1158 TIKIWDAASGTCTQTLEGHG-----GWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCT 1212

Query: 724  NLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSD 828
               + H   V+SV FS +   + SG  DN I + D
Sbjct: 1213 QTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWD 1247

 Score = 91.7 bits (226), Expect = 3e-18
 Identities = 64/213 (30%), Positives = 99/213 (46%)
 Frame = +1

Query: 190  HRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQ 369
            H  S+  +A+S DG+ +A+GS+DK +K+      +G         L  H G +  + F  
Sbjct: 840  HGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQT------LEGHGGSVWSVAFSP 893

Query: 370  DNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTA 549
            D  +    +++G+ D  I + D  + T   +L GH G V SV   P+   + SGS D T 
Sbjct: 894  DRER----VASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTI 949

Query: 550  RIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNL 729
            +IWD  S    Q +E  GS     +  SV   P G  +ASG  D ++ ++D    +    
Sbjct: 950  KIWDAASGTCTQTLEGHGS-----SVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQT 1004

Query: 730  CKLHSNEVRSVRFSNNALCLLSGGYDNKIILSD 828
             + H   V SV FS +   + SG  D  I + D
Sbjct: 1005 LEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWD 1037

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 42/136 (30%), Positives = 62/136 (45%)
 Frame = +1

Query: 421  IFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHF 600
            I V +   N    +L GH   V SV    +   + SGS DKT +IWD  S    Q +E  
Sbjct: 823  ISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLE-- 880

Query: 601  GSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNA 780
                 GG+  SV   P    +ASG +D ++ ++D    +     + H   V+SV FS + 
Sbjct: 881  ---GHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDG 937

Query: 781  LCLLSGGYDNKIILSD 828
              + SG  D+ I + D
Sbjct: 938  QRVASGSDDHTIKIWD 953
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
          Length = 742

 Score = 96.7 bits (239), Expect = 8e-20
 Identities = 85/310 (27%), Positives = 134/310 (43%), Gaps = 7/310 (2%)
 Frame = +1

Query: 4    AVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKP 183
            AVAF+P G+L A GS  K                       + VWDV      + +    
Sbjct: 464  AVAFSPGGSLLAGGSGDKL----------------------IHVWDVASGDELHTL---- 497

Query: 184  KHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTF 363
            + H   +  +A+S DG ++A+GS+D  V+L  V         E       H+  + D+ F
Sbjct: 498  EGHTDWVRAVAFSPDGALLASGSDDATVRLWDV------AAAEERAVFEGHTHYVLDIAF 551

Query: 364  VQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
              D +    ++++G+ D    + +  T T    L GH   VY+V   P+ +++ SGS D 
Sbjct: 552  SPDGS----MVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDG 607

Query: 544  TARIWDLRS-------QAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYD 702
            T R+WD+ +       QAP + V             S+   P G +L  G  DS+V L+D
Sbjct: 608  TIRLWDVATGKERDVLQAPAENV------------VSLAFSPDGSMLVHG-SDSTVHLWD 654

Query: 703  IRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHNLREPISHVTIAEHK 882
            +     L+  + H++ VR+V FS +   L SG  D  I L D    +     H T+  H 
Sbjct: 655  VASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWD----VAAQEEHTTLEGHT 710

Query: 883  DKVIQCRWHP 912
            + V    +HP
Sbjct: 711  EPVHSVAFHP 720

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 63/248 (25%), Positives = 94/248 (37%), Gaps = 57/248 (22%)
 Frame = +1

Query: 1    RAVAFNPYGNLYAIGSNSKTLRICQFPNLNE---------------IKPMKDSIYDG--- 126
            RAVAF+P G L A GS+  T+R+       E                 P    +  G   
Sbjct: 505  RAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRD 564

Query: 127  --VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGF 300
                +W+V   +   V+    K H   +Y +A+S DG ++A+GS D  ++L  V   +G 
Sbjct: 565  GTARLWNVATGTEHAVL----KGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDV--ATGK 618

Query: 301  PVD------ENEVEL-------------------------------NHHSGIIRDLTFVQ 369
              D      EN V L                                 H+  +R + F  
Sbjct: 619  ERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEALHTFEGHTDWVRAVAFSP 678

Query: 370  DNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTA 549
            D      L+++G+ D  I + D        +L GH  PV+SV   P    L S S D T 
Sbjct: 679  DGA----LLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTI 734

Query: 550  RIWDLRSQ 573
            RIW + ++
Sbjct: 735  RIWPIATE 742
>sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800
          Length = 1258

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 74/290 (25%), Positives = 128/290 (44%), Gaps = 20/290 (6%)
 Frame = +1

Query: 7    VAFNPYGNLYAIGSNSKTLRICQFPN---LNEIKPMKDSIY-----------------DG 126
            VAF+P   + A GSN KT+++  +     ++ ++   D IY                   
Sbjct: 942  VAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSS 1001

Query: 127  VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPV 306
            V +W++    S    ++    H   +Y + +   G+IIATGS D  VKL  ++       
Sbjct: 1002 VRLWNI----STGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNIS------T 1051

Query: 307  DENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPV 486
             +    L+ HS  I  + +  D      L+++ + D  + + DC T   +G L GH   V
Sbjct: 1052 GQCLKTLSEHSDKILGMAWSPDGQ----LLASASADQSVRLWDCCTGRCVGILRGHSNRV 1107

Query: 487  YSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLA 666
            YS    PN  ++ + S D+T +IWD +    ++ +   G  N       +   P G +LA
Sbjct: 1108 YSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLT--GHTNW---VFDIAFSPDGKILA 1162

Query: 667  SGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKI 816
            S   D +V ++D+      ++C  H++ V SV FS +   + SG  D  +
Sbjct: 1163 SASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTV 1212

 Score = 90.5 bits (223), Expect = 6e-18
 Identities = 73/277 (26%), Positives = 120/277 (43%)
 Frame = +1

Query: 4    AVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKP 183
            +VAF+P G   A  S  KT+++                      WD+          +  
Sbjct: 731  SVAFHPDGETLASASGDKTIKL----------------------WDIQ----DGTCLQTL 764

Query: 184  KHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTF 363
              H   + C+A+S DG  +A+ + D  +KL  V+             L  H+G +R + F
Sbjct: 765  TGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRT------LKSHTGWVRSVAF 818

Query: 364  VQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
              D       +++G+GD  I + + +T   L +  GH   VYS+   P+S +LVSGS D+
Sbjct: 819  SADGQT----LASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDR 874

Query: 544  TARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPL 723
            T ++WD ++   ++ +    ++ C  AF+     P G  LA    D SV L++ R    L
Sbjct: 875  TIKLWDCQTHICIKTLHGHTNEVCSVAFS-----PDGQTLACVSLDQSVRLWNCRTGQCL 929

Query: 724  NLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQ 834
                 +++    V FS +   L SG  D  + L D Q
Sbjct: 930  KAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQ 966

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 20/324 (6%)
 Frame = +1

Query: 1    RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSI---------YDG--------- 126
            R VAF+P GN  A  +   T+++        ++ +K             DG         
Sbjct: 772  RCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGD 831

Query: 127  --VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGF 300
              +++W+ H         K    H  S+Y IA+S D +I+ +GS D+ +KL         
Sbjct: 832  RTIKIWNYHTGEC----LKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICI 887

Query: 301  PVDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRG 480
                    L+ H+  +  + F  D       ++  + D  + + +C T   L +  G+  
Sbjct: 888  KT------LHGHTNEVCSVAFSPDGQT----LACVSLDQSVRLWNCRTGQCLKAWYGNTD 937

Query: 481  PVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLL 660
                V   P+  +L SGS DKT ++WD ++   +  +E       G AF+     P    
Sbjct: 938  WALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFS-----PDSQT 992

Query: 661  LASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHN 840
            LAS   DSSV L++I       +   H++ V +V F      + +G  D  + L     N
Sbjct: 993  LASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKL----WN 1048

Query: 841  LREPISHVTIAEHKDKVIQCRWHP 912
            +       T++EH DK++   W P
Sbjct: 1049 ISTGQCLKTLSEHSDKILGMAWSP 1072

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 64/208 (30%), Positives = 95/208 (45%), Gaps = 1/208 (0%)
 Frame = +1

Query: 196  GSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDN 375
            G+I   A+S +G+++AT   D  V++  V   SG  +    +    HS  +R + F  D 
Sbjct: 643  GNILSAAFSPEGQLLATCDTDCHVRVWEVK--SGKLL----LICRGHSNWVRFVVFSPDG 696

Query: 376  TKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARI 555
                +L S GA D  + +        + +LTGH   V+SV   P+   L S S DKT ++
Sbjct: 697  ---EILASCGA-DENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKL 752

Query: 556  WDLRSQAPVQ-IVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLC 732
            WD++    +Q +  H     C      V   P G  LAS   D ++ L+D+     L   
Sbjct: 753  WDIQDGTCLQTLTGHTDWVRC------VAFSPDGNTLASSAADHTIKLWDVSQGKCLRTL 806

Query: 733  KLHSNEVRSVRFSNNALCLLSGGYDNKI 816
            K H+  VRSV FS +   L SG  D  I
Sbjct: 807  KSHTGWVRSVAFSADGQTLASGSGDRTI 834

 Score = 73.6 bits (179), Expect = 8e-13
 Identities = 56/208 (26%), Positives = 96/208 (46%)
 Frame = +1

Query: 211  IAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDNTKPNL 390
            +A+S D +I+A+GSNDK VKL        +   +    L  H+  I  + F  D+     
Sbjct: 942  VAFSPDRQILASGSNDKTVKLW------DWQTGKYISSLEGHTDFIYGIAFSPDSQT--- 992

Query: 391  LISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRS 570
             +++ + D  + + + +T      L  H   VY+V   P   ++ +GSAD T ++W++ +
Sbjct: 993  -LASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNIST 1051

Query: 571  QAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSNE 750
               ++ +        G A++     P G LLAS   D SV L+D      + + + HSN 
Sbjct: 1052 GQCLKTLSEHSDKILGMAWS-----PDGQLLASASADQSVRLWDCCTGRCVGILRGHSNR 1106

Query: 751  VRSVRFSNNALCLLSGGYDNKIILSDLQ 834
            V S  FS N   + +   D  + + D Q
Sbjct: 1107 VYSAIFSPNGEIIATCSTDQTVKIWDWQ 1134

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 66/241 (27%), Positives = 106/241 (43%)
 Frame = +1

Query: 190  HRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQ 369
            H   +  + +S DGEI+A+   D+ VKL  V    G  +      L  H   +  + F  
Sbjct: 683  HSNWVRFVVFSPDGEILASCGADENVKLWSVR--DGVCIKT----LTGHEHEVFSVAFHP 736

Query: 370  DNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTA 549
            D       +++ +GD  I + D    T L +LTGH   V  V   P+ N L S +AD T 
Sbjct: 737  DGET----LASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTI 792

Query: 550  RIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNL 729
            ++WD+     ++ ++        G   SV     G  LASG  D ++ +++      L  
Sbjct: 793  KLWDVSQGKCLRTLKSHT-----GWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKT 847

Query: 730  CKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHNLREPISHVTIAEHKDKVIQCRWH 909
               H+N V S+ +S ++  L+SG  D  I L D Q +    I   T+  H ++V    + 
Sbjct: 848  YIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH----ICIKTLHGHTNEVCSVAFS 903

Query: 910  P 912
            P
Sbjct: 904  P 904

 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 30/98 (30%), Positives = 49/98 (50%)
 Frame = +1

Query: 619 GAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSG 798
           G   S    P+G LLA+   D  V +++++    L +C+ HSN VR V FS +   L S 
Sbjct: 643 GNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASC 702

Query: 799 GYDNKIILSDLQHNLREPISHVTIAEHKDKVIQCRWHP 912
           G D  + L     ++R+ +   T+  H+ +V    +HP
Sbjct: 703 GADENVKL----WSVRDGVCIKTLTGHEHEVFSVAFHP 736
>sp|P56093|TUP1_CANAL Transcriptional repressor TUP1
          Length = 514

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 79/252 (31%), Positives = 117/252 (46%), Gaps = 17/252 (6%)
 Frame = +1

Query: 190 HRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNP------LSGFPVDENEVELNHHSG--I 345
           H   + C+ +S DG+ IATG N K  ++  V        L     +EN+ +    SG   
Sbjct: 201 HSSVVCCVRFSRDGKFIATGCN-KTTQVFNVTTGELVAKLIDESSNENKDDNTTASGDLY 259

Query: 346 IRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLV 525
           IR + F  D      L++ GA D  I + D +T  ++  L GH   +YS+   P+ + LV
Sbjct: 260 IRSVCFSPDGK----LLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRLV 315

Query: 526 SGSADKTARIWDLR-SQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYD 702
           SGS D++ RIWDLR SQ  + +    G         +V   P G L+A+G  D +V ++D
Sbjct: 316 SGSGDRSVRIWDLRTSQCSLTLSIEDG-------VTTVAVSPDGKLIAAGSLDRTVRVWD 368

Query: 703 I-------RGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQ-HNLREPIS 858
                   R  S       H + V SV FSNN   + SG  D  + L  L+  + ++   
Sbjct: 369 STTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQIASGSLDRTVKLWHLEGKSDKKSTC 428

Query: 859 HVTIAEHKDKVI 894
            VT   HKD V+
Sbjct: 429 EVTYIGHKDFVL 440

 Score = 73.6 bits (179), Expect = 8e-13
 Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 9/269 (3%)
 Frame = +1

Query: 1   RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKK 180
           R+V F+P G L A G+  K +RI                      WD+    S   + K 
Sbjct: 261 RSVCFSPDGKLLATGAEDKLIRI----------------------WDL----STKRIIKI 294

Query: 181 PKHHRGSIYCIAWSLDGEIIATGSNDKIVKL--LRVNPLSGFPVDENEVELNHHSGIIRD 354
            + H   IY + +  DG+ + +GS D+ V++  LR +  S        + L+   G+   
Sbjct: 295 LRGHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDLRTSQCS--------LTLSIEDGVTT- 345

Query: 355 LTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSL-------TGHRGPVYSVYSIPNS 513
              V  + K   LI+AG+ D  + V D  T  ++  L        GH   VYSV    N 
Sbjct: 346 -VAVSPDGK---LIAAGSLDRTVRVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNG 401

Query: 514 NLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVS 693
             + SGS D+T ++W L  ++  +               SVC  P    + SG +D  V 
Sbjct: 402 EQIASGSLDRTVKLWHLEGKSDKKSTCEVTYIGHKDFVLSVCCTPDNEYILSGSKDRGVI 461

Query: 694 LYDIRGASPLNLCKLHSNEVRSVRFSNNA 780
            +D    +PL + + H N V SV  S N+
Sbjct: 462 FWDQASGNPLLMLQGHRNSVISVAVSLNS 490
>sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1
          Length = 604

 Score = 81.6 bits (200), Expect = 3e-15
 Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 3/251 (1%)
 Frame = +1

Query: 88  NEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIV 267
           N IK MKD   D   +++  +P   +V       H   + C+ +S+DG+ +ATG N +  
Sbjct: 265 NHIKKMKD---DWWVIFNAAVPRVLDVELVHTLQHESVVCCVRFSMDGKYVATGCN-RSA 320

Query: 268 KLLRVNPLSGFPVDENE-VELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNT 444
           ++  V       + ++E ++L      IR + F  D       ++ GA D  I V D  +
Sbjct: 321 QIYDVETGEKLCILQDENIDLTGDL-YIRSVCFSPDGK----YLATGAEDKLIRVWDIQS 375

Query: 445 NTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGA 624
            T+  +  GH   +YS+    +   + SGS D+T R+WD+ +     ++      +    
Sbjct: 376 RTIRNTFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVL------SIEDG 429

Query: 625 FASVCTDPKGLLLASGHEDSSVSLYDIRG--ASPLNLCKLHSNEVRSVRFSNNALCLLSG 798
             +V   P    +A+G  D SV ++D+RG  A  L     H + V SV FS +   L+SG
Sbjct: 430 VTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSPDGRNLVSG 489

Query: 799 GYDNKIILSDL 831
             D  I + +L
Sbjct: 490 SLDKTIKMWEL 500

 Score = 50.1 bits (118), Expect = 9e-06
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
 Frame = +1

Query: 523 VSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFA-SVCTDPKGLLLASGHEDSSVSLY 699
           V+   +++A+I+D+ +   + I++    D  G  +  SVC  P G  LA+G ED  + ++
Sbjct: 312 VATGCNRSAQIYDVETGEKLCILQDENIDLTGDLYIRSVCFSPDGKYLATGAEDKLIRVW 371

Query: 700 DIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQ 834
           DI+  +  N    H  ++ S+ FS +   + SG  D  + L D++
Sbjct: 372 DIQSRTIRNTFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIE 416

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 13/185 (7%)
 Frame = +1

Query: 43  GSNSKTLRICQFPNLNEIKPMKDSIYDG-----VEVWDVHIPSSPNVVYKKPKHHRGSIY 207
           G N+  L I        I P K  +  G     V VWD+    +  +  + P  H+ S+Y
Sbjct: 418 GQNTSVLSIEDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERL--EGPDGHKDSVY 475

Query: 208 CIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVD---ENEVELNHHSGIIRDLTFVQDNT 378
            +A+S DG  + +GS DK +K+  ++   G P     +    +    G  RD       T
Sbjct: 476 SVAFSPDGRNLVSGSLDKTIKMWELSAPRGIPSSAPPKGGRCIKTFEG-HRDFVLSVALT 534

Query: 379 KPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIP-----NSNLLVSGSADK 543
             +  + +G+ D  +   D  T      L GH+  V SV   P           +GS D 
Sbjct: 535 PDSQWVLSGSKDRGVQFWDPRTGHTQLMLQGHKNSVISVAPSPVTGPNGVGYFATGSGDM 594

Query: 544 TARIW 558
            ARIW
Sbjct: 595 RARIW 599
>sp|Q9UKB1|FBW1B_HUMAN F-box/WD-repeat protein 11 (F-box/WD-repeat protein 1B) (F-box and
            WD-repeats protein beta-TrCP2)
          Length = 542

 Score = 80.9 bits (198), Expect = 5e-15
 Identities = 83/294 (28%), Positives = 132/294 (44%), Gaps = 8/294 (2%)
 Frame = +1

Query: 49   NSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLD 228
            NSK +   Q+ +   I  ++D+    +++WD     +     K    H GS+ C+ +  D
Sbjct: 239  NSKGVYCLQYDDEKIISGLRDN---SIKIWD----KTSLECLKVLTGHTGSVLCLQY--D 289

Query: 229  GEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGA 408
              +I TGS+D  V++  VN        E    L HH+  +  L F       N L+   +
Sbjct: 290  ERVIVTGSSDSTVRVWDVN------TGEVLNTLIHHNEAVLHLRF------SNGLMVTCS 337

Query: 409  GDCKIFVTDCNTNTVLGS---LTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRSQAP 579
             D  I V D  + T +     L GHR  V  V    +   +VS S D+T ++W   S + 
Sbjct: 338  KDRSIAVWDMASATDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW---STST 392

Query: 580  VQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSNEVRS 759
             + V        G A    C   +  L+ SG  D+++ L+DI   + L + + H   VR 
Sbjct: 393  CEFVRTLNGHKRGIA----CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 448

Query: 760  VRFSNNALCLLSGGYDNKIILSDLQHNL--REPISHV---TIAEHKDKVIQCRW 906
            +RF N    ++SG YD KI + DLQ  L  R P S +   T+ EH  +V + ++
Sbjct: 449  IRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF 500
>sp|O15736|TIPD_DICDI Protein tipD
          Length = 612

 Score = 79.7 bits (195), Expect = 1e-14
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 2/265 (0%)
 Frame = +1

Query: 46   SNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSL 225
            S S +  + + P+ N++ P+   +  GV   +  +PS      K+   H   IYC+A++ 
Sbjct: 279  SESISNLVVKLPDANDV-PIPIVLERGVFSSEAMLPSKAK---KRWTGHNSEIYCMAFNS 334

Query: 226  DGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDNTKPNLLISAG 405
             G ++ATG  DK VK+  V  +SG    + +  L   S  I  ++F  ++   ++L ++ 
Sbjct: 335  IGNLLATGGGDKCVKVWDV--ISG----QQKSTLLGASQSIVSVSFSPND--ESILGTSN 386

Query: 406  AGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQ 585
                +++ T+   +    +LTGH G VY+   I NSN +V+GS D+T ++WDL+     +
Sbjct: 387  DNSARLWNTELGRSR--HTLTGHIGKVYTGKFI-NSNRVVTGSHDRTIKLWDLQKGYCTR 443

Query: 586  IVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLN-LCKLHSNEVRSV 762
             +  F S N       V     G  LASGH D SV  +D     P   L  +H  ++ S+
Sbjct: 444  TIFCFSSCN-----DLVILGGSGTHLASGHVDHSVRFWDSNAGEPTQVLSSIHEGQITSI 498

Query: 763  RFS-NNALCLLSGGYDNKIILSDLQ 834
              S  N   +L+   D+ + + D++
Sbjct: 499  TNSPTNTNQILTNSRDHTLKIIDIR 523

 Score = 44.3 bits (103), Expect = 5e-04
 Identities = 75/309 (24%), Positives = 119/309 (38%), Gaps = 38/309 (12%)
 Frame = +1

Query: 7    VAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPK 186
            +AFN  GNL A G   K                       V+VWDV      + +    +
Sbjct: 330  MAFNSIGNLLATGGGDKC----------------------VKVWDVISGQQKSTLLGASQ 367

Query: 187  HHRGSIYCIAWSLDGEIIATGSNDKIVKLLRV--------------NPLSGFPVDENEVE 324
                SI  +++S + E I   SND   +L                    +G  ++ N V 
Sbjct: 368  ----SIVSVSFSPNDESILGTSNDNSARLWNTELGRSRHTLTGHIGKVYTGKFINSNRVV 423

Query: 325  LNHHSGIIR--DL-------TFVQDNTKPNLLISAGAG--------DCKIFVTDCNT--- 444
               H   I+  DL       T    ++  +L+I  G+G        D  +   D N    
Sbjct: 424  TGSHDRTIKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGEP 483

Query: 445  NTVLGSLTGHRGPVYSVYSIP-NSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGG 621
              VL S+  H G + S+ + P N+N +++ S D T +I D+R+   ++  +     N G 
Sbjct: 484  TQVLSSI--HEGQITSITNSPTNTNQILTNSRDHTLKIIDIRTFDTIRTFKDPEYRN-GL 540

Query: 622  AFASVCTDPKGLLLASGHEDSSVSLYD-IRGASPLNLCKLHSN--EVRSVRFSNNALCLL 792
             +      P G  +ASG  D S+ ++D   G +   L K+H+N   V    +S  A   +
Sbjct: 541  NWTKASWSPDGRYIASGSIDGSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPLANIFI 600

Query: 793  SGGYDNKII 819
            S   D  II
Sbjct: 601  SADKDKNII 609
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,370,586
Number of Sequences: 369166
Number of extensions: 2489784
Number of successful extensions: 8997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7873
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)