Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_E02
(926 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CGF6|WDR47_MOUSE WD-repeat protein 47 259 7e-69
sp|O94967|WDR47_HUMAN WD-repeat protein 47 257 4e-68
sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466 103 7e-22
sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein H... 97 6e-20
sp|P49695|PKWA_THECU Probable serine/threonine-protein kina... 97 8e-20
sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800 93 1e-18
sp|P56093|TUP1_CANAL Transcriptional repressor TUP1 89 2e-17
sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 82 3e-15
sp|Q9UKB1|FBW1B_HUMAN F-box/WD-repeat protein 11 (F-box/WD-... 81 5e-15
sp|O15736|TIPD_DICDI Protein tipD 80 1e-14
>sp|Q8CGF6|WDR47_MOUSE WD-repeat protein 47
Length = 920
Score = 259 bits (662), Expect = 7e-69
Identities = 145/309 (46%), Positives = 195/309 (63%), Gaps = 1/309 (0%)
Frame = +1
Query: 1 RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKK 180
RAVAF+P G+LYA+GSNSKTLR+C +P + M S +D P P V +K+
Sbjct: 611 RAVAFHPSGSLYAVGSNSKTLRVCAYP-----EKMDASAHDN--------PKQPVVRFKR 657
Query: 181 PKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLT 360
KHH+GSIYC+AWS G+++ATGSNDK VK+L N + ++E + H G IRDL
Sbjct: 658 NKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGP-DLEFSMHDGTIRDLA 716
Query: 361 FVQDNTKPN-LLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSA 537
F++ +LISAGAGDC I+ TDC L +L+GH G + ++Y+ + ++ SGS
Sbjct: 717 FMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTW-SGWMIASGSQ 775
Query: 538 DKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGAS 717
DKT R WDLR + V++V G A ASV DP G LLA+G EDSS LYDIRG
Sbjct: 776 DKTVRFWDLRVPSCVRVVGTT-FHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGR 834
Query: 718 PLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHNLREPISHVTIAEHKDKVIQ 897
+ HS++VRSVRFS A LL+G YD KI ++DLQ +L + + + + EHKDKVIQ
Sbjct: 835 MVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQ 894
Query: 898 CRWHPHEMA 924
CRWH +++
Sbjct: 895 CRWHTQDLS 903
>sp|O94967|WDR47_HUMAN WD-repeat protein 47
Length = 919
Score = 257 bits (656), Expect = 4e-68
Identities = 144/309 (46%), Positives = 193/309 (62%), Gaps = 1/309 (0%)
Frame = +1
Query: 1 RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKK 180
RAVAF+P G LYA+GSNSKTLR+C +P++ I P P P V +K+
Sbjct: 610 RAVAFHPAGGLYAVGSNSKTLRVCAYPDV--IDPSAHET-----------PKQPVVRFKR 656
Query: 181 PKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLT 360
KHH+GSIYC+AWS G+++ATGSNDK VK+L N + ++E + H G IRDL
Sbjct: 657 NKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGP-DLEFSMHDGTIRDLA 715
Query: 361 FVQDNTKPN-LLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSA 537
F++ +LISAGAGDC I+ TDC L +L+GH G + ++Y+ + ++ SGS
Sbjct: 716 FMEGPESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTW-SGWMIASGSQ 774
Query: 538 DKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGAS 717
DKT R WDLR + V++V G A ASV DP G LLA+G EDSS LYDIRG
Sbjct: 775 DKTVRFWDLRVPSCVRVVGTT-FHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGR 833
Query: 718 PLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHNLREPISHVTIAEHKDKVIQ 897
+ HS++VRSVRFS A LL+G YD KI ++DLQ +L + + + + EHKDKVIQ
Sbjct: 834 MVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQ 893
Query: 898 CRWHPHEMA 924
CRWH +++
Sbjct: 894 CRWHTQDLS 902
>sp|Q8YRI1|YY46_ANASP Hypothetical WD-repeat protein alr3466
Length = 1526
Score = 103 bits (257), Expect = 7e-22
Identities = 79/277 (28%), Positives = 131/277 (47%)
Frame = +1
Query: 4 AVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKP 183
+V FNP G++ A GS+ KT+R+ WD+ S +
Sbjct: 1247 SVVFNPDGSMLASGSSDKTVRL----------------------WDI----SSSKCLHTF 1280
Query: 184 KHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTF 363
+ H + +A++ DG ++A+GS D+ V+L ++ + H+ + +TF
Sbjct: 1281 QGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQG------HTSWVSSVTF 1334
Query: 364 VQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
D T ++++G+ D + + ++ L + GH V SV P+ +L SGS D+
Sbjct: 1335 SPDGT----MLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQ 1390
Query: 544 TARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPL 723
T R+W + S + ++ G +N G S+ P G LLASG +D +V L++I L
Sbjct: 1391 TVRLWSISSGKCLYTLQ--GHNNWVG---SIVFSPDGTLLASGSDDQTVRLWNISSGECL 1445
Query: 724 NLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQ 834
H N VRSV FS++ L L SG D I L D++
Sbjct: 1446 YTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDVK 1482
Score = 100 bits (250), Expect = 4e-21
Identities = 76/277 (27%), Positives = 130/277 (46%)
Frame = +1
Query: 1 RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKK 180
R+V F+P + A GS+ +T+R+ WD+ SS +Y
Sbjct: 952 RSVVFSPNSLMLASGSSDQTVRL----------------------WDI---SSGECLYIF 986
Query: 181 PKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLT 360
+ H G +Y +A++LDG ++ATGS D+ V+L ++ F + + H+ +R +
Sbjct: 987 -QGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQG------HTSCVRSVV 1039
Query: 361 FVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSAD 540
F D ++++G+ D + + D ++ L +L GH V SV P+ +L SG D
Sbjct: 1040 FSSDGA----MLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDD 1095
Query: 541 KTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASP 720
+ R+WD+ S + ++ + S + P G+ LA+G D V L+DI
Sbjct: 1096 QIVRLWDISSGNCLYTLQGYTS-----WVRFLVFSPNGVTLANGSSDQIVRLWDISSKKC 1150
Query: 721 LNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDL 831
L + H+N V +V FS + L SG D + L D+
Sbjct: 1151 LYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187
Score = 96.7 bits (239), Expect = 8e-20
Identities = 79/276 (28%), Positives = 130/276 (47%), Gaps = 1/276 (0%)
Frame = +1
Query: 7 VAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPK 186
VAF+P G L+A G + +R + E+ K
Sbjct: 870 VAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKG------------------------- 904
Query: 187 HHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFV 366
H + + +S DG+++A+GS+D+ V+L ++ SG + H+ +R + F
Sbjct: 905 -HNSWVNSVGFSQDGKMLASGSDDQTVRLWDIS--SGQCLKT----FKGHTSRVRSVVF- 956
Query: 367 QDNTKPN-LLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
PN L++++G+ D + + D ++ L GH G VYSV + ++L +GS D+
Sbjct: 957 ----SPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQ 1012
Query: 544 TARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPL 723
T R+WD+ S I + G +C SV G +LASG +D +V L+DI + L
Sbjct: 1013 TVRLWDISSSQCFYIFQ--GHTSC---VRSVVFSSDGAMLASGSDDQTVRLWDISSGNCL 1067
Query: 724 NLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDL 831
+ H++ VRSV FS + L SGG D + L D+
Sbjct: 1068 YTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDI 1103
Score = 94.4 bits (233), Expect = 4e-19
Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 20/294 (6%)
Frame = +1
Query: 1 RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEI---------------KPMKDSIYDG--- 126
R+V F+P G + A G + + +R+ + N + P ++ +G
Sbjct: 1078 RSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSD 1137
Query: 127 --VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGF 300
V +WD+ SS +Y + H + +A+S DG +A+GS D+ V+L ++
Sbjct: 1138 QIVRLWDI---SSKKCLYTL-QGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCL 1193
Query: 301 PVDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRG 480
+ L H+ + + F D + +++G+ D + + + N++ L + GH
Sbjct: 1194 YI------LQGHTSWVNSVVFNPDGST----LASGSSDQTVRLWEINSSKCLCTFQGHTS 1243
Query: 481 PVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLL 660
V SV P+ ++L SGS+DKT R+WD+ S + + G N SV +P G +
Sbjct: 1244 WVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQ--GHTNW---VNSVAFNPDGSM 1298
Query: 661 LASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIIL 822
LASG D +V L++I + L+ + H++ V SV FS + L SG D + L
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRL 1352
Score = 92.4 bits (228), Expect = 2e-18
Identities = 71/268 (26%), Positives = 127/268 (47%), Gaps = 4/268 (1%)
Frame = +1
Query: 40 IGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIP----SSPNVVYKKPKHHRGSIY 207
+G N+ TL + + E + + ++ G + + + + N+ Y GS+
Sbjct: 809 VGGNAATLLVKLNKMVLEGRDLSHTVIIGADFTNTSLRCVNFTEANLAYSVFTKILGSVL 868
Query: 208 CIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDNTKPN 387
+A+S DG++ ATG + IV+ + + H+ + + F QD
Sbjct: 869 TVAFSPDGKLFATGDSGGIVRFWEA------ATGKELLTCKGHNSWVNSVGFSQDGK--- 919
Query: 388 LLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLR 567
++++G+ D + + D ++ L + GH V SV PNS +L SGS+D+T R+WD+
Sbjct: 920 -MLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDIS 978
Query: 568 SQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSN 747
S + I + G SV + G +LA+G D +V L+DI + + + H++
Sbjct: 979 SGECLYIFQ-----GHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTS 1033
Query: 748 EVRSVRFSNNALCLLSGGYDNKIILSDL 831
VRSV FS++ L SG D + L D+
Sbjct: 1034 CVRSVVFSSDGAMLASGSDDQTVRLWDI 1061
Score = 90.9 bits (224), Expect = 5e-18
Identities = 84/297 (28%), Positives = 143/297 (48%), Gaps = 21/297 (7%)
Frame = +1
Query: 4 AVAFNPYGNLYAIGSNSKTLRI-------CQFPNLNEIKPMKDSIY--DG---------- 126
+VAFN G++ A GS +T+R+ C + ++ ++ DG
Sbjct: 995 SVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQ 1054
Query: 127 -VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFP 303
V +WD+ SS N +Y + H + + +S DG ++A+G +D+IV+L ++ SG
Sbjct: 1055 TVRLWDI---SSGNCLYTL-QGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDIS--SGNC 1108
Query: 304 VDENEVELNHHSGIIRDLTFVQDNTKPN-LLISAGAGDCKIFVTDCNTNTVLGSLTGHRG 480
+ L ++ +R L F PN + ++ G+ D + + D ++ L +L GH
Sbjct: 1109 L----YTLQGYTSWVRFLVF-----SPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTN 1159
Query: 481 PVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLL 660
V +V P+ L SGS D+T R+WD+ S + I++ S SV +P G
Sbjct: 1160 WVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTS-----WVNSVVFNPDGST 1214
Query: 661 LASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDL 831
LASG D +V L++I + L + H++ V SV F+ + L SG D + L D+
Sbjct: 1215 LASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI 1271
Score = 59.7 bits (143), Expect = 1e-08
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 20/209 (9%)
Frame = +1
Query: 4 AVAFNPYGNLYAIGSNSKTLRICQFPNLN---------------EIKPMKDSIYDG---- 126
+VAFNP G++ A GS +T+R+ + + P + G
Sbjct: 1289 SVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQ 1348
Query: 127 -VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFP 303
V +W + SS +Y H + + +S DG I+A+GS D+ V+L ++ SG
Sbjct: 1349 TVRLWSI---SSGECLYTF-LGHTNWVGSVIFSPDGAILASGSGDQTVRLWSIS--SGKC 1402
Query: 304 VDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGP 483
+ L H+ + + F D T L+++G+ D + + + ++ L +L GH
Sbjct: 1403 L----YTLQGHNNWVGSIVFSPDGT----LLASGSDDQTVRLWNISSGECLYTLHGHINS 1454
Query: 484 VYSVYSIPNSNLLVSGSADKTARIWDLRS 570
V SV + +L SGS D+T ++WD+++
Sbjct: 1455 VRSVAFSSDGLILASGSDDETIKLWDVKT 1483
>sp|Q00808|HETE1_PODAN Vegetatible incompatibility protein HET-E-1
Length = 1356
Score = 97.1 bits (240), Expect = 6e-20
Identities = 79/295 (26%), Positives = 132/295 (44%), Gaps = 20/295 (6%)
Frame = +1
Query: 4 AVAFNPYGNLYAIGSNSKTLRICQFPNLN---------------EIKPMKDSIYDG---- 126
+VAF+ G A GS+ KT++I + P ++ + G
Sbjct: 846 SVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDK 905
Query: 127 -VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFP 303
+++WD ++ + + H G + +A+S DG+ +A+GS+D +K+ + SG
Sbjct: 906 TIKIWD----AASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIW--DAASGTC 959
Query: 304 VDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGP 483
L H + + F D + +++G+GD I + D + T +L GH G
Sbjct: 960 TQT----LEGHGSSVLSVAFSPDGQR----VASGSGDKTIKIWDTASGTCTQTLEGHGGS 1011
Query: 484 VYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLL 663
V+SV P+ + SGS DKT +IWD S Q +E GG SV P G +
Sbjct: 1012 VWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLE-----GHGGWVQSVVFSPDGQRV 1066
Query: 664 ASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSD 828
ASG +D ++ ++D + + H + V SV FS + + SG D I + D
Sbjct: 1067 ASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWD 1121
Score = 92.4 bits (228), Expect = 2e-18
Identities = 76/275 (27%), Positives = 122/275 (44%)
Frame = +1
Query: 4 AVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKP 183
+VAF+P G A GS+ KT++I WD ++ +
Sbjct: 1014 SVAFSPDGQRVASGSDDKTIKI----------------------WD----TASGTCTQTL 1047
Query: 184 KHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTF 363
+ H G + + +S DG+ +A+GS+D +K+ + +SG L H + + F
Sbjct: 1048 EGHGGWVQSVVFSPDGQRVASGSDDHTIKIW--DAVSGTCTQT----LEGHGDSVWSVAF 1101
Query: 364 VQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
D + +++G+ D I + D + T +L GH G V+SV P+ + SGS D
Sbjct: 1102 SPDGQR----VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDG 1157
Query: 544 TARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPL 723
T +IWD S Q +E G G SV P G +ASG D ++ ++D +
Sbjct: 1158 TIKIWDAASGTCTQTLEGHG-----GWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCT 1212
Query: 724 NLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSD 828
+ H V+SV FS + + SG DN I + D
Sbjct: 1213 QTLEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWD 1247
Score = 91.7 bits (226), Expect = 3e-18
Identities = 64/213 (30%), Positives = 99/213 (46%)
Frame = +1
Query: 190 HRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQ 369
H S+ +A+S DG+ +A+GS+DK +K+ +G L H G + + F
Sbjct: 840 HGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQT------LEGHGGSVWSVAFSP 893
Query: 370 DNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTA 549
D + +++G+ D I + D + T +L GH G V SV P+ + SGS D T
Sbjct: 894 DRER----VASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTI 949
Query: 550 RIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNL 729
+IWD S Q +E GS + SV P G +ASG D ++ ++D +
Sbjct: 950 KIWDAASGTCTQTLEGHGS-----SVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQT 1004
Query: 730 CKLHSNEVRSVRFSNNALCLLSGGYDNKIILSD 828
+ H V SV FS + + SG D I + D
Sbjct: 1005 LEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWD 1037
Score = 62.0 bits (149), Expect = 2e-09
Identities = 42/136 (30%), Positives = 62/136 (45%)
Frame = +1
Query: 421 IFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHF 600
I V + N +L GH V SV + + SGS DKT +IWD S Q +E
Sbjct: 823 ISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLE-- 880
Query: 601 GSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNA 780
GG+ SV P +ASG +D ++ ++D + + H V+SV FS +
Sbjct: 881 ---GHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDG 937
Query: 781 LCLLSGGYDNKIILSD 828
+ SG D+ I + D
Sbjct: 938 QRVASGSDDHTIKIWD 953
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
Length = 742
Score = 96.7 bits (239), Expect = 8e-20
Identities = 85/310 (27%), Positives = 134/310 (43%), Gaps = 7/310 (2%)
Frame = +1
Query: 4 AVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKP 183
AVAF+P G+L A GS K + VWDV + +
Sbjct: 464 AVAFSPGGSLLAGGSGDKL----------------------IHVWDVASGDELHTL---- 497
Query: 184 KHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTF 363
+ H + +A+S DG ++A+GS+D V+L V E H+ + D+ F
Sbjct: 498 EGHTDWVRAVAFSPDGALLASGSDDATVRLWDV------AAAEERAVFEGHTHYVLDIAF 551
Query: 364 VQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
D + ++++G+ D + + T T L GH VY+V P+ +++ SGS D
Sbjct: 552 SPDGS----MVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDG 607
Query: 544 TARIWDLRS-------QAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYD 702
T R+WD+ + QAP + V S+ P G +L G DS+V L+D
Sbjct: 608 TIRLWDVATGKERDVLQAPAENV------------VSLAFSPDGSMLVHG-SDSTVHLWD 654
Query: 703 IRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHNLREPISHVTIAEHK 882
+ L+ + H++ VR+V FS + L SG D I L D + H T+ H
Sbjct: 655 VASGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWD----VAAQEEHTTLEGHT 710
Query: 883 DKVIQCRWHP 912
+ V +HP
Sbjct: 711 EPVHSVAFHP 720
Score = 56.2 bits (134), Expect = 1e-07
Identities = 63/248 (25%), Positives = 94/248 (37%), Gaps = 57/248 (22%)
Frame = +1
Query: 1 RAVAFNPYGNLYAIGSNSKTLRICQFPNLNE---------------IKPMKDSIYDG--- 126
RAVAF+P G L A GS+ T+R+ E P + G
Sbjct: 505 RAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAFSPDGSMVASGSRD 564
Query: 127 --VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGF 300
+W+V + V+ K H +Y +A+S DG ++A+GS D ++L V +G
Sbjct: 565 GTARLWNVATGTEHAVL----KGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDV--ATGK 618
Query: 301 PVD------ENEVEL-------------------------------NHHSGIIRDLTFVQ 369
D EN V L H+ +R + F
Sbjct: 619 ERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEALHTFEGHTDWVRAVAFSP 678
Query: 370 DNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTA 549
D L+++G+ D I + D +L GH PV+SV P L S S D T
Sbjct: 679 DGA----LLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTI 734
Query: 550 RIWDLRSQ 573
RIW + ++
Sbjct: 735 RIWPIATE 742
>sp|Q8YTC2|Y2800_ANASP Hypothetical WD-repeat protein alr2800
Length = 1258
Score = 92.8 bits (229), Expect = 1e-18
Identities = 74/290 (25%), Positives = 128/290 (44%), Gaps = 20/290 (6%)
Frame = +1
Query: 7 VAFNPYGNLYAIGSNSKTLRICQFPN---LNEIKPMKDSIY-----------------DG 126
VAF+P + A GSN KT+++ + ++ ++ D IY
Sbjct: 942 VAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSS 1001
Query: 127 VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPV 306
V +W++ S ++ H +Y + + G+IIATGS D VKL ++
Sbjct: 1002 VRLWNI----STGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNIS------T 1051
Query: 307 DENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPV 486
+ L+ HS I + + D L+++ + D + + DC T +G L GH V
Sbjct: 1052 GQCLKTLSEHSDKILGMAWSPDGQ----LLASASADQSVRLWDCCTGRCVGILRGHSNRV 1107
Query: 487 YSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLA 666
YS PN ++ + S D+T +IWD + ++ + G N + P G +LA
Sbjct: 1108 YSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLT--GHTNW---VFDIAFSPDGKILA 1162
Query: 667 SGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKI 816
S D +V ++D+ ++C H++ V SV FS + + SG D +
Sbjct: 1163 SASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTV 1212
Score = 90.5 bits (223), Expect = 6e-18
Identities = 73/277 (26%), Positives = 120/277 (43%)
Frame = +1
Query: 4 AVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKP 183
+VAF+P G A S KT+++ WD+ +
Sbjct: 731 SVAFHPDGETLASASGDKTIKL----------------------WDIQ----DGTCLQTL 764
Query: 184 KHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTF 363
H + C+A+S DG +A+ + D +KL V+ L H+G +R + F
Sbjct: 765 TGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRT------LKSHTGWVRSVAF 818
Query: 364 VQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADK 543
D +++G+GD I + + +T L + GH VYS+ P+S +LVSGS D+
Sbjct: 819 SADGQT----LASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDR 874
Query: 544 TARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPL 723
T ++WD ++ ++ + ++ C AF+ P G LA D SV L++ R L
Sbjct: 875 TIKLWDCQTHICIKTLHGHTNEVCSVAFS-----PDGQTLACVSLDQSVRLWNCRTGQCL 929
Query: 724 NLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQ 834
+++ V FS + L SG D + L D Q
Sbjct: 930 KAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQ 966
Score = 78.6 bits (192), Expect = 2e-14
Identities = 77/324 (23%), Positives = 131/324 (40%), Gaps = 20/324 (6%)
Frame = +1
Query: 1 RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSI---------YDG--------- 126
R VAF+P GN A + T+++ ++ +K DG
Sbjct: 772 RCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGD 831
Query: 127 --VEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGF 300
+++W+ H K H S+Y IA+S D +I+ +GS D+ +KL
Sbjct: 832 RTIKIWNYHTGEC----LKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICI 887
Query: 301 PVDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRG 480
L+ H+ + + F D ++ + D + + +C T L + G+
Sbjct: 888 KT------LHGHTNEVCSVAFSPDGQT----LACVSLDQSVRLWNCRTGQCLKAWYGNTD 937
Query: 481 PVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLL 660
V P+ +L SGS DKT ++WD ++ + +E G AF+ P
Sbjct: 938 WALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFS-----PDSQT 992
Query: 661 LASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHN 840
LAS DSSV L++I + H++ V +V F + +G D + L N
Sbjct: 993 LASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKL----WN 1048
Query: 841 LREPISHVTIAEHKDKVIQCRWHP 912
+ T++EH DK++ W P
Sbjct: 1049 ISTGQCLKTLSEHSDKILGMAWSP 1072
Score = 76.3 bits (186), Expect = 1e-13
Identities = 64/208 (30%), Positives = 95/208 (45%), Gaps = 1/208 (0%)
Frame = +1
Query: 196 GSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDN 375
G+I A+S +G+++AT D V++ V SG + + HS +R + F D
Sbjct: 643 GNILSAAFSPEGQLLATCDTDCHVRVWEVK--SGKLL----LICRGHSNWVRFVVFSPDG 696
Query: 376 TKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARI 555
+L S GA D + + + +LTGH V+SV P+ L S S DKT ++
Sbjct: 697 ---EILASCGA-DENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKL 752
Query: 556 WDLRSQAPVQ-IVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLC 732
WD++ +Q + H C V P G LAS D ++ L+D+ L
Sbjct: 753 WDIQDGTCLQTLTGHTDWVRC------VAFSPDGNTLASSAADHTIKLWDVSQGKCLRTL 806
Query: 733 KLHSNEVRSVRFSNNALCLLSGGYDNKI 816
K H+ VRSV FS + L SG D I
Sbjct: 807 KSHTGWVRSVAFSADGQTLASGSGDRTI 834
Score = 73.6 bits (179), Expect = 8e-13
Identities = 56/208 (26%), Positives = 96/208 (46%)
Frame = +1
Query: 211 IAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDNTKPNL 390
+A+S D +I+A+GSNDK VKL + + L H+ I + F D+
Sbjct: 942 VAFSPDRQILASGSNDKTVKLW------DWQTGKYISSLEGHTDFIYGIAFSPDSQT--- 992
Query: 391 LISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRS 570
+++ + D + + + +T L H VY+V P ++ +GSAD T ++W++ +
Sbjct: 993 -LASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNIST 1051
Query: 571 QAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSNE 750
++ + G A++ P G LLAS D SV L+D + + + HSN
Sbjct: 1052 GQCLKTLSEHSDKILGMAWS-----PDGQLLASASADQSVRLWDCCTGRCVGILRGHSNR 1106
Query: 751 VRSVRFSNNALCLLSGGYDNKIILSDLQ 834
V S FS N + + D + + D Q
Sbjct: 1107 VYSAIFSPNGEIIATCSTDQTVKIWDWQ 1134
Score = 72.8 bits (177), Expect = 1e-12
Identities = 66/241 (27%), Positives = 106/241 (43%)
Frame = +1
Query: 190 HRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQ 369
H + + +S DGEI+A+ D+ VKL V G + L H + + F
Sbjct: 683 HSNWVRFVVFSPDGEILASCGADENVKLWSVR--DGVCIKT----LTGHEHEVFSVAFHP 736
Query: 370 DNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTA 549
D +++ +GD I + D T L +LTGH V V P+ N L S +AD T
Sbjct: 737 DGET----LASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTI 792
Query: 550 RIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNL 729
++WD+ ++ ++ G SV G LASG D ++ +++ L
Sbjct: 793 KLWDVSQGKCLRTLKSHT-----GWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKT 847
Query: 730 CKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQHNLREPISHVTIAEHKDKVIQCRWH 909
H+N V S+ +S ++ L+SG D I L D Q + I T+ H ++V +
Sbjct: 848 YIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTH----ICIKTLHGHTNEVCSVAFS 903
Query: 910 P 912
P
Sbjct: 904 P 904
Score = 48.5 bits (114), Expect = 3e-05
Identities = 30/98 (30%), Positives = 49/98 (50%)
Frame = +1
Query: 619 GAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSNEVRSVRFSNNALCLLSG 798
G S P+G LLA+ D V +++++ L +C+ HSN VR V FS + L S
Sbjct: 643 GNILSAAFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASC 702
Query: 799 GYDNKIILSDLQHNLREPISHVTIAEHKDKVIQCRWHP 912
G D + L ++R+ + T+ H+ +V +HP
Sbjct: 703 GADENVKL----WSVRDGVCIKTLTGHEHEVFSVAFHP 736
>sp|P56093|TUP1_CANAL Transcriptional repressor TUP1
Length = 514
Score = 88.6 bits (218), Expect = 2e-17
Identities = 79/252 (31%), Positives = 117/252 (46%), Gaps = 17/252 (6%)
Frame = +1
Query: 190 HRGSIYCIAWSLDGEIIATGSNDKIVKLLRVNP------LSGFPVDENEVELNHHSG--I 345
H + C+ +S DG+ IATG N K ++ V L +EN+ + SG
Sbjct: 201 HSSVVCCVRFSRDGKFIATGCN-KTTQVFNVTTGELVAKLIDESSNENKDDNTTASGDLY 259
Query: 346 IRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLV 525
IR + F D L++ GA D I + D +T ++ L GH +YS+ P+ + LV
Sbjct: 260 IRSVCFSPDGK----LLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRLV 315
Query: 526 SGSADKTARIWDLR-SQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYD 702
SGS D++ RIWDLR SQ + + G +V P G L+A+G D +V ++D
Sbjct: 316 SGSGDRSVRIWDLRTSQCSLTLSIEDG-------VTTVAVSPDGKLIAAGSLDRTVRVWD 368
Query: 703 I-------RGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQ-HNLREPIS 858
R S H + V SV FSNN + SG D + L L+ + ++
Sbjct: 369 STTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQIASGSLDRTVKLWHLEGKSDKKSTC 428
Query: 859 HVTIAEHKDKVI 894
VT HKD V+
Sbjct: 429 EVTYIGHKDFVL 440
Score = 73.6 bits (179), Expect = 8e-13
Identities = 72/269 (26%), Positives = 111/269 (41%), Gaps = 9/269 (3%)
Frame = +1
Query: 1 RAVAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKK 180
R+V F+P G L A G+ K +RI WD+ S + K
Sbjct: 261 RSVCFSPDGKLLATGAEDKLIRI----------------------WDL----STKRIIKI 294
Query: 181 PKHHRGSIYCIAWSLDGEIIATGSNDKIVKL--LRVNPLSGFPVDENEVELNHHSGIIRD 354
+ H IY + + DG+ + +GS D+ V++ LR + S + L+ G+
Sbjct: 295 LRGHEQDIYSLDFFPDGDRLVSGSGDRSVRIWDLRTSQCS--------LTLSIEDGVTT- 345
Query: 355 LTFVQDNTKPNLLISAGAGDCKIFVTDCNTNTVLGSL-------TGHRGPVYSVYSIPNS 513
V + K LI+AG+ D + V D T ++ L GH VYSV N
Sbjct: 346 -VAVSPDGK---LIAAGSLDRTVRVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNG 401
Query: 514 NLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVS 693
+ SGS D+T ++W L ++ + SVC P + SG +D V
Sbjct: 402 EQIASGSLDRTVKLWHLEGKSDKKSTCEVTYIGHKDFVLSVCCTPDNEYILSGSKDRGVI 461
Query: 694 LYDIRGASPLNLCKLHSNEVRSVRFSNNA 780
+D +PL + + H N V SV S N+
Sbjct: 462 FWDQASGNPLLMLQGHRNSVISVAVSLNS 490
>sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1
Length = 604
Score = 81.6 bits (200), Expect = 3e-15
Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 3/251 (1%)
Frame = +1
Query: 88 NEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLDGEIIATGSNDKIV 267
N IK MKD D +++ +P +V H + C+ +S+DG+ +ATG N +
Sbjct: 265 NHIKKMKD---DWWVIFNAAVPRVLDVELVHTLQHESVVCCVRFSMDGKYVATGCN-RSA 320
Query: 268 KLLRVNPLSGFPVDENE-VELNHHSGIIRDLTFVQDNTKPNLLISAGAGDCKIFVTDCNT 444
++ V + ++E ++L IR + F D ++ GA D I V D +
Sbjct: 321 QIYDVETGEKLCILQDENIDLTGDL-YIRSVCFSPDGK----YLATGAEDKLIRVWDIQS 375
Query: 445 NTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGA 624
T+ + GH +YS+ + + SGS D+T R+WD+ + ++ +
Sbjct: 376 RTIRNTFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVL------SIEDG 429
Query: 625 FASVCTDPKGLLLASGHEDSSVSLYDIRG--ASPLNLCKLHSNEVRSVRFSNNALCLLSG 798
+V P +A+G D SV ++D+RG A L H + V SV FS + L+SG
Sbjct: 430 VTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSPDGRNLVSG 489
Query: 799 GYDNKIILSDL 831
D I + +L
Sbjct: 490 SLDKTIKMWEL 500
Score = 50.1 bits (118), Expect = 9e-06
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Frame = +1
Query: 523 VSGSADKTARIWDLRSQAPVQIVEHFGSDNCGGAFA-SVCTDPKGLLLASGHEDSSVSLY 699
V+ +++A+I+D+ + + I++ D G + SVC P G LA+G ED + ++
Sbjct: 312 VATGCNRSAQIYDVETGEKLCILQDENIDLTGDLYIRSVCFSPDGKYLATGAEDKLIRVW 371
Query: 700 DIRGASPLNLCKLHSNEVRSVRFSNNALCLLSGGYDNKIILSDLQ 834
DI+ + N H ++ S+ FS + + SG D + L D++
Sbjct: 372 DIQSRTIRNTFHGHEQDIYSLDFSRDGRTIASGSGDRTVRLWDIE 416
Score = 48.9 bits (115), Expect = 2e-05
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 13/185 (7%)
Frame = +1
Query: 43 GSNSKTLRICQFPNLNEIKPMKDSIYDG-----VEVWDVHIPSSPNVVYKKPKHHRGSIY 207
G N+ L I I P K + G V VWD+ + + + P H+ S+Y
Sbjct: 418 GQNTSVLSIEDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERL--EGPDGHKDSVY 475
Query: 208 CIAWSLDGEIIATGSNDKIVKLLRVNPLSGFPVD---ENEVELNHHSGIIRDLTFVQDNT 378
+A+S DG + +GS DK +K+ ++ G P + + G RD T
Sbjct: 476 SVAFSPDGRNLVSGSLDKTIKMWELSAPRGIPSSAPPKGGRCIKTFEG-HRDFVLSVALT 534
Query: 379 KPNLLISAGAGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIP-----NSNLLVSGSADK 543
+ + +G+ D + D T L GH+ V SV P +GS D
Sbjct: 535 PDSQWVLSGSKDRGVQFWDPRTGHTQLMLQGHKNSVISVAPSPVTGPNGVGYFATGSGDM 594
Query: 544 TARIW 558
ARIW
Sbjct: 595 RARIW 599
>sp|Q9UKB1|FBW1B_HUMAN F-box/WD-repeat protein 11 (F-box/WD-repeat protein 1B) (F-box and
WD-repeats protein beta-TrCP2)
Length = 542
Score = 80.9 bits (198), Expect = 5e-15
Identities = 83/294 (28%), Positives = 132/294 (44%), Gaps = 8/294 (2%)
Frame = +1
Query: 49 NSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSLD 228
NSK + Q+ + I ++D+ +++WD + K H GS+ C+ + D
Sbjct: 239 NSKGVYCLQYDDEKIISGLRDN---SIKIWD----KTSLECLKVLTGHTGSVLCLQY--D 289
Query: 229 GEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDNTKPNLLISAGA 408
+I TGS+D V++ VN E L HH+ + L F N L+ +
Sbjct: 290 ERVIVTGSSDSTVRVWDVN------TGEVLNTLIHHNEAVLHLRF------SNGLMVTCS 337
Query: 409 GDCKIFVTDCNTNTVLGS---LTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRSQAP 579
D I V D + T + L GHR V V + +VS S D+T ++W S +
Sbjct: 338 KDRSIAVWDMASATDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW---STST 392
Query: 580 VQIVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLNLCKLHSNEVRS 759
+ V G A C + L+ SG D+++ L+DI + L + + H VR
Sbjct: 393 CEFVRTLNGHKRGIA----CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC 448
Query: 760 VRFSNNALCLLSGGYDNKIILSDLQHNL--REPISHV---TIAEHKDKVIQCRW 906
+RF N ++SG YD KI + DLQ L R P S + T+ EH +V + ++
Sbjct: 449 IRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF 500
>sp|O15736|TIPD_DICDI Protein tipD
Length = 612
Score = 79.7 bits (195), Expect = 1e-14
Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 2/265 (0%)
Frame = +1
Query: 46 SNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPKHHRGSIYCIAWSL 225
S S + + + P+ N++ P+ + GV + +PS K+ H IYC+A++
Sbjct: 279 SESISNLVVKLPDANDV-PIPIVLERGVFSSEAMLPSKAK---KRWTGHNSEIYCMAFNS 334
Query: 226 DGEIIATGSNDKIVKLLRVNPLSGFPVDENEVELNHHSGIIRDLTFVQDNTKPNLLISAG 405
G ++ATG DK VK+ V +SG + + L S I ++F ++ ++L ++
Sbjct: 335 IGNLLATGGGDKCVKVWDV--ISG----QQKSTLLGASQSIVSVSFSPND--ESILGTSN 386
Query: 406 AGDCKIFVTDCNTNTVLGSLTGHRGPVYSVYSIPNSNLLVSGSADKTARIWDLRSQAPVQ 585
+++ T+ + +LTGH G VY+ I NSN +V+GS D+T ++WDL+ +
Sbjct: 387 DNSARLWNTELGRSR--HTLTGHIGKVYTGKFI-NSNRVVTGSHDRTIKLWDLQKGYCTR 443
Query: 586 IVEHFGSDNCGGAFASVCTDPKGLLLASGHEDSSVSLYDIRGASPLN-LCKLHSNEVRSV 762
+ F S N V G LASGH D SV +D P L +H ++ S+
Sbjct: 444 TIFCFSSCN-----DLVILGGSGTHLASGHVDHSVRFWDSNAGEPTQVLSSIHEGQITSI 498
Query: 763 RFS-NNALCLLSGGYDNKIILSDLQ 834
S N +L+ D+ + + D++
Sbjct: 499 TNSPTNTNQILTNSRDHTLKIIDIR 523
Score = 44.3 bits (103), Expect = 5e-04
Identities = 75/309 (24%), Positives = 119/309 (38%), Gaps = 38/309 (12%)
Frame = +1
Query: 7 VAFNPYGNLYAIGSNSKTLRICQFPNLNEIKPMKDSIYDGVEVWDVHIPSSPNVVYKKPK 186
+AFN GNL A G K V+VWDV + + +
Sbjct: 330 MAFNSIGNLLATGGGDKC----------------------VKVWDVISGQQKSTLLGASQ 367
Query: 187 HHRGSIYCIAWSLDGEIIATGSNDKIVKLLRV--------------NPLSGFPVDENEVE 324
SI +++S + E I SND +L +G ++ N V
Sbjct: 368 ----SIVSVSFSPNDESILGTSNDNSARLWNTELGRSRHTLTGHIGKVYTGKFINSNRVV 423
Query: 325 LNHHSGIIR--DL-------TFVQDNTKPNLLISAGAG--------DCKIFVTDCNT--- 444
H I+ DL T ++ +L+I G+G D + D N
Sbjct: 424 TGSHDRTIKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGEP 483
Query: 445 NTVLGSLTGHRGPVYSVYSIP-NSNLLVSGSADKTARIWDLRSQAPVQIVEHFGSDNCGG 621
VL S+ H G + S+ + P N+N +++ S D T +I D+R+ ++ + N G
Sbjct: 484 TQVLSSI--HEGQITSITNSPTNTNQILTNSRDHTLKIIDIRTFDTIRTFKDPEYRN-GL 540
Query: 622 AFASVCTDPKGLLLASGHEDSSVSLYD-IRGASPLNLCKLHSN--EVRSVRFSNNALCLL 792
+ P G +ASG D S+ ++D G + L K+H+N V +S A +
Sbjct: 541 NWTKASWSPDGRYIASGSIDGSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPLANIFI 600
Query: 793 SGGYDNKII 819
S D II
Sbjct: 601 SADKDKNII 609
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,370,586
Number of Sequences: 369166
Number of extensions: 2489784
Number of successful extensions: 8997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7873
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)