Planaria EST Database


DrC_01573

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01573
         (957 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TQH0|ATX2L_MOUSE  Ataxin-2-like protein                       34   0.69 
sp|O83269|RPOB_TREPA  DNA-directed RNA polymerase beta chain...    33   1.2  
sp|P35884|TRA2_THIFE  Transposase for insertion sequence ele...    33   1.5  
sp|Q871U2|ATG7_NEUCR  Autophagy-related protein 7 (Autophagy...    32   3.4  
sp|P15392|CP2A4_MOUSE  Cytochrome P450 2A4 (CYPIIA4) (Testos...    31   4.5  
sp|P20852|CP2A5_MOUSE  Cytochrome P450 2A5 (CYPIIA5) (Coumar...    31   5.9  
sp|P11837|NIMA_EMENI  G2-specific protein kinase nimA (Never...    31   5.9  
sp|P41817|CUP9_YEAST  Homeobox protein CUP9                        31   5.9  
sp|Q8WXX7|AUTS2_HUMAN  Autism susceptibility gene 2 protein        31   5.9  
sp|Q02447|SP3_HUMAN  Transcription factor Sp3 (SPR-2)              31   5.9  
>sp|Q7TQH0|ATX2L_MOUSE Ataxin-2-like protein
          Length = 1049

 Score = 33.9 bits (76), Expect = 0.69
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
 Frame = +3

Query: 519  SPQPVKMIPRMGYPGGDAHMIGREVMYDTPPSGHDPRIMVAPPGMVLVQPGMSHH----- 683
            +PQ +       YP     + G +    T P+G  P+   A P  V  Q G + H     
Sbjct: 853  TPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQ 912

Query: 684  -DQNWVHLNNTLTRRGTPTLFVEPPRIRD--------YSEYGIPPNQMVPIQPQQLAHLS 836
              QN  H    LT  GTP      P  +          + Y I P+Q +P     +AH++
Sbjct: 913  PQQNLYH-PGALT--GTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPHGFTNMAHVT 969

Query: 837  QQNL 848
            Q ++
Sbjct: 970  QAHV 973
>sp|O83269|RPOB_TREPA DNA-directed RNA polymerase beta chain (RNAP beta subunit)
           (Transcriptase beta chain) (RNA polymerase beta subunit)
          Length = 1178

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +3

Query: 666 PGMSHHDQNWVHLNNTLTRRGTPTLFVEPPRIRDYSEYGIPPNQMVPIQPQQ---LAHLS 836
           P + H D N   + + + R+G P +F EPPR+    E     +  V ++ +Q   +A++S
Sbjct: 640 PFLEHDDANRALMGSNMQRQGVPLIFPEPPRVGTGMEEKCAYDSGVLVKAKQDGTVAYVS 699

Query: 837 QQNLHLHNQNLSG 875
            + + + +   SG
Sbjct: 700 SEKIVVCSAAASG 712
>sp|P35884|TRA2_THIFE Transposase for insertion sequence element IST2
          Length = 296

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
 Frame = +3

Query: 576 MIGREVMYDTPPSGHDPRIMV---------APPGMVLVQPGMSHHDQNWVHLNNTLTRRG 728
           ++GR  +Y+ PP G DPRI +             +V+V  G+     +W+ +   L  RG
Sbjct: 47  LVGRRYLYE-PPCGEDPRICLLVIIGVTAEGKKELVMVSDGLRESKASWLEILRDLQARG 105

Query: 729 TPT 737
             T
Sbjct: 106 LET 108
>sp|Q871U2|ATG7_NEUCR Autophagy-related protein 7 (Autophagy-related E1-like-activating
           enzyme atg-7)
          Length = 699

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 20/66 (30%), Positives = 22/66 (33%)
 Frame = +3

Query: 33  APGPASLPTGSLLRQNTNQMHHPAQYCPPQYAPIPQQMYYTGGNGFVYPQCSYMVSPXXX 212
           AP P S  TGS +    +   HP    P Q              G  YPQCS    P   
Sbjct: 581 APAPVSTGTGSAVSYERDPPDHPLGLVPHQVRGFLSNFQNMVIRGKSYPQCSACSKPILD 640

Query: 213 XXXTGG 230
               GG
Sbjct: 641 AYKEGG 646
>sp|P15392|CP2A4_MOUSE Cytochrome P450 2A4 (CYPIIA4) (Testosterone 15-alpha-hydroxylase)
           (P450-15-alpha) (P450-IIA3.1)
          Length = 494

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  KIAPGPASLP-TGSLLRQNTNQMHHPAQYCPPQYAPI 134
           K+ PGP  LP  G+ L+ NT QM++       +Y P+
Sbjct: 32  KLPPGPTPLPFVGNFLQLNTEQMYNSLMKISQRYGPV 68
>sp|P20852|CP2A5_MOUSE Cytochrome P450 2A5 (CYPIIA5) (Coumarin 7-hydroxylase)
           (P450-15-COH) (P450-IIA3.2)
          Length = 494

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  KIAPGPASLP-TGSLLRQNTNQMHHPAQYCPPQYAPI 134
           K+ PGP  LP  G+ L+ NT QM++       +Y P+
Sbjct: 32  KLPPGPTPLPFIGNFLQLNTEQMYNSLMKISQRYGPV 68
>sp|P11837|NIMA_EMENI G2-specific protein kinase nimA (Never in mitosis)
          Length = 699

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 9   PAVTYYKIAPGPASLPTGSLLRQNTNQMHHPAQYCPPQYAPIPQQM 146
           P+ T  K+ P P   P+  LLRQNT  +       PP +   P ++
Sbjct: 520 PSPTRPKVKPDPFKAPSRPLLRQNTTALMQKLSTQPPIFPANPSRL 565
>sp|P41817|CUP9_YEAST Homeobox protein CUP9
          Length = 306

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = +3

Query: 69  LRQNTNQMHHPAQYCPPQYAPIPQQMYYTGGNGFVYPQCSYMVSPXXXXXXTGGSGSHA- 245
           LR +T + ++PA    PQ+  I      +GG        S   +P      T  + S A 
Sbjct: 51  LRSSTEEQNYPAPVLLPQHHSIAYPAINSGGT-------STTATPTASTVETSKTSSSAM 103

Query: 246 TISNQGGSGQQMKQEFNDMRSQDGGESVYSYFSQTSNAGVPRHDLVHGTVEAGSQTINSN 425
              +Q GS ++ K   +D +       +Y   ++  +AG   +      VE+ S+   ++
Sbjct: 104 DTQSQYGSSKKSKSASDDAKPCYKSAPIYEIINKEKDAGAQYNRPFSDFVESKSRRKQNS 163

Query: 426 GTGS 437
           G  S
Sbjct: 164 GRRS 167
>sp|Q8WXX7|AUTS2_HUMAN Autism susceptibility gene 2 protein
          Length = 1259

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
 Frame = +3

Query: 6   PPAVTYYKIA-PGPASLPTGSLLRQNTNQM------HHPAQYCPPQYAPIPQQMYYTGGN 164
           PP ++++  A P P SLP  S L   T  +      HHP  + PP   P P  +  T G+
Sbjct: 419 PPHISHHPSASPFPLSLPNHSPLHSFTPTLQPPAHSHHPNMFAPPTALPPPPPL--TSGS 476

Query: 165 GFVYPQCSYMVSPXXXXXXTGGSGSHATISNQGGSGQQMKQEFNDMRSQDGGESV 329
                                G  + +T S Q    Q++   F   +S D G S+
Sbjct: 477 -----------------LQVAGHPAGSTYSEQDILRQELNTRFLASQSADRGASL 514
>sp|Q02447|SP3_HUMAN Transcription factor Sp3 (SPR-2)
          Length = 781

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 22/104 (21%), Positives = 41/104 (39%)
 Frame = +3

Query: 252 SNQGGSGQQMKQEFNDMRSQDGGESVYSYFSQTSNAGVPRHDLVHGTVEAGSQTINSNGT 431
           S+ G       Q    ++S DG +    +   + N G+ +       +   +QT+ ++GT
Sbjct: 160 SSNGTVSSVQYQVIPQIQSADGQQVQIGFTGSSDNGGINQESSQIQIIPGSNQTLLASGT 219

Query: 432 GSASXXXXXXXXXXTNHSGITLSENSDNCSPQPVKMIPRMGYPG 563
            SA+              G+ +  +S     Q V  +P +G PG
Sbjct: 220 PSANIQNLIPQTGQVQVQGVAIGGSSFPGQTQVVANVP-LGLPG 262
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,480,140
Number of Sequences: 369166
Number of extensions: 2777537
Number of successful extensions: 8140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8120
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9904824765
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)