Planaria EST Database


DrC_01569

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01569
         (659 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NTK5|PTD4_HUMAN  Putative GTP-binding protein PTD004         255   6e-68
sp|Q9CZ30|PTD4_MOUSE  Putative GTP-binding protein PTD004 ho...   254   1e-67
sp|P91917|YCHF_CAEEL  Putative GTP-binding protein W08E3.3        233   4e-61
sp|P38219|YBN5_YEAST  Putative GTP-binding protein YBR025C        188   9e-48
sp|O14078|YEAD_SCHPO  Hypothetical GTP-binding protein UNK4....   151   2e-36
sp|Q9CP90|ENGD_PASMU  GTP-dependent nucleic acid-binding pro...   134   3e-31
sp|P44681|ENGD_HAEIN  GTP-dependent nucleic acid-binding pro...   129   7e-30
sp|P37518|ENGD_BACSU  GTP-dependent nucleic acid-binding pro...   124   2e-28
sp|P0ABU4|ENGD_SHIFL  GTP-dependent nucleic acid-binding pro...   124   3e-28
sp|Q7VMI2|ENGD_HAEDU  GTP-dependent nucleic acid-binding pro...   122   8e-28
>sp|Q9NTK5|PTD4_HUMAN Putative GTP-binding protein PTD004
          Length = 396

 Score =  255 bits (652), Expect = 6e-68
 Identities = 117/199 (58%), Positives = 154/199 (77%), Gaps = 1/199 (0%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PFCTIDP ESR P PD+RF++LC+YH P +++PA+L+VVDIAGLVKGA    GL +AFLS
Sbjct: 53  PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLS 112

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           HI+  D IFH+TR FE +D+ HVEG V+P+RD++II EEL+L+D+E I   +DK+E    
Sbjct: 113 HISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAV 172

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVR-SGDWIPTDIEVLNRHLFITAKPCIYLINMS 538
           RGGDK L+PE D M KV+  V + K+PVR   DW   +IEVLN+HLF+T+KP +YL+N+S
Sbjct: 173 RGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLS 232

Query: 539 ETGYVQQKNKWLSKIKSWV 595
           E  Y+++KNKWL KIK WV
Sbjct: 233 EKDYIRKKNKWLIKIKEWV 251
>sp|Q9CZ30|PTD4_MOUSE Putative GTP-binding protein PTD004 homolog
          Length = 396

 Score =  254 bits (650), Expect = 1e-67
 Identities = 117/199 (58%), Positives = 154/199 (77%), Gaps = 1/199 (0%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PFCTIDP ESR P PD+RF++LC+YH P +++PA+L+VVDIAGLVKGA    GL +AFLS
Sbjct: 53  PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLS 112

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           HI+  D IFH+TR FE +D+ HVEG V+P+RD++II EEL+L+D+E I   +DK+E    
Sbjct: 113 HISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPILDKLEKVAV 172

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVR-SGDWIPTDIEVLNRHLFITAKPCIYLINMS 538
           RGGDK L+PE D M KV+  V + K+PVR   DW   +IEVLN+HLF+T+KP +YL+N+S
Sbjct: 173 RGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLS 232

Query: 539 ETGYVQQKNKWLSKIKSWV 595
           E  Y+++KNKWL KIK WV
Sbjct: 233 EKDYIRKKNKWLIKIKEWV 251
>sp|P91917|YCHF_CAEEL Putative GTP-binding protein W08E3.3
          Length = 395

 Score =  233 bits (593), Expect = 4e-61
 Identities = 106/198 (53%), Positives = 150/198 (75%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PFCTIDP ESR    DDRF+WL  ++ P ++VPA+L+V DIAGLVKGA E  GL +AFLS
Sbjct: 52  PFCTIDPNESRVAVQDDRFDWLVNHYKPASKVPAFLNVTDIAGLVKGASEGQGLGNAFLS 111

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           H++  DA+FH+ R F+ +DV HVEG+V+PVRDL+II+ EL  +D ++I   +DK+E  + 
Sbjct: 112 HVSACDALFHLCRAFDDDDVTHVEGEVDPVRDLEIISNELFAKDLQFIDGPLDKVEKLFT 171

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
           R  DK  + E DT+++V+K + E+K+PVR   W   +IE+LN+HLF+TAKP +YL+N+SE
Sbjct: 172 RANDKTKKIEYDTLVRVKKCL-EEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSE 230

Query: 542 TGYVQQKNKWLSKIKSWV 595
             Y+++KNKWL KIK+W+
Sbjct: 231 KDYIRKKNKWLPKIKAWI 248
>sp|P38219|YBN5_YEAST Putative GTP-binding protein YBR025C
          Length = 394

 Score =  188 bits (478), Expect = 9e-48
 Identities = 98/203 (48%), Positives = 134/203 (66%), Gaps = 5/203 (2%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCE-YHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFL 178
           PF TIDP E+R   P  RF+ LCE Y    + VPA+L+V DIAGL KGA    GL +AFL
Sbjct: 52  PFATIDPEEARVIVPSPRFDKLCEIYKKTASEVPAHLTVYDIAGLTKGASAGEGLGNAFL 111

Query: 179 SHINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAY 358
           SHI  VD+I+ + R F+  ++IHVEGDV+PVRDL+II +ELRL+D E+  K ++  E   
Sbjct: 112 SHIRSVDSIYQVVRCFDDAEIIHVEGDVDPVRDLEIINQELRLKDIEFAQKALEGAEKIA 171

Query: 359 FRGGD----KNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYL 526
            RGG     K  + E+D + K+ KL+ E  + V +  W   ++E++N    +TAKPCIYL
Sbjct: 172 KRGGQSLEVKQKKEEMDLITKIIKLL-ESGQRVANHSWTSKEVEIINSMFLLTAKPCIYL 230

Query: 527 INMSETGYVQQKNKWLSKIKSWV 595
           IN+SE  Y+++KNK L +IK WV
Sbjct: 231 INLSERDYIRKKNKHLLRIKEWV 253
>sp|O14078|YEAD_SCHPO Hypothetical GTP-binding protein UNK4.13c in chromosome I
          Length = 407

 Score =  151 bits (381), Expect = 2e-36
 Identities = 79/198 (39%), Positives = 113/198 (57%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PF TIDP  ++AP  D ++E LCE + P TR+PA L++ D AGL + + +  GL +AFLS
Sbjct: 77  PFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDTAGLTRNSSKGEGLGNAFLS 136

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           +I  VDA+F + R F    V HVE  V+PVRDL II EEL L+D E++   + K   +  
Sbjct: 137 NIRSVDALFQLVRAFPEAQVPHVEKSVDPVRDLQIIQEELLLKDAEFLESYLKKEGRS-- 194

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
               K     LDT  +  ++V    R +   +W    I +LN    +TAKP +YL+NM +
Sbjct: 195 ---PKTCAKALDTARRALEVVLGKGRQISKAEWNDEQIPILNSLNLLTAKPVVYLVNMDQ 251

Query: 542 TGYVQQKNKWLSKIKSWV 595
             Y+  + + L  IK WV
Sbjct: 252 DDYLSDEQEALKGIKEWV 269
>sp|Q9CP90|ENGD_PASMU GTP-dependent nucleic acid-binding protein engD
          Length = 363

 Score =  134 bits (336), Expect = 3e-31
 Identities = 71/195 (36%), Positives = 114/195 (58%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PFCTI+P     P PD R + L E   P   +P  +  VDIAGLV GA +  GL + FL+
Sbjct: 33  PFCTIEPNTGVVPMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLA 92

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           +I   DAI H+ R FE++D++HV G +NP  D+D I  EL L D +   + + +++    
Sbjct: 93  NIRETDAIGHVVRCFENDDIVHVAGQINPAEDIDTINTELALADLDSCERAIQRLQKR-A 151

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
           +GGDK+ + EL  M K+   V E+   +RS D    +++ +  + F+T KP +Y+ N++E
Sbjct: 152 KGGDKDAKFELSIMEKILP-VLENAGMIRSIDLDKDELQAIKGYNFLTLKPTMYIANVNE 210

Query: 542 TGYVQQKNKWLSKIK 586
            G+  + N +L +++
Sbjct: 211 DGF--ENNPYLDRVR 223
>sp|P44681|ENGD_HAEIN GTP-dependent nucleic acid-binding protein engD
          Length = 363

 Score =  129 bits (324), Expect = 7e-30
 Identities = 69/195 (35%), Positives = 113/195 (57%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PFCTI+P     P PD R + L E   P   +P  +  VDIAGLV GA +  GL + FL+
Sbjct: 33  PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLA 92

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           +I   DAI H+ R FE++D++HV G ++P+ D+D I  EL L D +   + + +++    
Sbjct: 93  NIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKR-A 151

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
           +GGDK  + EL  M K+   V E+   +RS      +++ +  + F+T KP +Y+ N++E
Sbjct: 152 KGGDKEAKFELSVMEKILP-VLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNE 210

Query: 542 TGYVQQKNKWLSKIK 586
            G+  + N +L +++
Sbjct: 211 DGF--ENNPYLDRVR 223
>sp|P37518|ENGD_BACSU GTP-dependent nucleic acid-binding protein engD
          Length = 366

 Score =  124 bits (311), Expect = 2e-28
 Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 1/198 (0%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PFCTIDP       PDDR + L E  NP   VP      DIAG+VKGA +  GL + FLS
Sbjct: 33  PFCTIDPNVGIVEVPDDRLQKLTELVNPKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLS 92

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           HI  VDAI H+ R F  +++ HV G V+P+ D++ I  EL L D E + K + ++ +   
Sbjct: 93  HIRQVDAICHVVRAFSDDNITHVSGKVDPIDDIETINLELILADMETVEKRITRV-SKLA 151

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
           +  DK+   E + + K+++   E ++P RS ++     +++ +   +T+KP +Y+ N+SE
Sbjct: 152 KQKDKDAVFEFEILSKLKE-AFESEKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSE 210

Query: 542 TGYVQQK-NKWLSKIKSW 592
                   N+ ++KI+ +
Sbjct: 211 DEVADPSGNENVAKIREY 228
>sp|P0ABU4|ENGD_SHIFL GTP-dependent nucleic acid-binding protein engD
 sp|P0ABU2|ENGD_ECOLI GTP-dependent nucleic acid-binding protein engD
 sp|P0ABU3|ENGD_ECO57 GTP-dependent nucleic acid-binding protein engD
          Length = 363

 Score =  124 bits (310), Expect = 3e-28
 Identities = 68/195 (34%), Positives = 112/195 (57%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PFCTI+P     P PD R + L E   P   +P  +  VDIAGLVKGA +  GL + FL+
Sbjct: 33  PFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLT 92

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           +I   +AI H+ R FE++++IHV G VNP  D+++I  EL L D +   + + +++    
Sbjct: 93  NIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKK-A 151

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
           +GGDK+ + EL  + K    + E+   +R+ D    +   +    F+T KP +Y+ N++E
Sbjct: 152 KGGDKDAKAELAVLEKCLPQL-ENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNE 210

Query: 542 TGYVQQKNKWLSKIK 586
            G+  + N +L +++
Sbjct: 211 DGF--ENNPYLDQVR 223
>sp|Q7VMI2|ENGD_HAEDU GTP-dependent nucleic acid-binding protein engD
          Length = 363

 Score =  122 bits (306), Expect = 8e-28
 Identities = 66/195 (33%), Positives = 111/195 (56%)
 Frame = +2

Query: 2   PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
           PFCTI+P     P PD R + L E  NP   +P  +  VDIAGLV GA +  GL + FL+
Sbjct: 33  PFCTIEPNTGVVPMPDPRLDALAEIVNPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLA 92

Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
           +I   DAI H+ R FE++D++HV G ++P  D++ I  EL L D +   + + +++    
Sbjct: 93  NIRETDAIGHVVRCFENDDIVHVAGKIDPADDIETINTELALADLDSCERAIQRLQKR-A 151

Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
           + GDK+ + EL  + K+   V E+   +RS      ++  +  + F+T KP +Y+ N++E
Sbjct: 152 KSGDKDAKFELSILEKILP-VLENAGMIRSVALDKDELHAIKGYNFLTLKPTMYIANVNE 210

Query: 542 TGYVQQKNKWLSKIK 586
             +  + N +L +++
Sbjct: 211 DSF--ENNPYLDRVR 223
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,063,123
Number of Sequences: 369166
Number of extensions: 1609158
Number of successful extensions: 4735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4720
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)