Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01569 (659 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9NTK5|PTD4_HUMAN Putative GTP-binding protein PTD004 255 6e-68 sp|Q9CZ30|PTD4_MOUSE Putative GTP-binding protein PTD004 ho... 254 1e-67 sp|P91917|YCHF_CAEEL Putative GTP-binding protein W08E3.3 233 4e-61 sp|P38219|YBN5_YEAST Putative GTP-binding protein YBR025C 188 9e-48 sp|O14078|YEAD_SCHPO Hypothetical GTP-binding protein UNK4.... 151 2e-36 sp|Q9CP90|ENGD_PASMU GTP-dependent nucleic acid-binding pro... 134 3e-31 sp|P44681|ENGD_HAEIN GTP-dependent nucleic acid-binding pro... 129 7e-30 sp|P37518|ENGD_BACSU GTP-dependent nucleic acid-binding pro... 124 2e-28 sp|P0ABU4|ENGD_SHIFL GTP-dependent nucleic acid-binding pro... 124 3e-28 sp|Q7VMI2|ENGD_HAEDU GTP-dependent nucleic acid-binding pro... 122 8e-28
>sp|Q9NTK5|PTD4_HUMAN Putative GTP-binding protein PTD004 Length = 396 Score = 255 bits (652), Expect = 6e-68 Identities = 117/199 (58%), Positives = 154/199 (77%), Gaps = 1/199 (0%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PFCTIDP ESR P PD+RF++LC+YH P +++PA+L+VVDIAGLVKGA GL +AFLS Sbjct: 53 PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLS 112 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 HI+ D IFH+TR FE +D+ HVEG V+P+RD++II EEL+L+D+E I +DK+E Sbjct: 113 HISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAV 172 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVR-SGDWIPTDIEVLNRHLFITAKPCIYLINMS 538 RGGDK L+PE D M KV+ V + K+PVR DW +IEVLN+HLF+T+KP +YL+N+S Sbjct: 173 RGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLS 232 Query: 539 ETGYVQQKNKWLSKIKSWV 595 E Y+++KNKWL KIK WV Sbjct: 233 EKDYIRKKNKWLIKIKEWV 251
>sp|Q9CZ30|PTD4_MOUSE Putative GTP-binding protein PTD004 homolog Length = 396 Score = 254 bits (650), Expect = 1e-67 Identities = 117/199 (58%), Positives = 154/199 (77%), Gaps = 1/199 (0%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PFCTIDP ESR P PD+RF++LC+YH P +++PA+L+VVDIAGLVKGA GL +AFLS Sbjct: 53 PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLS 112 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 HI+ D IFH+TR FE +D+ HVEG V+P+RD++II EEL+L+D+E I +DK+E Sbjct: 113 HISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPILDKLEKVAV 172 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVR-SGDWIPTDIEVLNRHLFITAKPCIYLINMS 538 RGGDK L+PE D M KV+ V + K+PVR DW +IEVLN+HLF+T+KP +YL+N+S Sbjct: 173 RGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLS 232 Query: 539 ETGYVQQKNKWLSKIKSWV 595 E Y+++KNKWL KIK WV Sbjct: 233 EKDYIRKKNKWLIKIKEWV 251
>sp|P91917|YCHF_CAEEL Putative GTP-binding protein W08E3.3 Length = 395 Score = 233 bits (593), Expect = 4e-61 Identities = 106/198 (53%), Positives = 150/198 (75%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PFCTIDP ESR DDRF+WL ++ P ++VPA+L+V DIAGLVKGA E GL +AFLS Sbjct: 52 PFCTIDPNESRVAVQDDRFDWLVNHYKPASKVPAFLNVTDIAGLVKGASEGQGLGNAFLS 111 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 H++ DA+FH+ R F+ +DV HVEG+V+PVRDL+II+ EL +D ++I +DK+E + Sbjct: 112 HVSACDALFHLCRAFDDDDVTHVEGEVDPVRDLEIISNELFAKDLQFIDGPLDKVEKLFT 171 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541 R DK + E DT+++V+K + E+K+PVR W +IE+LN+HLF+TAKP +YL+N+SE Sbjct: 172 RANDKTKKIEYDTLVRVKKCL-EEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSE 230 Query: 542 TGYVQQKNKWLSKIKSWV 595 Y+++KNKWL KIK+W+ Sbjct: 231 KDYIRKKNKWLPKIKAWI 248
>sp|P38219|YBN5_YEAST Putative GTP-binding protein YBR025C Length = 394 Score = 188 bits (478), Expect = 9e-48 Identities = 98/203 (48%), Positives = 134/203 (66%), Gaps = 5/203 (2%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCE-YHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFL 178 PF TIDP E+R P RF+ LCE Y + VPA+L+V DIAGL KGA GL +AFL Sbjct: 52 PFATIDPEEARVIVPSPRFDKLCEIYKKTASEVPAHLTVYDIAGLTKGASAGEGLGNAFL 111 Query: 179 SHINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAY 358 SHI VD+I+ + R F+ ++IHVEGDV+PVRDL+II +ELRL+D E+ K ++ E Sbjct: 112 SHIRSVDSIYQVVRCFDDAEIIHVEGDVDPVRDLEIINQELRLKDIEFAQKALEGAEKIA 171 Query: 359 FRGGD----KNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYL 526 RGG K + E+D + K+ KL+ E + V + W ++E++N +TAKPCIYL Sbjct: 172 KRGGQSLEVKQKKEEMDLITKIIKLL-ESGQRVANHSWTSKEVEIINSMFLLTAKPCIYL 230 Query: 527 INMSETGYVQQKNKWLSKIKSWV 595 IN+SE Y+++KNK L +IK WV Sbjct: 231 INLSERDYIRKKNKHLLRIKEWV 253
>sp|O14078|YEAD_SCHPO Hypothetical GTP-binding protein UNK4.13c in chromosome I Length = 407 Score = 151 bits (381), Expect = 2e-36 Identities = 79/198 (39%), Positives = 113/198 (57%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PF TIDP ++AP D ++E LCE + P TR+PA L++ D AGL + + + GL +AFLS Sbjct: 77 PFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDTAGLTRNSSKGEGLGNAFLS 136 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 +I VDA+F + R F V HVE V+PVRDL II EEL L+D E++ + K + Sbjct: 137 NIRSVDALFQLVRAFPEAQVPHVEKSVDPVRDLQIIQEELLLKDAEFLESYLKKEGRS-- 194 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541 K LDT + ++V R + +W I +LN +TAKP +YL+NM + Sbjct: 195 ---PKTCAKALDTARRALEVVLGKGRQISKAEWNDEQIPILNSLNLLTAKPVVYLVNMDQ 251 Query: 542 TGYVQQKNKWLSKIKSWV 595 Y+ + + L IK WV Sbjct: 252 DDYLSDEQEALKGIKEWV 269
>sp|Q9CP90|ENGD_PASMU GTP-dependent nucleic acid-binding protein engD Length = 363 Score = 134 bits (336), Expect = 3e-31 Identities = 71/195 (36%), Positives = 114/195 (58%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PFCTI+P P PD R + L E P +P + VDIAGLV GA + GL + FL+ Sbjct: 33 PFCTIEPNTGVVPMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLA 92 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 +I DAI H+ R FE++D++HV G +NP D+D I EL L D + + + +++ Sbjct: 93 NIRETDAIGHVVRCFENDDIVHVAGQINPAEDIDTINTELALADLDSCERAIQRLQKR-A 151 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541 +GGDK+ + EL M K+ V E+ +RS D +++ + + F+T KP +Y+ N++E Sbjct: 152 KGGDKDAKFELSIMEKILP-VLENAGMIRSIDLDKDELQAIKGYNFLTLKPTMYIANVNE 210 Query: 542 TGYVQQKNKWLSKIK 586 G+ + N +L +++ Sbjct: 211 DGF--ENNPYLDRVR 223
>sp|P44681|ENGD_HAEIN GTP-dependent nucleic acid-binding protein engD Length = 363 Score = 129 bits (324), Expect = 7e-30 Identities = 69/195 (35%), Positives = 113/195 (57%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PFCTI+P P PD R + L E P +P + VDIAGLV GA + GL + FL+ Sbjct: 33 PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLA 92 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 +I DAI H+ R FE++D++HV G ++P+ D+D I EL L D + + + +++ Sbjct: 93 NIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKR-A 151 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541 +GGDK + EL M K+ V E+ +RS +++ + + F+T KP +Y+ N++E Sbjct: 152 KGGDKEAKFELSVMEKILP-VLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNE 210 Query: 542 TGYVQQKNKWLSKIK 586 G+ + N +L +++ Sbjct: 211 DGF--ENNPYLDRVR 223
>sp|P37518|ENGD_BACSU GTP-dependent nucleic acid-binding protein engD Length = 366 Score = 124 bits (311), Expect = 2e-28 Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 1/198 (0%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PFCTIDP PDDR + L E NP VP DIAG+VKGA + GL + FLS Sbjct: 33 PFCTIDPNVGIVEVPDDRLQKLTELVNPKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLS 92 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 HI VDAI H+ R F +++ HV G V+P+ D++ I EL L D E + K + ++ + Sbjct: 93 HIRQVDAICHVVRAFSDDNITHVSGKVDPIDDIETINLELILADMETVEKRITRV-SKLA 151 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541 + DK+ E + + K+++ E ++P RS ++ +++ + +T+KP +Y+ N+SE Sbjct: 152 KQKDKDAVFEFEILSKLKE-AFESEKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSE 210 Query: 542 TGYVQQK-NKWLSKIKSW 592 N+ ++KI+ + Sbjct: 211 DEVADPSGNENVAKIREY 228
>sp|P0ABU4|ENGD_SHIFL GTP-dependent nucleic acid-binding protein engD sp|P0ABU2|ENGD_ECOLI GTP-dependent nucleic acid-binding protein engD sp|P0ABU3|ENGD_ECO57 GTP-dependent nucleic acid-binding protein engD Length = 363 Score = 124 bits (310), Expect = 3e-28 Identities = 68/195 (34%), Positives = 112/195 (57%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PFCTI+P P PD R + L E P +P + VDIAGLVKGA + GL + FL+ Sbjct: 33 PFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLT 92 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 +I +AI H+ R FE++++IHV G VNP D+++I EL L D + + + +++ Sbjct: 93 NIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKK-A 151 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541 +GGDK+ + EL + K + E+ +R+ D + + F+T KP +Y+ N++E Sbjct: 152 KGGDKDAKAELAVLEKCLPQL-ENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNE 210 Query: 542 TGYVQQKNKWLSKIK 586 G+ + N +L +++ Sbjct: 211 DGF--ENNPYLDQVR 223
>sp|Q7VMI2|ENGD_HAEDU GTP-dependent nucleic acid-binding protein engD Length = 363 Score = 122 bits (306), Expect = 8e-28 Identities = 66/195 (33%), Positives = 111/195 (56%) Frame = +2 Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181 PFCTI+P P PD R + L E NP +P + VDIAGLV GA + GL + FL+ Sbjct: 33 PFCTIEPNTGVVPMPDPRLDALAEIVNPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLA 92 Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361 +I DAI H+ R FE++D++HV G ++P D++ I EL L D + + + +++ Sbjct: 93 NIRETDAIGHVVRCFENDDIVHVAGKIDPADDIETINTELALADLDSCERAIQRLQKR-A 151 Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541 + GDK+ + EL + K+ V E+ +RS ++ + + F+T KP +Y+ N++E Sbjct: 152 KSGDKDAKFELSILEKILP-VLENAGMIRSVALDKDELHAIKGYNFLTLKPTMYIANVNE 210 Query: 542 TGYVQQKNKWLSKIK 586 + + N +L +++ Sbjct: 211 DSF--ENNPYLDRVR 223
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,063,123 Number of Sequences: 369166 Number of extensions: 1609158 Number of successful extensions: 4735 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4568 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4720 length of database: 68,354,980 effective HSP length: 106 effective length of database: 48,773,070 effective search space used: 5511356910 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)