Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C17
(659 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NTK5|PTD4_HUMAN Putative GTP-binding protein PTD004 255 6e-68
sp|Q9CZ30|PTD4_MOUSE Putative GTP-binding protein PTD004 ho... 254 1e-67
sp|P91917|YCHF_CAEEL Putative GTP-binding protein W08E3.3 233 4e-61
sp|P38219|YBN5_YEAST Putative GTP-binding protein YBR025C 188 9e-48
sp|O14078|YEAD_SCHPO Hypothetical GTP-binding protein UNK4.... 151 2e-36
sp|Q9CP90|ENGD_PASMU GTP-dependent nucleic acid-binding pro... 134 3e-31
sp|P44681|ENGD_HAEIN GTP-dependent nucleic acid-binding pro... 129 7e-30
sp|P37518|ENGD_BACSU GTP-dependent nucleic acid-binding pro... 124 2e-28
sp|P0ABU4|ENGD_SHIFL GTP-dependent nucleic acid-binding pro... 124 3e-28
sp|Q7VMI2|ENGD_HAEDU GTP-dependent nucleic acid-binding pro... 122 8e-28
>sp|Q9NTK5|PTD4_HUMAN Putative GTP-binding protein PTD004
Length = 396
Score = 255 bits (652), Expect = 6e-68
Identities = 117/199 (58%), Positives = 154/199 (77%), Gaps = 1/199 (0%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PFCTIDP ESR P PD+RF++LC+YH P +++PA+L+VVDIAGLVKGA GL +AFLS
Sbjct: 53 PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLS 112
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
HI+ D IFH+TR FE +D+ HVEG V+P+RD++II EEL+L+D+E I +DK+E
Sbjct: 113 HISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAV 172
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVR-SGDWIPTDIEVLNRHLFITAKPCIYLINMS 538
RGGDK L+PE D M KV+ V + K+PVR DW +IEVLN+HLF+T+KP +YL+N+S
Sbjct: 173 RGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLS 232
Query: 539 ETGYVQQKNKWLSKIKSWV 595
E Y+++KNKWL KIK WV
Sbjct: 233 EKDYIRKKNKWLIKIKEWV 251
>sp|Q9CZ30|PTD4_MOUSE Putative GTP-binding protein PTD004 homolog
Length = 396
Score = 254 bits (650), Expect = 1e-67
Identities = 117/199 (58%), Positives = 154/199 (77%), Gaps = 1/199 (0%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PFCTIDP ESR P PD+RF++LC+YH P +++PA+L+VVDIAGLVKGA GL +AFLS
Sbjct: 53 PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLS 112
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
HI+ D IFH+TR FE +D+ HVEG V+P+RD++II EEL+L+D+E I +DK+E
Sbjct: 113 HISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPILDKLEKVAV 172
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVR-SGDWIPTDIEVLNRHLFITAKPCIYLINMS 538
RGGDK L+PE D M KV+ V + K+PVR DW +IEVLN+HLF+T+KP +YL+N+S
Sbjct: 173 RGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLS 232
Query: 539 ETGYVQQKNKWLSKIKSWV 595
E Y+++KNKWL KIK WV
Sbjct: 233 EKDYIRKKNKWLIKIKEWV 251
>sp|P91917|YCHF_CAEEL Putative GTP-binding protein W08E3.3
Length = 395
Score = 233 bits (593), Expect = 4e-61
Identities = 106/198 (53%), Positives = 150/198 (75%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PFCTIDP ESR DDRF+WL ++ P ++VPA+L+V DIAGLVKGA E GL +AFLS
Sbjct: 52 PFCTIDPNESRVAVQDDRFDWLVNHYKPASKVPAFLNVTDIAGLVKGASEGQGLGNAFLS 111
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
H++ DA+FH+ R F+ +DV HVEG+V+PVRDL+II+ EL +D ++I +DK+E +
Sbjct: 112 HVSACDALFHLCRAFDDDDVTHVEGEVDPVRDLEIISNELFAKDLQFIDGPLDKVEKLFT 171
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
R DK + E DT+++V+K + E+K+PVR W +IE+LN+HLF+TAKP +YL+N+SE
Sbjct: 172 RANDKTKKIEYDTLVRVKKCL-EEKKPVRQELWNEKEIEILNKHLFLTAKPIVYLVNLSE 230
Query: 542 TGYVQQKNKWLSKIKSWV 595
Y+++KNKWL KIK+W+
Sbjct: 231 KDYIRKKNKWLPKIKAWI 248
>sp|P38219|YBN5_YEAST Putative GTP-binding protein YBR025C
Length = 394
Score = 188 bits (478), Expect = 9e-48
Identities = 98/203 (48%), Positives = 134/203 (66%), Gaps = 5/203 (2%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCE-YHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFL 178
PF TIDP E+R P RF+ LCE Y + VPA+L+V DIAGL KGA GL +AFL
Sbjct: 52 PFATIDPEEARVIVPSPRFDKLCEIYKKTASEVPAHLTVYDIAGLTKGASAGEGLGNAFL 111
Query: 179 SHINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAY 358
SHI VD+I+ + R F+ ++IHVEGDV+PVRDL+II +ELRL+D E+ K ++ E
Sbjct: 112 SHIRSVDSIYQVVRCFDDAEIIHVEGDVDPVRDLEIINQELRLKDIEFAQKALEGAEKIA 171
Query: 359 FRGGD----KNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYL 526
RGG K + E+D + K+ KL+ E + V + W ++E++N +TAKPCIYL
Sbjct: 172 KRGGQSLEVKQKKEEMDLITKIIKLL-ESGQRVANHSWTSKEVEIINSMFLLTAKPCIYL 230
Query: 527 INMSETGYVQQKNKWLSKIKSWV 595
IN+SE Y+++KNK L +IK WV
Sbjct: 231 INLSERDYIRKKNKHLLRIKEWV 253
>sp|O14078|YEAD_SCHPO Hypothetical GTP-binding protein UNK4.13c in chromosome I
Length = 407
Score = 151 bits (381), Expect = 2e-36
Identities = 79/198 (39%), Positives = 113/198 (57%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PF TIDP ++AP D ++E LCE + P TR+PA L++ D AGL + + + GL +AFLS
Sbjct: 77 PFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDTAGLTRNSSKGEGLGNAFLS 136
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
+I VDA+F + R F V HVE V+PVRDL II EEL L+D E++ + K +
Sbjct: 137 NIRSVDALFQLVRAFPEAQVPHVEKSVDPVRDLQIIQEELLLKDAEFLESYLKKEGRS-- 194
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
K LDT + ++V R + +W I +LN +TAKP +YL+NM +
Sbjct: 195 ---PKTCAKALDTARRALEVVLGKGRQISKAEWNDEQIPILNSLNLLTAKPVVYLVNMDQ 251
Query: 542 TGYVQQKNKWLSKIKSWV 595
Y+ + + L IK WV
Sbjct: 252 DDYLSDEQEALKGIKEWV 269
>sp|Q9CP90|ENGD_PASMU GTP-dependent nucleic acid-binding protein engD
Length = 363
Score = 134 bits (336), Expect = 3e-31
Identities = 71/195 (36%), Positives = 114/195 (58%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PFCTI+P P PD R + L E P +P + VDIAGLV GA + GL + FL+
Sbjct: 33 PFCTIEPNTGVVPMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLA 92
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
+I DAI H+ R FE++D++HV G +NP D+D I EL L D + + + +++
Sbjct: 93 NIRETDAIGHVVRCFENDDIVHVAGQINPAEDIDTINTELALADLDSCERAIQRLQKR-A 151
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
+GGDK+ + EL M K+ V E+ +RS D +++ + + F+T KP +Y+ N++E
Sbjct: 152 KGGDKDAKFELSIMEKILP-VLENAGMIRSIDLDKDELQAIKGYNFLTLKPTMYIANVNE 210
Query: 542 TGYVQQKNKWLSKIK 586
G+ + N +L +++
Sbjct: 211 DGF--ENNPYLDRVR 223
>sp|P44681|ENGD_HAEIN GTP-dependent nucleic acid-binding protein engD
Length = 363
Score = 129 bits (324), Expect = 7e-30
Identities = 69/195 (35%), Positives = 113/195 (57%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PFCTI+P P PD R + L E P +P + VDIAGLV GA + GL + FL+
Sbjct: 33 PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLA 92
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
+I DAI H+ R FE++D++HV G ++P+ D+D I EL L D + + + +++
Sbjct: 93 NIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKR-A 151
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
+GGDK + EL M K+ V E+ +RS +++ + + F+T KP +Y+ N++E
Sbjct: 152 KGGDKEAKFELSVMEKILP-VLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNE 210
Query: 542 TGYVQQKNKWLSKIK 586
G+ + N +L +++
Sbjct: 211 DGF--ENNPYLDRVR 223
>sp|P37518|ENGD_BACSU GTP-dependent nucleic acid-binding protein engD
Length = 366
Score = 124 bits (311), Expect = 2e-28
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 1/198 (0%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PFCTIDP PDDR + L E NP VP DIAG+VKGA + GL + FLS
Sbjct: 33 PFCTIDPNVGIVEVPDDRLQKLTELVNPKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLS 92
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
HI VDAI H+ R F +++ HV G V+P+ D++ I EL L D E + K + ++ +
Sbjct: 93 HIRQVDAICHVVRAFSDDNITHVSGKVDPIDDIETINLELILADMETVEKRITRV-SKLA 151
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
+ DK+ E + + K+++ E ++P RS ++ +++ + +T+KP +Y+ N+SE
Sbjct: 152 KQKDKDAVFEFEILSKLKE-AFESEKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSE 210
Query: 542 TGYVQQK-NKWLSKIKSW 592
N+ ++KI+ +
Sbjct: 211 DEVADPSGNENVAKIREY 228
>sp|P0ABU4|ENGD_SHIFL GTP-dependent nucleic acid-binding protein engD
sp|P0ABU2|ENGD_ECOLI GTP-dependent nucleic acid-binding protein engD
sp|P0ABU3|ENGD_ECO57 GTP-dependent nucleic acid-binding protein engD
Length = 363
Score = 124 bits (310), Expect = 3e-28
Identities = 68/195 (34%), Positives = 112/195 (57%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PFCTI+P P PD R + L E P +P + VDIAGLVKGA + GL + FL+
Sbjct: 33 PFCTIEPNTGVVPMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLT 92
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
+I +AI H+ R FE++++IHV G VNP D+++I EL L D + + + +++
Sbjct: 93 NIRETEAIGHVVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKK-A 151
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
+GGDK+ + EL + K + E+ +R+ D + + F+T KP +Y+ N++E
Sbjct: 152 KGGDKDAKAELAVLEKCLPQL-ENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNE 210
Query: 542 TGYVQQKNKWLSKIK 586
G+ + N +L +++
Sbjct: 211 DGF--ENNPYLDQVR 223
>sp|Q7VMI2|ENGD_HAEDU GTP-dependent nucleic acid-binding protein engD
Length = 363
Score = 122 bits (306), Expect = 8e-28
Identities = 66/195 (33%), Positives = 111/195 (56%)
Frame = +2
Query: 2 PFCTIDPPESRAPPPDDRFEWLCEYHNPMTRVPAYLSVVDIAGLVKGAPERHGLAHAFLS 181
PFCTI+P P PD R + L E NP +P + VDIAGLV GA + GL + FL+
Sbjct: 33 PFCTIEPNTGVVPMPDPRLDALAEIVNPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLA 92
Query: 182 HINGVDAIFHMTRVFESEDVIHVEGDVNPVRDLDIITEELRLQDQEYILKEVDKMETAYF 361
+I DAI H+ R FE++D++HV G ++P D++ I EL L D + + + +++
Sbjct: 93 NIRETDAIGHVVRCFENDDIVHVAGKIDPADDIETINTELALADLDSCERAIQRLQKR-A 151
Query: 362 RGGDKNLQPELDTMLKVRKLVCEDKRPVRSGDWIPTDIEVLNRHLFITAKPCIYLINMSE 541
+ GDK+ + EL + K+ V E+ +RS ++ + + F+T KP +Y+ N++E
Sbjct: 152 KSGDKDAKFELSILEKILP-VLENAGMIRSVALDKDELHAIKGYNFLTLKPTMYIANVNE 210
Query: 542 TGYVQQKNKWLSKIK 586
+ + N +L +++
Sbjct: 211 DSF--ENNPYLDRVR 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,063,123
Number of Sequences: 369166
Number of extensions: 1609158
Number of successful extensions: 4735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4720
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)