Planaria EST Database


DrC_01566

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01566
         (867 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19958|STO2_CAEEL  Stomatin protein 2                          252   8e-67
sp|Q27433|MEC2_CAEEL  Mechanosensory protein 2                    251   2e-66
sp|P27105|STOM_HUMAN  Erythrocyte band 7 integral membrane p...   248   1e-65
sp|P54116|STOM_MOUSE  Erythrocyte band 7 integral membrane p...   248   2e-65
sp|Q22165|STO4_CAEEL  Stomatin protein 4                          246   6e-65
sp|Q8TAV4|STML3_HUMAN  Stomatin-like protein 3                    244   2e-64
sp|Q6PE84|STML3_MOUSE  Stomatin-like protein 3 (Stomatin-rel...   244   2e-64
sp|Q21190|UNC1_CAEEL  Uncoordinated protein 1 (Protein unc-1)     226   8e-59
sp|Q19200|STO1_CAEEL  Stomatin protein 1                          222   9e-58
sp|Q20657|STO3_CAEEL  Stomatin protein 3                          211   2e-54
>sp|Q19958|STO2_CAEEL Stomatin protein 2
          Length = 314

 Score =  252 bits (644), Expect = 8e-67
 Identities = 126/217 (58%), Positives = 164/217 (75%)
 Frame = +2

Query: 215 ISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLDSIRKIDL 394
           +S  +++  FP+S++FC+ VV +YERAVIFRLGRL G G KGPG+ F++PC++S  K+DL
Sbjct: 76  LSWIMVISTFPVSIYFCMKVVQEYERAVIFRLGRLIGGGAKGPGIFFVLPCIESYTKVDL 135

Query: 395 RTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQTTLRTVLG 574
           RT +F++P QE+LTKDSVT +VDAV+YYRI N  +S+ NVENA+ ST+LLAQTTLR +LG
Sbjct: 136 RTVSFSVPPQEILTKDSVTTSVDAVIYYRISNATVSVANVENAHHSTRLLAQTTLRNMLG 195

Query: 575 TVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXXXXXXXXX 754
           T  L ++L+ R+ +A +MQ  LD ATE WG+KVERV+IKDVRLPIQLQ            
Sbjct: 196 TRSLSEILSDRETLAASMQTILDEATESWGIKVERVEIKDVRLPIQLQRAMAAEAEATRE 255

Query: 755 XXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
               VIAAEGEQKAS A + AA  +A+SP +LQLRYL
Sbjct: 256 ARAKVIAAEGEQKASRALRDAASVIAQSPAALQLRYL 292
>sp|Q27433|MEC2_CAEEL Mechanosensory protein 2
          Length = 481

 Score =  251 bits (640), Expect = 2e-66
 Identities = 129/222 (58%), Positives = 160/222 (72%)
 Frame = +2

Query: 200 YLFKIISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLDSI 379
           ++  I+S  ++    PIS   C+ VV +YERAVIFRLGRL   G KGPG+ FI+PC+D+ 
Sbjct: 119 WILTILSYLLIFFTLPISACMCIKVVQEYERAVIFRLGRLMPGGAKGPGIFFIVPCIDTY 178

Query: 380 RKIDLRTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQTTL 559
           RK+DLR  +F +P QE+L+KDSVTVAVDAVVY+RI N  +S+ NVE+A RSTKLLAQTTL
Sbjct: 179 RKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNVEDAARSTKLLAQTTL 238

Query: 560 RTVLGTVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXXXX 739
           R +LGT  L ++L+ R+ I+H MQ  LD ATE WGVKVERV++KDVRLP+QLQ       
Sbjct: 239 RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVKDVRLPVQLQRAMAAEA 298

Query: 740 XXXXXXXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
                    VI AEGEQKAS A K AA  +AESP +LQLRYL
Sbjct: 299 EAAREARAKVIVAEGEQKASRALKEAAEVIAESPSALQLRYL 340
>sp|P27105|STOM_HUMAN Erythrocyte band 7 integral membrane protein (Stomatin) (Protein
           7.2b)
          Length = 288

 Score =  248 bits (634), Expect = 1e-65
 Identities = 120/222 (54%), Positives = 162/222 (72%)
 Frame = +2

Query: 200 YLFKIISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLDSI 379
           ++    S    V+ FPIS++ C+ ++ +YERA+IFRLGR+   G KGPGL FI+PC DS 
Sbjct: 32  WILVAFSFLFTVITFPISIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSF 91

Query: 380 RKIDLRTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQTTL 559
            K+D+RT +F+IP QE+LTKDSVT++VD VVYYR+ N  +++ N+ NA+ +T+LLAQTTL
Sbjct: 92  IKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTL 151

Query: 560 RTVLGTVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXXXX 739
           R VLGT +L Q+L+ R++IAHNMQ  LD+AT+ WG+KVERV+IKDV+LP+QLQ       
Sbjct: 152 RNVLGTKNLSQILSDREEIAHNMQSTLDDATDAWGIKVERVEIKDVKLPVQLQRAMAAEA 211

Query: 740 XXXXXXXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
                    VIAAEGE  AS A K A++ + ESP +LQLRYL
Sbjct: 212 EASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYL 253
>sp|P54116|STOM_MOUSE Erythrocyte band 7 integral membrane protein (Stomatin) (Protein
           7.2b)
          Length = 284

 Score =  248 bits (632), Expect = 2e-65
 Identities = 123/241 (51%), Positives = 171/241 (70%)
 Frame = +2

Query: 143 VPERFAARESKFSFIQTFEYLFKIISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQ 322
           +PE F  RE+  + +    ++   +S   +++ FPIS++ C+ +V +YER +IFRLGR+ 
Sbjct: 15  IPESF--RENSKTELGACGWILVAVSFIFVLITFPISIWICIKIVKEYERVIIFRLGRIL 72

Query: 323 GKGPKGPGLVFIIPCLDSIRKIDLRTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMS 502
             G KGPGL FI+PC DS  K+D+RT +F+IP QEVLTKDSVT++VD VVYYR+ N  ++
Sbjct: 73  QGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLA 132

Query: 503 IVNVENANRSTKLLAQTTLRTVLGTVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERV 682
           + N+ NA+ +T+LLAQTTLR  LGT +L Q+L+ R++IAH+MQ  LD+AT+ WG+KVERV
Sbjct: 133 VANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERV 192

Query: 683 DIKDVRLPIQLQXXXXXXXXXXXXXXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRY 862
           +IKDV+LP+QLQ                VIAAEGE  AS A K A++ + ESP +LQLRY
Sbjct: 193 EIKDVKLPVQLQRAMAAEAEAAREARAKVIAAEGEMNASRALKEASMVITESPAALQLRY 252

Query: 863 L 865
           L
Sbjct: 253 L 253
>sp|Q22165|STO4_CAEEL Stomatin protein 4
          Length = 281

 Score =  246 bits (628), Expect = 6e-65
 Identities = 127/222 (57%), Positives = 162/222 (72%)
 Frame = +2

Query: 200 YLFKIISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLDSI 379
           ++  IIS  +++   P+S FFCL VV +YERAVIFRLGRL+  G +GPG+ FIIPC++S 
Sbjct: 28  WIITIISYLVVLFTLPLSAFFCLKVVQEYERAVIFRLGRLKHGGARGPGIFFIIPCIESF 87

Query: 380 RKIDLRTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQTTL 559
           +KIDLR  +F++P QE+L+KDSVTV+VDAV+Y+RI N  +S++NVE+A RSTKLLAQTTL
Sbjct: 88  KKIDLRVVSFDVPPQEILSKDSVTVSVDAVIYFRISNATVSVINVEDAARSTKLLAQTTL 147

Query: 560 RTVLGTVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXXXX 739
           R  LGT  L ++L+ RD I+  MQ  LD AT+ WGVKVERV+IKDVRLPIQLQ       
Sbjct: 148 RNFLGTRTLAEMLSSRDAISMQMQAALDEATDPWGVKVERVEIKDVRLPIQLQRAMAAEA 207

Query: 740 XXXXXXXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
                    +IAAEGEQ AS A   AA  +A SP ++QLRYL
Sbjct: 208 EAARAAGAKIIAAEGEQLASRALADAADVIATSPCAIQLRYL 249
>sp|Q8TAV4|STML3_HUMAN Stomatin-like protein 3
          Length = 291

 Score =  244 bits (623), Expect = 2e-64
 Identities = 117/217 (53%), Positives = 162/217 (74%)
 Frame = +2

Query: 215 ISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLDSIRKIDL 394
           +S  ++++ FPIS++ CL ++ +YERAV+FRLGR+Q    KGPGL+ ++PC+D   K+DL
Sbjct: 34  LSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVFVKVDL 93

Query: 395 RTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQTTLRTVLG 574
           RT T NIP QE+LT+DSVT  VD VVYYRI++ V ++ NV + +++T LLAQTTLR VLG
Sbjct: 94  RTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLG 153

Query: 575 TVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXXXXXXXXX 754
           T  L Q+L GR++IAH++Q  LD+ATE+WG++V RV+IKDVR+P+QLQ            
Sbjct: 154 TQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATRE 213

Query: 755 XXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
               V+AAEGE  AS + K+A++ LAESPI+LQLRYL
Sbjct: 214 ARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYL 250
>sp|Q6PE84|STML3_MOUSE Stomatin-like protein 3 (Stomatin-related olfactory protein)
          Length = 287

 Score =  244 bits (623), Expect = 2e-64
 Identities = 117/222 (52%), Positives = 165/222 (74%)
 Frame = +2

Query: 200 YLFKIISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLDSI 379
           ++   +S  +++V FPIS++ CL ++ +YERAV+FRLGR+Q    KGPGL+ ++PC+D  
Sbjct: 25  WILFFLSFLLMLVTFPISVWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLPCIDVF 84

Query: 380 RKIDLRTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQTTL 559
            K+DLRT T NIP QE+LT+DSVT  VD VVYYRI++ V ++ NV + +++T LLAQTTL
Sbjct: 85  VKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTL 144

Query: 560 RTVLGTVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXXXX 739
           R VLGT  L Q+L+GR++IAH++Q  LD+ATE+WG++V RV+IKDVR+P+QLQ       
Sbjct: 145 RNVLGTQTLSQILSGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEA 204

Query: 740 XXXXXXXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
                    V+AAEGE  AS + K+A++ LAESP++LQLRYL
Sbjct: 205 EATREARAKVLAAEGEMNASKSLKSASMVLAESPVALQLRYL 246
>sp|Q21190|UNC1_CAEEL Uncoordinated protein 1 (Protein unc-1)
          Length = 285

 Score =  226 bits (575), Expect = 8e-59
 Identities = 116/224 (51%), Positives = 155/224 (69%)
 Frame = +2

Query: 194 FEYLFKIISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLD 373
           F Y  + +S  +++V FP S+  CL V+ +YER VIFR+GRL   G +GPG++FIIPC+D
Sbjct: 31  FGYALQALSWILIIVTFPFSMCVCLKVIKEYERVVIFRIGRLVFGGARGPGMIFIIPCID 90

Query: 374 SIRKIDLRTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQT 553
           + RKIDLR  ++ +P QE+L+KDSVTV+VDAVVY+R  +P+ S+ NV++A  STKLLAQT
Sbjct: 91  TYRKIDLRVVSYAVPPQEILSKDSVTVSVDAVVYFRTSDPIASVNNVDDAIYSTKLLAQT 150

Query: 554 TLRTVLGTVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXX 733
           TLR  LG   L ++LT R+ IA   +  LD  TE WGVKVERV++KD+RLP QL      
Sbjct: 151 TLRNALGMKTLTEMLTEREAIAQLCETILDEGTEHWGVKVERVEVKDIRLPQQLTRAMAA 210

Query: 734 XXXXXXXXXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
                      V+AAEGEQKAS A K AA  +  +P++LQLR+L
Sbjct: 211 EAEAAREARAKVVAAEGEQKASRALKEAADVIQANPVALQLRHL 254
>sp|Q19200|STO1_CAEEL Stomatin protein 1
          Length = 330

 Score =  222 bits (566), Expect = 9e-58
 Identities = 111/217 (51%), Positives = 159/217 (73%)
 Frame = +2

Query: 215 ISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLDSIRKIDL 394
           +S  ++ + FP+S+F C+ +V +Y+RAV+FRLGRL     KGPG+ FIIPC+D+   IDL
Sbjct: 47  MSYVLIFLTFPVSVFMCIKIVQEYQRAVVFRLGRLV-PDVKGPGIFFIIPCIDTFLNIDL 105

Query: 395 RTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQTTLRTVLG 574
           R  ++N+P+QE+L++DSVTV+VDAVVY+++F+P+ S+V V NA  STKLLAQTTLRT+LG
Sbjct: 106 RVASYNVPSQEILSRDSVTVSVDAVVYFKVFDPITSVVGVGNATDSTKLLAQTTLRTILG 165

Query: 575 TVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXXXXXXXXX 754
           T  L ++L+ R+KI+ +M+  LD ATE WG+KVERV+++DVRLP Q+Q            
Sbjct: 166 THTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRD 225

Query: 755 XXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
               +IAAEGE +AS A   AA  +++S  ++QLRYL
Sbjct: 226 AGAKIIAAEGELRASAALAEAATIISKSEGAMQLRYL 262
>sp|Q20657|STO3_CAEEL Stomatin protein 3
          Length = 267

 Score =  211 bits (537), Expect = 2e-54
 Identities = 105/224 (46%), Positives = 155/224 (69%)
 Frame = +2

Query: 194 FEYLFKIISLFILVVFFPISLFFCLTVVAQYERAVIFRLGRLQGKGPKGPGLVFIIPCLD 373
           F+++  I +   L++ FP+S+FFC+ +V +Y+R VIFRLGRL    P+GPG+V ++P +D
Sbjct: 15  FDFVALICAWAFLLLTFPVSIFFCVKIVKEYDRMVIFRLGRLWQDNPRGPGIVLVLPFID 74

Query: 374 SIRKIDLRTFTFNIPTQEVLTKDSVTVAVDAVVYYRIFNPVMSIVNVENANRSTKLLAQT 553
           S + +DLR  ++++PTQE+LT+DSVT+ VDA VYYR  +P+ S+  V +A+ ST+ LAQ+
Sbjct: 75  SHKTVDLRVMSYDVPTQEMLTRDSVTIGVDAAVYYRTSDPIASLARVNDAHMSTRQLAQS 134

Query: 554 TLRTVLGTVDLFQLLTGRDKIAHNMQGCLDNATEIWGVKVERVDIKDVRLPIQLQXXXXX 733
           +LR VLGT  L +L+T R  IA  ++  LD+AT  WG+ VERV+IKD+RLP ++      
Sbjct: 135 SLRNVLGTRSLAELMTDRHGIAVQVKYILDSATLFWGIHVERVEIKDIRLpreMCRAMAA 194

Query: 734 XXXXXXXXXXXVIAAEGEQKASVAYKAAAIELAESPISLQLRYL 865
                      V+ A+GE  AS+A++ AA ELA SP +LQLRYL
Sbjct: 195 EAEAQRESDAKVVTAQGELDASMAFQKAADELAGSPTALQLRYL 238
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,402,953
Number of Sequences: 369166
Number of extensions: 1254439
Number of successful extensions: 3271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3246
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)