Planaria EST Database


DrC_01563

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01563
         (885 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04931|ARP_PLAFA  Asparagine-rich protein (AG319) (ARP)         45   3e-04
sp|P27625|RPC1_PLAFA  DNA-directed RNA polymerase III larges...    45   3e-04
sp|P13824|ARP2_PLAFA  Clustered-asparagine-rich protein (CARP)     45   3e-04
sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            44   8e-04
sp|Q02629|NU100_YEAST  Nucleoporin NUP100/NSP100 (Nuclear po...    41   0.004
sp|P32770|NRP1_YEAST  Asparagine-rich protein (ARP protein)        41   0.004
sp|O00841|CUDA_DICDI  Putative transcriptional regulator cudA      41   0.004
sp|P09547|SWI1_YEAST  Transcription regulatory protein SWI1 ...    40   0.007
sp|P18160|KYK1_DICDI  Non-receptor tyrosine kinase spore lys...    40   0.007
sp|P54637|PTP3_DICDI  Tyrosine-protein phosphatase 3 (Protei...    39   0.015
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
          Length = 537

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 36/166 (21%), Positives = 77/166 (46%)
 Frame = +1

Query: 214 NQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAY 393
           N   I+  L ++N+      +N +  + SQ +NQ    + ++N++  N  NS    NN  
Sbjct: 220 NSINIKRNLNNNNN-----INNNMNKMGSQDKNQNSNNNFYMNYNYQNRKNSM---NNNM 271

Query: 394 NNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDNNDS 573
           NN + N      N++    + ++M   +NN+  N  +N +++++NS+ S  + N   +  
Sbjct: 272 NNNMNNNMNHNMNNNMNHNMNNNMNHNMNNNM-NHNMNNNMNNINSLDSDMSPNYHAHVK 330

Query: 574 VEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMNYQIKASTL 711
           + + +  NN     +    ++E  N   +    +N+ NY    +T+
Sbjct: 331 MSMMNYNNNESNTANPNQMNFEQTNNDNMKRENNNMNNYGYDDNTV 376

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
 Frame = +1

Query: 238 LFSSNSDPQIFTSNTIVGIHSQ----YQNQQPTVSHFVNHSMANTNNSFYG--------F 381
           + S NS+ +    N  + +++     Y NQQ   S F+ +   N N +++         F
Sbjct: 53  MHSRNSNVEEHLRNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHF 112

Query: 382 NNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSI--------- 534
            N Y+N   N   ++  D++      +M G +NN + N     +++++N           
Sbjct: 113 KNKYDN---NNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFY 169

Query: 535 TSGTNTN-----VDNNDSVEITSTQNNYIINNSFGS---KSYENQNLSK--LCDSKSNLM 684
           T+  N N      +NND++ I    NN   NN+  +    +Y+N N+++    + K NL 
Sbjct: 170 TNYMNKNNLKFTQNNNDNMNINEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLN 229

Query: 685 N 687
           N
Sbjct: 230 N 230

 Score = 37.0 bits (84), Expect = 0.073
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 24/155 (15%)
 Frame = +1

Query: 295 HSQYQNQQPTVSHFVNHSMANTNNSFYGFNNA---------------YNNQLTNTPILQA 429
           H+   N    +++ +NH+M N  N+    ++                YNN  +NT     
Sbjct: 289 HNMNNNMNHNMNNNMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTA--NP 346

Query: 430 NDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGT---------NTNVDNNDSVEI 582
           N  +F Q  +      NN+  N   + +   +N+ T  T         N N  NN++   
Sbjct: 347 NQMNFEQTNNDNMKRENNNMNNYGYDDNTVHVNNNTPSTDFFSRAVGYNNNYLNNNNNMN 406

Query: 583 TSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMN 687
           ++  NN    N+  +++ EN+N++   DS +N  N
Sbjct: 407 SAVNNNSSNGNNMKNENSENKNVADNNDSLNNNKN 441

 Score = 36.6 bits (83), Expect = 0.096
 Identities = 44/174 (25%), Positives = 64/174 (36%), Gaps = 19/174 (10%)
 Frame = +1

Query: 184 NVVFQGNGSTNQFPIQSQLFSS-------NSDPQIFTSNTIVGIH--SQYQNQQPTVSHF 336
           N +   N + N +  Q   FSS       N +    T      IH  ++Y N        
Sbjct: 67  NSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYDNN------- 119

Query: 337 VNHSMANTNNS----FYGFNNAYNNQLTNTPILQA--NDSDFAQLPSSMFGFLNNSSANR 498
            N SM NT+N+     Y      NN   N   L+   N +++     + F + N  + N 
Sbjct: 120 -NSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKF-YTNYMNKNN 177

Query: 499 LV----NCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQN 648
           L     N    ++N   +  N N +NN+ V      NN   NNS   K   N N
Sbjct: 178 LKFTQNNNDNMNINEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLNNN 231

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
 Frame = +1

Query: 193 FQGNGSTNQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTN--N 366
           +  N S    P Q     +N+D     +N +    + Y     TV   VN++  +T+  +
Sbjct: 336 YNNNESNTANPNQMNFEQTNNDNMKRENNNM----NNYGYDDNTVH--VNNNTPSTDFFS 389

Query: 367 SFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGT 546
              G+NN Y N   N      N+S      S+     N +S N+ V  +  SLN+     
Sbjct: 390 RAVGYNNNYLNNNNNMNSAVNNNS------SNGNNMKNENSENKNVADNNDSLNNN-KNN 442

Query: 547 NTNVDNNDSVEITSTQNNYIINNSFGSKSYENQN 648
           N N++ N+S+   +T NN        +  Y NQN
Sbjct: 443 NNNINMNESINNNNTLNN--------NNEYNNQN 468

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
 Frame = +1

Query: 355 NTNNSFYGFNNAYNNQLTNTPI--LQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLN 528
           N +N+ +  N+     L N  I    +N +++    +    F+ N + N   N     +N
Sbjct: 48  NNSNTMHSRNSNVEEHLRNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMN 107

Query: 529 SITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMNYQIKAST 708
           +     N   +NN S++ T         N  G+ + +N N+  L  + +N+  Y+  A  
Sbjct: 108 NNIHFKNKYDNNNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYL-RNINNINEYKGSAKN 166

Query: 709 LTWEDLAN 732
             + +  N
Sbjct: 167 KFYTNYMN 174

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
 Frame = +1

Query: 274 SNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQL 453
           +N +  I+S   +  P     V  SM N NN+    N A  NQ+      Q N+ +  + 
Sbjct: 308 NNNMNNINSLDSDMSPNYHAHVKMSMMNYNNN--ESNTANPNQMN---FEQTNNDNMKRE 362

Query: 454 PSSM--FGFLNN--------------SSANRLVNCSLSSLNSITSGTNTNVDNNDSVEIT 585
            ++M  +G+ +N              S A    N  L++ N++ S  N N  N ++++  
Sbjct: 363 NNNMNNYGYDDNTVHVNNNTPSTDFFSRAVGYNNNYLNNNNNMNSAVNNNSSNGNNMKNE 422

Query: 586 STQNNYIINNSFGSKSYENQN 648
           +++N  + +N+    + +N N
Sbjct: 423 NSENKNVADNNDSLNNNKNNN 443
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
          Length = 2339

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 29/125 (23%), Positives = 61/125 (48%)
 Frame = +1

Query: 304  YQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNN 483
            Y+N+ P + H  + +  +  N+ Y   N  NN  +N  I+  NDS+   + +      N+
Sbjct: 1052 YKNKIPYLPHVQHQNKTSNMNNIYNNMNNINNNDSNRSIIYNNDSNMNNINN------ND 1105

Query: 484  SSANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLC 663
            S+ N + N + +  N   + +N ++ +N+   + S  NN   +++  S    N N++ + 
Sbjct: 1106 SNMNSIHNNNSNMNNIHNNDSNRSIIHNNDSNMNSIHNN---DSNMNSIHNNNSNMNNIH 1162

Query: 664  DSKSN 678
            ++ SN
Sbjct: 1163 NNDSN 1167

 Score = 39.3 bits (90), Expect = 0.015
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 3/176 (1%)
 Frame = +1

Query: 127  KNRYKFQPTHRAWPITPEINVVFQG-NGSTNQFPIQSQLFSSNSDPQIFTSN--TIVGIH 297
            KN+  + P  +    T  +N ++   N   N    +S +++++S+     +N   +  IH
Sbjct: 1053 KNKIPYLPHVQHQNKTSNMNNIYNNMNNINNNDSNRSIIYNNDSNMNNINNNDSNMNSIH 1112

Query: 298  SQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFL 477
            +   N     ++  N S+ + N+S    N+ +NN      I   N        S+M    
Sbjct: 1113 NNNSNMNNIHNNDSNRSIIHNNDS--NMNSIHNNDSNMNSIHNNN--------SNMNNIH 1162

Query: 478  NNSSANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQ 645
            NN S   +++ + S++NSI +    N  NN++     T N YI N S   ++  N+
Sbjct: 1163 NNDSNRSIIHNNDSNMNSIHN----NDSNNNNNYKDCTHNPYICNESLIIRNIMNR 1214

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 15/234 (6%)
 Frame = +1

Query: 37   RSKLPPQPEKDIEEIQQTISMQLKLQQHHTKNRYKFQPTHRAWPITPEINVVFQGNGSTN 216
            R+ + P P   I+E+     + ++L    T N+Y             ++ ++ + NG  N
Sbjct: 364  RTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNID----------KLKMLIK-NG-CN 411

Query: 217  QFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYG---FNN 387
            ++P  + +   +       ++    I + Y N    +S     ++ N  N++      N 
Sbjct: 412  KWPGANYIIKKSKK----GTDPYSDISTSYNNNSNNISSIGCSNIFNVVNNYINNNCKNV 467

Query: 388  AYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTN--VD 561
             YN +  N  +L  +  D     ++M   +NN+  N   N S ++L ++ +  N N    
Sbjct: 468  RYNIKDVNNNVLLKDMCDI----NNMNNDINNNINNIYKNTSETNLCNVNNHNNNNNIYC 523

Query: 562  NNDSVEITSTQNNYIINN---SFGSKSYENQNLS-------KLCDSKSNLMNYQ 693
            NN + +    + N   N     + +K++  QNL+        +CD    L N Q
Sbjct: 524  NNQTQDNEEERKNSQFNKISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQ 577
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
          Length = 443

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 11/195 (5%)
 Frame = +1

Query: 184 NVVFQGNGSTN-QFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQN---------QQPTVSH 333
           N  FQ N   N  F   S  + SN + + F  N  +  ++ Y N         Q  T ++
Sbjct: 120 NTFFQKNNMNNTNFSQGSTNYGSNYNSENFQGNNNMNNYNFYNNNSSNNNNNNQTNTQNN 179

Query: 334 FVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCS 513
           F+N +M N N +    NN  NN   N  ++  N ++  Q+ ++     NN   N   N +
Sbjct: 180 FMNRNMKNKNMN----NNNNNNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNNNNYN 235

Query: 514 LSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMN-Y 690
               N+  +  +   D   S    +  NN I NN+  + +  N N      + S+L   Y
Sbjct: 236 ----NNAKNVNDMYRDGEMSPNHLNNNNNNINNNNNNNNNNNNNNNVMFRQNNSHLAQMY 291

Query: 691 QIKASTLTWEDLANV 735
           Q   ++L  ED+ NV
Sbjct: 292 QANDNSL--EDVENV 304

 Score = 39.3 bits (90), Expect = 0.015
 Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 12/190 (6%)
 Frame = +1

Query: 202 NGSTNQFPIQSQLFSSN----SDPQIFTSNTIVGIHSQYQNQQPTVSHFV-------NHS 348
           N ++N   + +  F++N    ++P +  +N ++  ++ Y N    V+          NH 
Sbjct: 196 NNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNNNNYNNNAKNVNDMYRDGEMSPNHL 255

Query: 349 MANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLN 528
             N NN     NN  NN   N  + + N+S  AQ+  +     N++S   + N    SL 
Sbjct: 256 NNNNNNINNNNNNNNNNNNNNNVMFRQNNSHLAQMYQA-----NDNSLEDVENVDGLSLW 310

Query: 529 SITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKS-YENQNLSKLCDSKSNLMNYQIKAS 705
            +    N N+   +++   +   N     ++ S +  + QN   L +       Y +   
Sbjct: 311 EMYKDKNNNIFYYNNLTKHANGINLFTQTNYSSITIMKKQNKMDLVEVTYLFSTYLVNGQ 370

Query: 706 TLTWEDLANV 735
           TL + +++ V
Sbjct: 371 TLIYSNISVV 380

 Score = 37.7 bits (86), Expect = 0.043
 Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
 Frame = +1

Query: 340 NHSMANTNNSFYGFNNAYNNQLT--NTPILQANDSDFAQLPSSM--FGFLNNSSANRLVN 507
           N++  N +N+F+  NN  N   +  +T      +S+  Q  ++M  + F NN+S+N   N
Sbjct: 112 NNNNNNNSNTFFQKNNMNNTNFSQGSTNYGSNYNSENFQGNNNMNNYNFYNNNSSNNNNN 171

Query: 508 CSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQN 648
              ++ N+  +    N + N++    ++ NN ++N +F +    N N
Sbjct: 172 NQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNN 218

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
 Frame = +1

Query: 382 NNAYNNQLTNTPILQ--ANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTN 555
           NN  NN  +NT   +   N+++F+Q  S+ +G  N +S N   N ++++ N   + ++ N
Sbjct: 111 NNNNNNNNSNTFFQKNNMNNTNFSQ-GSTNYGS-NYNSENFQGNNNMNNYNFYNNNSSNN 168

Query: 556 VDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLM 684
            +NN     T+TQNN+ +N +  +K+  N N +   +S +N+M
Sbjct: 169 NNNNQ----TNTQNNF-MNRNMKNKNMNNNNNNN--NSNNNMM 204

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
 Frame = +1

Query: 334 FVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFA-QLPSSMFGFLNNSSANRLVNC 510
           + N S    NN     NN  N ++ NT ++  N  + A  +  ++   ++ S   R ++ 
Sbjct: 47  YFNKSKKQMNN-----NNFANKKIYNTALVTFNTHEEALNVLKNIKNLIDTSGEERNIDA 101

Query: 511 SLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMNY 690
             +  N      N N +NN+S       N    N S GS +Y +   S+     +N+ NY
Sbjct: 102 KFAVPNV---SINNNNNNNNSNTFFQKNNMNNTNFSQGSTNYGSNYNSENFQGNNNMNNY 158
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 43.5 bits (101), Expect = 8e-04
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
 Frame = +1

Query: 319 PTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANR 498
           PT +   N  + + NN+    NN+  N + N     +N+++     SS     NN+S N 
Sbjct: 257 PTHNTLGNGILNSNNNNNNNNNNSNINNINNNNNNNSNNNN----NSSNNNNNNNNSTNN 312

Query: 499 LVNCSLSSLNSITSGTNTNVDNND---SVEITSTQNNYIINNSFGSKSYENQNLSKLCDS 669
             N + ++ N+ T+  N N++NN+   +    +  N    NN+ G+ S  N N +     
Sbjct: 313 NTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQ 372

Query: 670 KSNLMNYQIKASTLTWEDLANVATTSXXXXXGLPYNIN 783
            +N  N    ++T T       ATT+      L  ++N
Sbjct: 373 NNNNNNTSNNSNTTT-------ATTTAPGGNNLTNSLN 403

 Score = 38.1 bits (87), Expect = 0.033
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
 Frame = +1

Query: 202 NGSTNQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGF 381
           N + N     +   ++N++    T+N     ++   N     ++ +N++  NTNN+    
Sbjct: 287 NNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNN---- 342

Query: 382 NNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVD 561
           NN  NNQ TN   +  N+S+    P+      NN+  N   N + ++ N+ T+ T     
Sbjct: 343 NNNANNQNTNNNNM-GNNSNNNNNPN------NNNHQNNNNNNTSNNSNTTTATTTAPGG 395

Query: 562 NNDSVEITSTQNNYIINNSFG--SKSYENQNLSKLCDSKSNLMNYQ 693
           NN +  + +  N   +    G  S    N N  K     +N M++Q
Sbjct: 396 NNLTNSLNNAGNLGNLGRVSGLHSSDPNNPNAQKSFPDSTNTMDFQ 441

 Score = 37.7 bits (86), Expect = 0.043
 Identities = 28/113 (24%), Positives = 52/113 (46%)
 Frame = +1

Query: 310 NQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSS 489
           N    +++  N++  N+NN+    NN  NN   N+     N+              NN++
Sbjct: 277 NNNSNINNINNNNNNNSNNNNNSSNN--NNNNNNSTNNNTNN--------------NNNN 320

Query: 490 ANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQN 648
            N   N + +++N+  + TN   +NN++    +T NN + NNS  + +  N N
Sbjct: 321 TNNNTNNNNNNINNNNNNTN---NNNNNANNQNTNNNNMGNNSNNNNNPNNNN 370

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
 Frame = +1

Query: 217 QFPIQSQLFSSNSDPQIFTSN---TIVGIHSQY-QNQQPTVS---------------HFV 339
           Q P Q Q        Q  T+N   TI  +H Q  Q QQP  +                 +
Sbjct: 10  QQPQQQQQPQQQQQQQATTANGATTIQNLHQQAPQMQQPQYNLHTTLPPPLMNPNGLGLM 69

Query: 340 NHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFA-QLPSSMFGFLNNSSANRLVNCSL 516
            H+M    N+  G N+  NN          N    A Q  SS+   +NN++ N   N ++
Sbjct: 70  GHNMMGGGNN--GNNSGNNNGQPQMHGTNLNGLSLAIQNQSSLPQPINNNNNNNNNNSNI 127

Query: 517 SSLNSITSGTNTNVDNNDSVEITSTQNN 600
           ++ N+ ++  N N ++N  +  + TQ++
Sbjct: 128 NNNNNNSNNNNNNNNSNLGINSSPTQSS 155
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear pore protein NUP100/NSP100)
          Length = 959

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 12/161 (7%)
 Frame = +1

Query: 205 GSTNQFPIQSQLFSSNSD--PQIFT-SNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFY 375
           G  +Q    S LF  N+   P  FT SNT +G+  Q  NQQ   +       A T  S +
Sbjct: 348 GQNSQTSGSSGLFGQNNQKQPNTFTQSNTGIGLFGQNNNQQQQSTGLFGAKPAGTTGSLF 407

Query: 376 GFNNAYN-NQLTNTPILQANDSDFAQLPSSMFG--------FLNNSSANRLVNCSLSSLN 528
           G N++   N L  T  +  +++  +Q  +S+FG        F  N +AN+  + +     
Sbjct: 408 GGNSSTQPNSLFGTTNVPTSNTQ-SQQGNSLFGATKLTNMPFGGNPTANQSGSGNSLFGT 466

Query: 529 SITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNL 651
              S T +   NN +     + N    NN+  S S  N  L
Sbjct: 467 KPASTTGSLFGNNTASTTVPSTNGLFGNNANNSTSTTNTGL 507
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
          Length = 719

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
 Frame = +1

Query: 241 FSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANT-NNSFYGFNNAYNNQLTNTP 417
           F + S+ QI T+N+   ++S   N    V+   + +++NT  N  YG    +N    NTP
Sbjct: 380 FPAPSNSQIHTANSNNNVNSSRNNLNNRVNSGSSSNISNTAANHPYGAPE-FNMIANNTP 438

Query: 418 -ILQANDSDF-AQLPSSMFGFLN----NSSANRLVNCSLSSLNSITSG--TNTNVDNNDS 573
             L  N + F A  P S    LN    NS +  ++    S  N+I      N N++NN++
Sbjct: 439 AALTYNRAHFPAITPLSRQNSLNMAPSNSGSPIIIADHFSGNNNIAPNYRYNNNINNNNN 498

Query: 574 VEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMN 687
                T N Y INN+       N N S   ++ +N  N
Sbjct: 499 NINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNNNHN 536

 Score = 37.7 bits (86), Expect = 0.043
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
 Frame = +1

Query: 382 NNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVD 561
           N  YNN + N      N+++   + ++ +   NN + N   N + S+ N+  +  + N  
Sbjct: 486 NYRYNNNINN------NNNNINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNNNHNNNH 539

Query: 562 NNDSVEITSTQNNYIINNSFGSKSYENQNLSK-LCDSKSNLMNYQIKASTLTWEDLA 729
           +N S+   S  NN   NN+  + +  N N+    C S         K ST T+ + A
Sbjct: 540 HNGSINSNSNTNNNNNNNNGNNSNNCNSNIGMGGCGSNMPFRAGDWKCSTCTYHNFA 596
>sp|O00841|CUDA_DICDI Putative transcriptional regulator cudA
          Length = 791

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
 Frame = +1

Query: 277 NTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLP 456
           N I+ +  Q Q QQ  +++  N+   N NN+    NN  NN   N      N+++     
Sbjct: 359 NNIIQLIQQQQQQQQLLNNVTNN--INNNNNINNNNNNNNNNNNNNNNNNNNNNNN---- 412

Query: 457 SSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDNNDS-----VEITSTQ----NNYII 609
                  NN++ N     + ++  + TS  N N +NN+      V+I +T+    NN II
Sbjct: 413 -------NNNNNNNNTTSTTTTTTTTTSSCNNNNNNNNENTEHIVKIENTECNNNNNNII 465

Query: 610 NNS 618
           NN+
Sbjct: 466 NNT 468

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 39/165 (23%), Positives = 57/165 (34%), Gaps = 3/165 (1%)
 Frame = +1

Query: 202 NGSTNQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGF 381
           N S N   I    + +    Q F +N   G +    NQQ    H V H            
Sbjct: 2   NQSQNFHNIDLGHYGAQGSNQSFNNNNN-GNNGMMMNQQQMQQHVVPHLHHLQQQQ---- 56

Query: 382 NNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVD 561
                 QL N P       D++  P            N   N S  S N I +  N N +
Sbjct: 57  QQPQQQQLRNVP-------DYSNSP------------NGTTNGSTMSPNCINANNNNNNN 97

Query: 562 NNDSVEITSTQNNYIINNSFGSKSYENQN---LSKLCDSKSNLMN 687
           N+++    +  NN   +N+  S    + N   + +L  S +NL N
Sbjct: 98  NSNNNNSNNNNNNNNASNNLTSNKSSSTNTPQIGQLQASPANLTN 142

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 31/141 (21%), Positives = 50/141 (35%)
 Frame = +1

Query: 235 QLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNT 414
           QL       Q   +N    I++         ++  N++  N NN+    NN  NN    T
Sbjct: 363 QLIQQQQQQQQLLNNVTNNINNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT 422

Query: 415 PILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQ 594
                  +               SS N   N +  +   I    NT  +NN++  I +T+
Sbjct: 423 STTTTTTT-------------TTSSCNNNNNNNNENTEHIVKIENTECNNNNNNIINNTE 469

Query: 595 NNYIINNSFGSKSYENQNLSK 657
           N+  IN    +   E Q+  K
Sbjct: 470 NDENINKPILNSKDEFQSAFK 490
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
           SWI1) (Transcription regulatory protein ADR6)
           (Regulatory protein GAM3)
          Length = 1314

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 9/179 (5%)
 Frame = +1

Query: 229 QSQLFSSNSD--------PQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFN 384
           Q QL+  N++          + T + I  + S  QN   +  +  ++S  N N  F  FN
Sbjct: 181 QQQLYGGNNNNNSTGIANDNVITPHFITNVQSISQNSSSSTPNTNSNSTPNANQQFLPFN 240

Query: 385 NAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDN 564
           N+ +N                 L S+    ++N +A+  ++ S S+ N     T+ N  N
Sbjct: 241 NSASNN--------------GNLTSNQ--LISNYAASNSMDRSSSASNEFVPNTSDN--N 282

Query: 565 NDSVEITSTQNNYIINNSFGSKSYENQNLSKL-CDSKSNLMNYQIKASTLTWEDLANVA 738
           N+S       NN+ + N+  +K+  N N++ +   + +N  N    A+T+  E  A  A
Sbjct: 283 NNS-------NNHNMRNNSNNKTSNNNNVTAVPAATPANTNNSTSNANTVFSERAAMFA 334

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
 Frame = +1

Query: 370 FYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTN 549
           F+  NN  NN  T T     N+++            NN++ N   N + ++ N+ ++G +
Sbjct: 3   FFNLNNNNNNNNTTTTTTTTNNNN-----------TNNNNTNNNNNPANNTNNNNSTGHS 51

Query: 550 TNVDNNDSVEITSTQNNYI--INNSFGSKSYENQNLSKLCDSKSNLMN 687
           +N +NN +   T+T  + +    N F  K ++ QNL    DS +N  N
Sbjct: 52  SNTNNNTNNNNTNTGASGVDDFQNFFDPKPFD-QNL----DSNNNNSN 94
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
           1)
          Length = 1584

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
 Frame = +1

Query: 202 NGSTNQFPIQSQLFSSNS---DPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSF 372
           NG+ N     +   ++N+   + +I T+ T     S   N +   S+  N++  N NN+ 
Sbjct: 403 NGNNNNNSNNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNN 462

Query: 373 YGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNT 552
              NN  NN   N                      N++S+N   N   ++ N+  S +N 
Sbjct: 463 NNNNNNNNNNNNNNN--------------------NSNSSNTNNNNINNTTNNNNSNSNN 502

Query: 553 NVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSK 657
           N +NN+S   +++ NN I NN+  + +  N  L+K
Sbjct: 503 NNNNNNSNSNSNSNNNNINNNNNNNNNNNNIYLTK 537

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
 Frame = +1

Query: 340 NHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDF---AQLPSSMFGFLNNSSANRLVNC 510
           N++ +N NN+    N   N ++T T     + S       + S+     NN++ N   N 
Sbjct: 406 NNNNSNNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNN 465

Query: 511 SLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMN 687
           + ++ N+  +  N+N  N ++  I +T NN   NNS  + +  N N +   +S +N +N
Sbjct: 466 NNNNNNNNNNNNNSNSSNTNNNNINNTTNN---NNSNSNNNNNNNNSNSNSNSNNNNIN 521

 Score = 37.4 bits (85), Expect = 0.056
 Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
 Frame = +1

Query: 340 NHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLS 519
           N++  N NN+  G         T+T     N+++     ++     NN++ N   N + +
Sbjct: 411 NNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNNNNNNN 470

Query: 520 SLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFG---SKSYENQNLSKLCDSKSNLMN 687
           + N+  + +N++  NN+++  T+  NN   NN+     S S  N N + + ++ +N  N
Sbjct: 471 NNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNNNNNNN 529

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
 Frame = +1

Query: 244 SSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPIL 423
           ++N+     T+N  +   +   N     ++  N+S +N+N++    NN  NN   N  I 
Sbjct: 475 NNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNNNNNNNNNNIY 534

Query: 424 QANDSDFAQLPSSMFGFL--NNSSANRLVNCSLSSLNSITS-----GTNTNVDNNDSVEI 582
                       S  G L  NNSS N   N S  S+ + +S         +++    +  
Sbjct: 535 LTKKPSIGSTDESSTGSLGGNNSSGNN--NSSSGSIGNNSSIIKQRSPPHSINGPLMLPP 592

Query: 583 TSTQNNYIINNSFGS 627
           +ST NN  I +S+ S
Sbjct: 593 SSTNNNNNIYSSYNS 607
>sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protein-tyrosine-phosphate
           phosphohydrolase 3)
          Length = 989

 Score = 39.3 bits (90), Expect = 0.015
 Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 37/203 (18%)
 Frame = +1

Query: 226 IQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSM---------ANTNNSFYG 378
           I S +   +S   ++T N  + I        P  S + N++           NTNN    
Sbjct: 2   ISSSMSYRHSTNSVYTLNPHLNIPISTSTTIPPTSFYANNTPEMIQSQSENTNTNNINNS 61

Query: 379 FNNAYNNQLTNTPILQANDSDFAQLPSSMFGFL----------NNSSAN----------- 495
            +N  NN   NTP   +  +  +  PS  F  L          NN++ N           
Sbjct: 62  SSNINNNN-NNTPDSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTTNNNNNNNNNNDD 120

Query: 496 -------RLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLS 654
                  +L N  +   N+  +  N N +NN++    +  NN   NN+  + +  N N +
Sbjct: 121 KFDTNALKLSNTMIIKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 180

Query: 655 KLCDSKSNLMNYQIKASTLTWED 723
              ++ SN  N +I   ++ +++
Sbjct: 181 NNNNNNSN-SNIEINVPSIQFDN 202

 Score = 37.7 bits (86), Expect = 0.043
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
 Frame = +1

Query: 115 QHHTKNRYKFQPTHRAWPITPEINVV---FQGNGSTNQFPIQSQLFSSNSDPQIFTSNTI 285
           +H T + Y   P H   PI+    +    F  N +     IQSQ  ++N+       N I
Sbjct: 9   RHSTNSVYTLNP-HLNIPISTSTTIPPTSFYANNTPEM--IQSQSENTNT-------NNI 58

Query: 286 VGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFN----NAYNNQLTNTPILQAN------- 432
               S   N        ++ S + +++    FN    N+ NN++ N      N       
Sbjct: 59  NNSSSNINNNNNNTPDSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTTNNNNNNNNNN 118

Query: 433 ----DSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNN 600
               D++  +L ++M    NN++ N   N + ++ N+  +  N N +NN++    +  NN
Sbjct: 119 DDKFDTNALKLSNTMIIKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 178

Query: 601 YIINNSFGSKS 633
              NN+  S S
Sbjct: 179 NNNNNNNNSNS 189

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
 Frame = +1

Query: 202 NGSTNQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGF 381
           NGST+  P Q+Q+       Q+           Q+Q  Q        +  AN ++     
Sbjct: 300 NGSTSSLPTQAQVQLQQMQQQM----------QQHQQHQ--------YKKANLSSLSTVV 341

Query: 382 NNAYNNQLTNTPI---LQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNT 552
           +N  NN   NT      Q N S F+   SS+F   +NSS +   + S S+ ++ TS +N+
Sbjct: 342 DNNLNNNPMNTSTSSPAQPNASPFSFSSSSLF---SNSSLSNSGSGSASTTSTSTSSSNS 398

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
 Frame = +1

Query: 202 NGSTNQFPIQSQLFSSNSDPQI-FTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYG 378
           N + N     S   S +S P + F    +  I+++  N   T     N++  N NN+   
Sbjct: 67  NNNNNTPDSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTT-----NNNNNNNNNNDDK 121

Query: 379 FN-NAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTN 555
           F+ NA   +L+NT I++ N+++     +      NN++ N   N + ++ N+  +  N N
Sbjct: 122 FDTNAL--KLSNTMIIKNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNN 173

Query: 556 VDNNDSVEITSTQNNYIINNSFGSKSYENQ 645
            +NN++    +  +N  I  +  S  ++N+
Sbjct: 174 NNNNNNNNNNNNNSNSNIEINVPSIQFDNE 203
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.317    0.129    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,169,284
Number of Sequences: 369166
Number of extensions: 1710203
Number of successful extensions: 6058
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5176
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)