Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A11
(885 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 45 3e-04
sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III larges... 45 3e-04
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 45 3e-04
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 44 8e-04
sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear po... 41 0.004
sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein) 41 0.004
sp|O00841|CUDA_DICDI Putative transcriptional regulator cudA 41 0.004
sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 40 0.007
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 40 0.007
sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protei... 39 0.015
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 45.1 bits (105), Expect = 3e-04
Identities = 36/166 (21%), Positives = 77/166 (46%)
Frame = +1
Query: 214 NQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAY 393
N I+ L ++N+ +N + + SQ +NQ + ++N++ N NS NN
Sbjct: 220 NSINIKRNLNNNNN-----INNNMNKMGSQDKNQNSNNNFYMNYNYQNRKNSM---NNNM 271
Query: 394 NNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDNNDS 573
NN + N N++ + ++M +NN+ N +N +++++NS+ S + N +
Sbjct: 272 NNNMNNNMNHNMNNNMNHNMNNNMNHNMNNNM-NHNMNNNMNNINSLDSDMSPNYHAHVK 330
Query: 574 VEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMNYQIKASTL 711
+ + + NN + ++E N + +N+ NY +T+
Sbjct: 331 MSMMNYNNNESNTANPNQMNFEQTNNDNMKRENNNMNNYGYDDNTV 376
Score = 41.6 bits (96), Expect = 0.003
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 31/181 (17%)
Frame = +1
Query: 238 LFSSNSDPQIFTSNTIVGIHSQ----YQNQQPTVSHFVNHSMANTNNSFYG--------F 381
+ S NS+ + N + +++ Y NQQ S F+ + N N +++ F
Sbjct: 53 MHSRNSNVEEHLRNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHF 112
Query: 382 NNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSI--------- 534
N Y+N N ++ D++ +M G +NN + N +++++N
Sbjct: 113 KNKYDN---NNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFY 169
Query: 535 TSGTNTN-----VDNNDSVEITSTQNNYIINNSFGS---KSYENQNLSK--LCDSKSNLM 684
T+ N N +NND++ I NN NN+ + +Y+N N+++ + K NL
Sbjct: 170 TNYMNKNNLKFTQNNNDNMNINEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLN 229
Query: 685 N 687
N
Sbjct: 230 N 230
Score = 37.0 bits (84), Expect = 0.073
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 24/155 (15%)
Frame = +1
Query: 295 HSQYQNQQPTVSHFVNHSMANTNNSFYGFNNA---------------YNNQLTNTPILQA 429
H+ N +++ +NH+M N N+ ++ YNN +NT
Sbjct: 289 HNMNNNMNHNMNNNMNHNMNNNMNNINSLDSDMSPNYHAHVKMSMMNYNNNESNTA--NP 346
Query: 430 NDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGT---------NTNVDNNDSVEI 582
N +F Q + NN+ N + + +N+ T T N N NN++
Sbjct: 347 NQMNFEQTNNDNMKRENNNMNNYGYDDNTVHVNNNTPSTDFFSRAVGYNNNYLNNNNNMN 406
Query: 583 TSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMN 687
++ NN N+ +++ EN+N++ DS +N N
Sbjct: 407 SAVNNNSSNGNNMKNENSENKNVADNNDSLNNNKN 441
Score = 36.6 bits (83), Expect = 0.096
Identities = 44/174 (25%), Positives = 64/174 (36%), Gaps = 19/174 (10%)
Frame = +1
Query: 184 NVVFQGNGSTNQFPIQSQLFSS-------NSDPQIFTSNTIVGIH--SQYQNQQPTVSHF 336
N + N + N + Q FSS N + T IH ++Y N
Sbjct: 67 NSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMNNNIHFKNKYDNN------- 119
Query: 337 VNHSMANTNNS----FYGFNNAYNNQLTNTPILQA--NDSDFAQLPSSMFGFLNNSSANR 498
N SM NT+N+ Y NN N L+ N +++ + F + N + N
Sbjct: 120 -NSSMKNTDNNKTDTSYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKF-YTNYMNKNN 177
Query: 499 LV----NCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQN 648
L N ++N + N N +NN+ V NN NNS K N N
Sbjct: 178 LKFTQNNNDNMNINEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLNNN 231
Score = 35.8 bits (81), Expect = 0.16
Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
Frame = +1
Query: 193 FQGNGSTNQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTN--N 366
+ N S P Q +N+D +N + + Y TV VN++ +T+ +
Sbjct: 336 YNNNESNTANPNQMNFEQTNNDNMKRENNNM----NNYGYDDNTVH--VNNNTPSTDFFS 389
Query: 367 SFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGT 546
G+NN Y N N N+S S+ N +S N+ V + SLN+
Sbjct: 390 RAVGYNNNYLNNNNNMNSAVNNNS------SNGNNMKNENSENKNVADNNDSLNNN-KNN 442
Query: 547 NTNVDNNDSVEITSTQNNYIINNSFGSKSYENQN 648
N N++ N+S+ +T NN + Y NQN
Sbjct: 443 NNNINMNESINNNNTLNN--------NNEYNNQN 468
Score = 32.0 bits (71), Expect = 2.4
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Frame = +1
Query: 355 NTNNSFYGFNNAYNNQLTNTPI--LQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLN 528
N +N+ + N+ L N I +N +++ + F+ N + N N +N
Sbjct: 48 NNSNTMHSRNSNVEEHLRNNSIDMNNSNINNYTNQQTRFSSFMENENENENKNYHTGGMN 107
Query: 529 SITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMNYQIKAST 708
+ N +NN S++ T N G+ + +N N+ L + +N+ Y+ A
Sbjct: 108 NNIHFKNKYDNNNSSMKNTDNNKTDTSYNMKGTINNDNNNMDYL-RNINNINEYKGSAKN 166
Query: 709 LTWEDLAN 732
+ + N
Sbjct: 167 KFYTNYMN 174
Score = 32.0 bits (71), Expect = 2.4
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Frame = +1
Query: 274 SNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQL 453
+N + I+S + P V SM N NN+ N A NQ+ Q N+ + +
Sbjct: 308 NNNMNNINSLDSDMSPNYHAHVKMSMMNYNNN--ESNTANPNQMN---FEQTNNDNMKRE 362
Query: 454 PSSM--FGFLNN--------------SSANRLVNCSLSSLNSITSGTNTNVDNNDSVEIT 585
++M +G+ +N S A N L++ N++ S N N N ++++
Sbjct: 363 NNNMNNYGYDDNTVHVNNNTPSTDFFSRAVGYNNNYLNNNNNMNSAVNNNSSNGNNMKNE 422
Query: 586 STQNNYIINNSFGSKSYENQN 648
+++N + +N+ + +N N
Sbjct: 423 NSENKNVADNNDSLNNNKNNN 443
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III largest subunit
Length = 2339
Score = 45.1 bits (105), Expect = 3e-04
Identities = 29/125 (23%), Positives = 61/125 (48%)
Frame = +1
Query: 304 YQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNN 483
Y+N+ P + H + + + N+ Y N NN +N I+ NDS+ + + N+
Sbjct: 1052 YKNKIPYLPHVQHQNKTSNMNNIYNNMNNINNNDSNRSIIYNNDSNMNNINN------ND 1105
Query: 484 SSANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLC 663
S+ N + N + + N + +N ++ +N+ + S NN +++ S N N++ +
Sbjct: 1106 SNMNSIHNNNSNMNNIHNNDSNRSIIHNNDSNMNSIHNN---DSNMNSIHNNNSNMNNIH 1162
Query: 664 DSKSN 678
++ SN
Sbjct: 1163 NNDSN 1167
Score = 39.3 bits (90), Expect = 0.015
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 3/176 (1%)
Frame = +1
Query: 127 KNRYKFQPTHRAWPITPEINVVFQG-NGSTNQFPIQSQLFSSNSDPQIFTSN--TIVGIH 297
KN+ + P + T +N ++ N N +S +++++S+ +N + IH
Sbjct: 1053 KNKIPYLPHVQHQNKTSNMNNIYNNMNNINNNDSNRSIIYNNDSNMNNINNNDSNMNSIH 1112
Query: 298 SQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFL 477
+ N ++ N S+ + N+S N+ +NN I N S+M
Sbjct: 1113 NNNSNMNNIHNNDSNRSIIHNNDS--NMNSIHNNDSNMNSIHNNN--------SNMNNIH 1162
Query: 478 NNSSANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQ 645
NN S +++ + S++NSI + N NN++ T N YI N S ++ N+
Sbjct: 1163 NNDSNRSIIHNNDSNMNSIHN----NDSNNNNNYKDCTHNPYICNESLIIRNIMNR 1214
Score = 30.8 bits (68), Expect = 5.2
Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 15/234 (6%)
Frame = +1
Query: 37 RSKLPPQPEKDIEEIQQTISMQLKLQQHHTKNRYKFQPTHRAWPITPEINVVFQGNGSTN 216
R+ + P P I+E+ + ++L T N+Y ++ ++ + NG N
Sbjct: 364 RTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNID----------KLKMLIK-NG-CN 411
Query: 217 QFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYG---FNN 387
++P + + + ++ I + Y N +S ++ N N++ N
Sbjct: 412 KWPGANYIIKKSKK----GTDPYSDISTSYNNNSNNISSIGCSNIFNVVNNYINNNCKNV 467
Query: 388 AYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTN--VD 561
YN + N +L + D ++M +NN+ N N S ++L ++ + N N
Sbjct: 468 RYNIKDVNNNVLLKDMCDI----NNMNNDINNNINNIYKNTSETNLCNVNNHNNNNNIYC 523
Query: 562 NNDSVEITSTQNNYIINN---SFGSKSYENQNLS-------KLCDSKSNLMNYQ 693
NN + + + N N + +K++ QNL+ +CD L N Q
Sbjct: 524 NNQTQDNEEERKNSQFNKISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQ 577
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 45.1 bits (105), Expect = 3e-04
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 11/195 (5%)
Frame = +1
Query: 184 NVVFQGNGSTN-QFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQN---------QQPTVSH 333
N FQ N N F S + SN + + F N + ++ Y N Q T ++
Sbjct: 120 NTFFQKNNMNNTNFSQGSTNYGSNYNSENFQGNNNMNNYNFYNNNSSNNNNNNQTNTQNN 179
Query: 334 FVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCS 513
F+N +M N N + NN NN N ++ N ++ Q+ ++ NN N N +
Sbjct: 180 FMNRNMKNKNMN----NNNNNNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNNNNYN 235
Query: 514 LSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMN-Y 690
N+ + + D S + NN I NN+ + + N N + S+L Y
Sbjct: 236 ----NNAKNVNDMYRDGEMSPNHLNNNNNNINNNNNNNNNNNNNNNVMFRQNNSHLAQMY 291
Query: 691 QIKASTLTWEDLANV 735
Q ++L ED+ NV
Sbjct: 292 QANDNSL--EDVENV 304
Score = 39.3 bits (90), Expect = 0.015
Identities = 39/190 (20%), Positives = 78/190 (41%), Gaps = 12/190 (6%)
Frame = +1
Query: 202 NGSTNQFPIQSQLFSSN----SDPQIFTSNTIVGIHSQYQNQQPTVSHFV-------NHS 348
N ++N + + F++N ++P + +N ++ ++ Y N V+ NH
Sbjct: 196 NNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNNNNYNNNAKNVNDMYRDGEMSPNHL 255
Query: 349 MANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLN 528
N NN NN NN N + + N+S AQ+ + N++S + N SL
Sbjct: 256 NNNNNNINNNNNNNNNNNNNNNVMFRQNNSHLAQMYQA-----NDNSLEDVENVDGLSLW 310
Query: 529 SITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKS-YENQNLSKLCDSKSNLMNYQIKAS 705
+ N N+ +++ + N ++ S + + QN L + Y +
Sbjct: 311 EMYKDKNNNIFYYNNLTKHANGINLFTQTNYSSITIMKKQNKMDLVEVTYLFSTYLVNGQ 370
Query: 706 TLTWEDLANV 735
TL + +++ V
Sbjct: 371 TLIYSNISVV 380
Score = 37.7 bits (86), Expect = 0.043
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Frame = +1
Query: 340 NHSMANTNNSFYGFNNAYNNQLT--NTPILQANDSDFAQLPSSM--FGFLNNSSANRLVN 507
N++ N +N+F+ NN N + +T +S+ Q ++M + F NN+S+N N
Sbjct: 112 NNNNNNNSNTFFQKNNMNNTNFSQGSTNYGSNYNSENFQGNNNMNNYNFYNNNSSNNNNN 171
Query: 508 CSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQN 648
++ N+ + N + N++ ++ NN ++N +F + N N
Sbjct: 172 NQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNN 218
Score = 36.2 bits (82), Expect = 0.12
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Frame = +1
Query: 382 NNAYNNQLTNTPILQ--ANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTN 555
NN NN +NT + N+++F+Q S+ +G N +S N N ++++ N + ++ N
Sbjct: 111 NNNNNNNNSNTFFQKNNMNNTNFSQ-GSTNYGS-NYNSENFQGNNNMNNYNFYNNNSSNN 168
Query: 556 VDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLM 684
+NN T+TQNN+ +N + +K+ N N + +S +N+M
Sbjct: 169 NNNNQ----TNTQNNF-MNRNMKNKNMNNNNNNN--NSNNNMM 204
Score = 32.0 bits (71), Expect = 2.4
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Frame = +1
Query: 334 FVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFA-QLPSSMFGFLNNSSANRLVNC 510
+ N S NN NN N ++ NT ++ N + A + ++ ++ S R ++
Sbjct: 47 YFNKSKKQMNN-----NNFANKKIYNTALVTFNTHEEALNVLKNIKNLIDTSGEERNIDA 101
Query: 511 SLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMNY 690
+ N N N +NN+S N N S GS +Y + S+ +N+ NY
Sbjct: 102 KFAVPNV---SINNNNNNNNSNTFFQKNNMNNTNFSQGSTNYGSNYNSENFQGNNNMNNY 158
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 43.5 bits (101), Expect = 8e-04
Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 3/158 (1%)
Frame = +1
Query: 319 PTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANR 498
PT + N + + NN+ NN+ N + N +N+++ SS NN+S N
Sbjct: 257 PTHNTLGNGILNSNNNNNNNNNNSNINNINNNNNNNSNNNN----NSSNNNNNNNNSTNN 312
Query: 499 LVNCSLSSLNSITSGTNTNVDNND---SVEITSTQNNYIINNSFGSKSYENQNLSKLCDS 669
N + ++ N+ T+ N N++NN+ + + N NN+ G+ S N N +
Sbjct: 313 NTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNNNNPNNNNHQ 372
Query: 670 KSNLMNYQIKASTLTWEDLANVATTSXXXXXGLPYNIN 783
+N N ++T T ATT+ L ++N
Sbjct: 373 NNNNNNTSNNSNTTT-------ATTTAPGGNNLTNSLN 403
Score = 38.1 bits (87), Expect = 0.033
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 2/166 (1%)
Frame = +1
Query: 202 NGSTNQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGF 381
N + N + ++N++ T+N ++ N ++ +N++ NTNN+
Sbjct: 287 NNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNN---- 342
Query: 382 NNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVD 561
NN NNQ TN + N+S+ P+ NN+ N N + ++ N+ T+ T
Sbjct: 343 NNNANNQNTNNNNM-GNNSNNNNNPN------NNNHQNNNNNNTSNNSNTTTATTTAPGG 395
Query: 562 NNDSVEITSTQNNYIINNSFG--SKSYENQNLSKLCDSKSNLMNYQ 693
NN + + + N + G S N N K +N M++Q
Sbjct: 396 NNLTNSLNNAGNLGNLGRVSGLHSSDPNNPNAQKSFPDSTNTMDFQ 441
Score = 37.7 bits (86), Expect = 0.043
Identities = 28/113 (24%), Positives = 52/113 (46%)
Frame = +1
Query: 310 NQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSS 489
N +++ N++ N+NN+ NN NN N+ N+ NN++
Sbjct: 277 NNNSNINNINNNNNNNSNNNNNSSNN--NNNNNNSTNNNTNN--------------NNNN 320
Query: 490 ANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQN 648
N N + +++N+ + TN +NN++ +T NN + NNS + + N N
Sbjct: 321 TNNNTNNNNNNINNNNNNTN---NNNNNANNQNTNNNNMGNNSNNNNNPNNNN 370
Score = 31.2 bits (69), Expect = 4.0
Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 20/148 (13%)
Frame = +1
Query: 217 QFPIQSQLFSSNSDPQIFTSN---TIVGIHSQY-QNQQPTVS---------------HFV 339
Q P Q Q Q T+N TI +H Q Q QQP + +
Sbjct: 10 QQPQQQQQPQQQQQQQATTANGATTIQNLHQQAPQMQQPQYNLHTTLPPPLMNPNGLGLM 69
Query: 340 NHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFA-QLPSSMFGFLNNSSANRLVNCSL 516
H+M N+ G N+ NN N A Q SS+ +NN++ N N ++
Sbjct: 70 GHNMMGGGNN--GNNSGNNNGQPQMHGTNLNGLSLAIQNQSSLPQPINNNNNNNNNNSNI 127
Query: 517 SSLNSITSGTNTNVDNNDSVEITSTQNN 600
++ N+ ++ N N ++N + + TQ++
Sbjct: 128 NNNNNNSNNNNNNNNSNLGINSSPTQSS 155
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear pore protein NUP100/NSP100)
Length = 959
Score = 41.2 bits (95), Expect = 0.004
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 12/161 (7%)
Frame = +1
Query: 205 GSTNQFPIQSQLFSSNSD--PQIFT-SNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFY 375
G +Q S LF N+ P FT SNT +G+ Q NQQ + A T S +
Sbjct: 348 GQNSQTSGSSGLFGQNNQKQPNTFTQSNTGIGLFGQNNNQQQQSTGLFGAKPAGTTGSLF 407
Query: 376 GFNNAYN-NQLTNTPILQANDSDFAQLPSSMFG--------FLNNSSANRLVNCSLSSLN 528
G N++ N L T + +++ +Q +S+FG F N +AN+ + +
Sbjct: 408 GGNSSTQPNSLFGTTNVPTSNTQ-SQQGNSLFGATKLTNMPFGGNPTANQSGSGNSLFGT 466
Query: 529 SITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNL 651
S T + NN + + N NN+ S S N L
Sbjct: 467 KPASTTGSLFGNNTASTTVPSTNGLFGNNANNSTSTTNTGL 507
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
Length = 719
Score = 41.2 bits (95), Expect = 0.004
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Frame = +1
Query: 241 FSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANT-NNSFYGFNNAYNNQLTNTP 417
F + S+ QI T+N+ ++S N V+ + +++NT N YG +N NTP
Sbjct: 380 FPAPSNSQIHTANSNNNVNSSRNNLNNRVNSGSSSNISNTAANHPYGAPE-FNMIANNTP 438
Query: 418 -ILQANDSDF-AQLPSSMFGFLN----NSSANRLVNCSLSSLNSITSG--TNTNVDNNDS 573
L N + F A P S LN NS + ++ S N+I N N++NN++
Sbjct: 439 AALTYNRAHFPAITPLSRQNSLNMAPSNSGSPIIIADHFSGNNNIAPNYRYNNNINNNNN 498
Query: 574 VEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMN 687
T N Y INN+ N N S ++ +N N
Sbjct: 499 NINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNNNHN 536
Score = 37.7 bits (86), Expect = 0.043
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Frame = +1
Query: 382 NNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVD 561
N YNN + N N+++ + ++ + NN + N N + S+ N+ + + N
Sbjct: 486 NYRYNNNINN------NNNNINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNNNHNNNH 539
Query: 562 NNDSVEITSTQNNYIINNSFGSKSYENQNLSK-LCDSKSNLMNYQIKASTLTWEDLA 729
+N S+ S NN NN+ + + N N+ C S K ST T+ + A
Sbjct: 540 HNGSINSNSNTNNNNNNNNGNNSNNCNSNIGMGGCGSNMPFRAGDWKCSTCTYHNFA 596
>sp|O00841|CUDA_DICDI Putative transcriptional regulator cudA
Length = 791
Score = 41.2 bits (95), Expect = 0.004
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Frame = +1
Query: 277 NTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLP 456
N I+ + Q Q QQ +++ N+ N NN+ NN NN N N+++
Sbjct: 359 NNIIQLIQQQQQQQQLLNNVTNN--INNNNNINNNNNNNNNNNNNNNNNNNNNNNN---- 412
Query: 457 SSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDNNDS-----VEITSTQ----NNYII 609
NN++ N + ++ + TS N N +NN+ V+I +T+ NN II
Sbjct: 413 -------NNNNNNNNTTSTTTTTTTTTSSCNNNNNNNNENTEHIVKIENTECNNNNNNII 465
Query: 610 NNS 618
NN+
Sbjct: 466 NNT 468
Score = 30.8 bits (68), Expect = 5.2
Identities = 39/165 (23%), Positives = 57/165 (34%), Gaps = 3/165 (1%)
Frame = +1
Query: 202 NGSTNQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGF 381
N S N I + + Q F +N G + NQQ H V H
Sbjct: 2 NQSQNFHNIDLGHYGAQGSNQSFNNNNN-GNNGMMMNQQQMQQHVVPHLHHLQQQQ---- 56
Query: 382 NNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVD 561
QL N P D++ P N N S S N I + N N +
Sbjct: 57 QQPQQQQLRNVP-------DYSNSP------------NGTTNGSTMSPNCINANNNNNNN 97
Query: 562 NNDSVEITSTQNNYIINNSFGSKSYENQN---LSKLCDSKSNLMN 687
N+++ + NN +N+ S + N + +L S +NL N
Sbjct: 98 NSNNNNSNNNNNNNNASNNLTSNKSSSTNTPQIGQLQASPANLTN 142
Score = 30.0 bits (66), Expect = 8.9
Identities = 31/141 (21%), Positives = 50/141 (35%)
Frame = +1
Query: 235 QLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNT 414
QL Q +N I++ ++ N++ N NN+ NN NN T
Sbjct: 363 QLIQQQQQQQQLLNNVTNNINNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT 422
Query: 415 PILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQ 594
+ SS N N + + I NT +NN++ I +T+
Sbjct: 423 STTTTTTT-------------TTSSCNNNNNNNNENTEHIVKIENTECNNNNNNIINNTE 469
Query: 595 NNYIINNSFGSKSYENQNLSK 657
N+ IN + E Q+ K
Sbjct: 470 NDENINKPILNSKDEFQSAFK 490
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
SWI1) (Transcription regulatory protein ADR6)
(Regulatory protein GAM3)
Length = 1314
Score = 40.4 bits (93), Expect = 0.007
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 9/179 (5%)
Frame = +1
Query: 229 QSQLFSSNSD--------PQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFN 384
Q QL+ N++ + T + I + S QN + + ++S N N F FN
Sbjct: 181 QQQLYGGNNNNNSTGIANDNVITPHFITNVQSISQNSSSSTPNTNSNSTPNANQQFLPFN 240
Query: 385 NAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDN 564
N+ +N L S+ ++N +A+ ++ S S+ N T+ N N
Sbjct: 241 NSASNN--------------GNLTSNQ--LISNYAASNSMDRSSSASNEFVPNTSDN--N 282
Query: 565 NDSVEITSTQNNYIINNSFGSKSYENQNLSKL-CDSKSNLMNYQIKASTLTWEDLANVA 738
N+S NN+ + N+ +K+ N N++ + + +N N A+T+ E A A
Sbjct: 283 NNS-------NNHNMRNNSNNKTSNNNNVTAVPAATPANTNNSTSNANTVFSERAAMFA 334
Score = 33.9 bits (76), Expect = 0.62
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Frame = +1
Query: 370 FYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTN 549
F+ NN NN T T N+++ NN++ N N + ++ N+ ++G +
Sbjct: 3 FFNLNNNNNNNNTTTTTTTTNNNN-----------TNNNNTNNNNNPANNTNNNNSTGHS 51
Query: 550 TNVDNNDSVEITSTQNNYI--INNSFGSKSYENQNLSKLCDSKSNLMN 687
+N +NN + T+T + + N F K ++ QNL DS +N N
Sbjct: 52 SNTNNNTNNNNTNTGASGVDDFQNFFDPKPFD-QNL----DSNNNNSN 94
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 40.4 bits (93), Expect = 0.007
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Frame = +1
Query: 202 NGSTNQFPIQSQLFSSNS---DPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSF 372
NG+ N + ++N+ + +I T+ T S N + S+ N++ N NN+
Sbjct: 403 NGNNNNNSNNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNN 462
Query: 373 YGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNT 552
NN NN N N++S+N N ++ N+ S +N
Sbjct: 463 NNNNNNNNNNNNNNN--------------------NSNSSNTNNNNINNTTNNNNSNSNN 502
Query: 553 NVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSK 657
N +NN+S +++ NN I NN+ + + N L+K
Sbjct: 503 NNNNNNSNSNSNSNNNNINNNNNNNNNNNNIYLTK 537
Score = 40.4 bits (93), Expect = 0.007
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +1
Query: 340 NHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDF---AQLPSSMFGFLNNSSANRLVNC 510
N++ +N NN+ N N ++T T + S + S+ NN++ N N
Sbjct: 406 NNNNSNNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNN 465
Query: 511 SLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLSKLCDSKSNLMN 687
+ ++ N+ + N+N N ++ I +T NN NNS + + N N + +S +N +N
Sbjct: 466 NNNNNNNNNNNNNSNSSNTNNNNINNTTNN---NNSNSNNNNNNNNSNSNSNSNNNNIN 521
Score = 37.4 bits (85), Expect = 0.056
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +1
Query: 340 NHSMANTNNSFYGFNNAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLS 519
N++ N NN+ G T+T N+++ ++ NN++ N N + +
Sbjct: 411 NNNNNNNNNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNNNNNNN 470
Query: 520 SLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFG---SKSYENQNLSKLCDSKSNLMN 687
+ N+ + +N++ NN+++ T+ NN NN+ S S N N + + ++ +N N
Sbjct: 471 NNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNNNNNNN 529
Score = 33.1 bits (74), Expect = 1.1
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Frame = +1
Query: 244 SSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFNNAYNNQLTNTPIL 423
++N+ T+N + + N ++ N+S +N+N++ NN NN N I
Sbjct: 475 NNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNSNSNSNSNNNNINNNNNNNNNNNNIY 534
Query: 424 QANDSDFAQLPSSMFGFL--NNSSANRLVNCSLSSLNSITS-----GTNTNVDNNDSVEI 582
S G L NNSS N N S S+ + +S +++ +
Sbjct: 535 LTKKPSIGSTDESSTGSLGGNNSSGNN--NSSSGSIGNNSSIIKQRSPPHSINGPLMLPP 592
Query: 583 TSTQNNYIINNSFGS 627
+ST NN I +S+ S
Sbjct: 593 SSTNNNNNIYSSYNS 607
>sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protein-tyrosine-phosphate
phosphohydrolase 3)
Length = 989
Score = 39.3 bits (90), Expect = 0.015
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 37/203 (18%)
Frame = +1
Query: 226 IQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSM---------ANTNNSFYG 378
I S + +S ++T N + I P S + N++ NTNN
Sbjct: 2 ISSSMSYRHSTNSVYTLNPHLNIPISTSTTIPPTSFYANNTPEMIQSQSENTNTNNINNS 61
Query: 379 FNNAYNNQLTNTPILQANDSDFAQLPSSMFGFL----------NNSSAN----------- 495
+N NN NTP + + + PS F L NN++ N
Sbjct: 62 SSNINNNN-NNTPDSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTTNNNNNNNNNNDD 120
Query: 496 -------RLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNNYIINNSFGSKSYENQNLS 654
+L N + N+ + N N +NN++ + NN NN+ + + N N +
Sbjct: 121 KFDTNALKLSNTMIIKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 180
Query: 655 KLCDSKSNLMNYQIKASTLTWED 723
++ SN N +I ++ +++
Sbjct: 181 NNNNNNSN-SNIEINVPSIQFDN 202
Score = 37.7 bits (86), Expect = 0.043
Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 18/191 (9%)
Frame = +1
Query: 115 QHHTKNRYKFQPTHRAWPITPEINVV---FQGNGSTNQFPIQSQLFSSNSDPQIFTSNTI 285
+H T + Y P H PI+ + F N + IQSQ ++N+ N I
Sbjct: 9 RHSTNSVYTLNP-HLNIPISTSTTIPPTSFYANNTPEM--IQSQSENTNT-------NNI 58
Query: 286 VGIHSQYQNQQPTVSHFVNHSMANTNNSFYGFN----NAYNNQLTNTPILQAN------- 432
S N ++ S + +++ FN N+ NN++ N N
Sbjct: 59 NNSSSNINNNNNNTPDSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTTNNNNNNNNNN 118
Query: 433 ----DSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTNVDNNDSVEITSTQNN 600
D++ +L ++M NN++ N N + ++ N+ + N N +NN++ + NN
Sbjct: 119 DDKFDTNALKLSNTMIIKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 178
Query: 601 YIINNSFGSKS 633
NN+ S S
Sbjct: 179 NNNNNNNNSNS 189
Score = 31.6 bits (70), Expect = 3.1
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Frame = +1
Query: 202 NGSTNQFPIQSQLFSSNSDPQIFTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYGF 381
NGST+ P Q+Q+ Q+ Q+Q Q + AN ++
Sbjct: 300 NGSTSSLPTQAQVQLQQMQQQM----------QQHQQHQ--------YKKANLSSLSTVV 341
Query: 382 NNAYNNQLTNTPI---LQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNT 552
+N NN NT Q N S F+ SS+F +NSS + + S S+ ++ TS +N+
Sbjct: 342 DNNLNNNPMNTSTSSPAQPNASPFSFSSSSLF---SNSSLSNSGSGSASTTSTSTSSSNS 398
Score = 31.2 bits (69), Expect = 4.0
Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +1
Query: 202 NGSTNQFPIQSQLFSSNSDPQI-FTSNTIVGIHSQYQNQQPTVSHFVNHSMANTNNSFYG 378
N + N S S +S P + F + I+++ N T N++ N NN+
Sbjct: 67 NNNNNTPDSMSMSTSLSSSPSVSFNHLDLNSINNKINNNTTT-----NNNNNNNNNNDDK 121
Query: 379 FN-NAYNNQLTNTPILQANDSDFAQLPSSMFGFLNNSSANRLVNCSLSSLNSITSGTNTN 555
F+ NA +L+NT I++ N+++ + NN++ N N + ++ N+ + N N
Sbjct: 122 FDTNAL--KLSNTMIIKNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNN 173
Query: 556 VDNNDSVEITSTQNNYIINNSFGSKSYENQ 645
+NN++ + +N I + S ++N+
Sbjct: 174 NNNNNNNNNNNNNSNSNIEINVPSIQFDNE 203
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,169,284
Number of Sequences: 369166
Number of extensions: 1710203
Number of successful extensions: 6058
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5176
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)