Planaria EST Database


DrC_01562

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01562
         (761 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09353|SENT_CAEEL  Probable sentrin-specific protease           31   4.2  
sp|Q9GHE4|MATK_ALICA  Maturase K (Intron maturase)                 30   5.4  
sp|Q99Y97|ACPS_STRP1  Holo-[acyl-carrier-protein] synthase (...    30   9.3  
sp|Q52TG1|MATK_CALOL  Maturase K (Intron maturase)                 30   9.3  
>sp|Q09353|SENT_CAEEL Probable sentrin-specific protease
          Length = 697

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
 Frame = +3

Query: 66  LFAIDKAISQNPHNYNWLFVKADLAIAEADFFK-----------AMRNYLEAGAAATEFF 212
           +FA D  +       +W     D+   + +F+            A+R YLEA     E  
Sbjct: 570 IFAFDIVLVPVHLGMHWCMAVIDMGEKKIEFYDSLYDGNTAVLPALRGYLEA-----ESL 624

Query: 213 TKPITKDIYTDWVLQQMIRCCREMGYHHQAIFLCQY 320
            K  T   ++ W +QQM    R+       +F CQ+
Sbjct: 625 DKKKTAMNFSGWTIQQMTDIPRQQNGSDCGVFSCQF 660
>sp|Q9GHE4|MATK_ALICA Maturase K (Intron maturase)
          Length = 512

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
 Frame = +3

Query: 219 PITKDIYTDW----VLQQMIRCCREMGYHH------QAIFLCQYIPEINIAAQMA 353
           PI+K I+TD     ++ + +R CR + ++H      Q+++  +YI  ++ A  +A
Sbjct: 392 PISKPIWTDLSDSDIIDRFVRICRNLSHYHSGSSKKQSLYRMKYILRLSCARTLA 446
>sp|Q99Y97|ACPS_STRP1 Holo-[acyl-carrier-protein] synthase (Holo-ACP synthase)
           (4'-phosphopantetheinyl transferase acpS)
          Length = 118

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 72  AIDKAISQNPHNYNWLFVKADLAIAEADFFKAMRNYLEAGAAATEFFTKPI 224
           AI+K   +NP     +  + +LAI E+  +K   NYL    +  E F K I
Sbjct: 14  AIEKVYQRNPRFAQKILTEQELAIFESFPYKRRLNYLAGRWSGKEAFAKAI 64
>sp|Q52TG1|MATK_CALOL Maturase K (Intron maturase)
          Length = 549

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +3

Query: 213 TKPITKDIYTDWVLQQMIRCCREMGYHH------QAIFLCQYIPEINIAAQMA 353
           +KPI  D+    ++ + +R CR + ++H      Q+++  +YI  ++ A  +A
Sbjct: 394 SKPIWTDLSDSDIIDRFVRICRTLSHYHSGSSKKQSLYRMKYILRLSCARTLA 446
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,942,422
Number of Sequences: 369166
Number of extensions: 1769637
Number of successful extensions: 3858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3858
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)