Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A01
(761 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09353|SENT_CAEEL Probable sentrin-specific protease 31 4.2
sp|Q9GHE4|MATK_ALICA Maturase K (Intron maturase) 30 5.4
sp|Q99Y97|ACPS_STRP1 Holo-[acyl-carrier-protein] synthase (... 30 9.3
sp|Q52TG1|MATK_CALOL Maturase K (Intron maturase) 30 9.3
>sp|Q09353|SENT_CAEEL Probable sentrin-specific protease
Length = 697
Score = 30.8 bits (68), Expect = 4.2
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Frame = +3
Query: 66 LFAIDKAISQNPHNYNWLFVKADLAIAEADFFK-----------AMRNYLEAGAAATEFF 212
+FA D + +W D+ + +F+ A+R YLEA E
Sbjct: 570 IFAFDIVLVPVHLGMHWCMAVIDMGEKKIEFYDSLYDGNTAVLPALRGYLEA-----ESL 624
Query: 213 TKPITKDIYTDWVLQQMIRCCREMGYHHQAIFLCQY 320
K T ++ W +QQM R+ +F CQ+
Sbjct: 625 DKKKTAMNFSGWTIQQMTDIPRQQNGSDCGVFSCQF 660
>sp|Q9GHE4|MATK_ALICA Maturase K (Intron maturase)
Length = 512
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Frame = +3
Query: 219 PITKDIYTDW----VLQQMIRCCREMGYHH------QAIFLCQYIPEINIAAQMA 353
PI+K I+TD ++ + +R CR + ++H Q+++ +YI ++ A +A
Sbjct: 392 PISKPIWTDLSDSDIIDRFVRICRNLSHYHSGSSKKQSLYRMKYILRLSCARTLA 446
>sp|Q99Y97|ACPS_STRP1 Holo-[acyl-carrier-protein] synthase (Holo-ACP synthase)
(4'-phosphopantetheinyl transferase acpS)
Length = 118
Score = 29.6 bits (65), Expect = 9.3
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +3
Query: 72 AIDKAISQNPHNYNWLFVKADLAIAEADFFKAMRNYLEAGAAATEFFTKPI 224
AI+K +NP + + +LAI E+ +K NYL + E F K I
Sbjct: 14 AIEKVYQRNPRFAQKILTEQELAIFESFPYKRRLNYLAGRWSGKEAFAKAI 64
>sp|Q52TG1|MATK_CALOL Maturase K (Intron maturase)
Length = 549
Score = 29.6 bits (65), Expect = 9.3
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +3
Query: 213 TKPITKDIYTDWVLQQMIRCCREMGYHH------QAIFLCQYIPEINIAAQMA 353
+KPI D+ ++ + +R CR + ++H Q+++ +YI ++ A +A
Sbjct: 394 SKPIWTDLSDSDIIDRFVRICRTLSHYHSGSSKKQSLYRMKYILRLSCARTLA 446
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,942,422
Number of Sequences: 369166
Number of extensions: 1769637
Number of successful extensions: 3858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3858
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)