Planaria EST Database


DrC_01558

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01558
         (582 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q757M7|SIR2_ASHGO  NAD-dependent histone deacetylase SIR2...    32   1.5  
sp|Q9NQX6|ZN331_HUMAN  Zinc finger protein 331 (Zinc finger ...    29   7.4  
sp|Q6JLC9|ZN331_CANFA  Zinc finger protein 331                     29   7.4  
sp|P17037|ZNF29_HUMAN  Zinc finger protein 29 (Zinc finger p...    29   7.4  
sp|P18739|ZO10_XENLA  Oocyte zinc finger protein XLCOF10           29   7.4  
sp|P25247|POL2_TORVR  RNA2 polyprotein (P2) [Contains: X3 pr...    29   9.7  
sp|Q9Z1D7|ZNF96_MOUSE  Zinc finger protein 96 (Zfp-96)             29   9.7  
sp|Q8ZHI2|Y911_YERPE  Hypothetical UPF0149 protein YPO0911/y...    29   9.7  
sp|Q8R7U7|RPOC_THETN  DNA-directed RNA polymerase beta' chai...    29   9.7  
>sp|Q757M7|SIR2_ASHGO NAD-dependent histone deacetylase SIR2 (Regulatory protein SIR2)
           (Silent information regulator 2)
          Length = 559

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -2

Query: 290 GDRNGDVLSHSS*QLLHDTFLHSIITPDHVLPITASPFSFKIPHRRIVLH----LFIITS 123
           G +NG   SH+S  + H +    +I PD      A P  F    R+ VL     + I TS
Sbjct: 401 GTKNGQQSSHNSSSIFHMSRSFGVIKPDITFFGEALPLEFHTNIRQDVLQCDLLICIGTS 460

Query: 122 YKVAPAA 102
            KVAP +
Sbjct: 461 LKVAPVS 467
>sp|Q9NQX6|ZN331_HUMAN Zinc finger protein 331 (Zinc finger protein 463) (C2H2-like zinc
           finger protein rearranged in thyroid adenomas)
          Length = 463

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 403 KPFSCRDCFVAFKLGSSVFI 344
           KP+ C+DC  AF+ GSS+ I
Sbjct: 185 KPYECKDCGKAFRWGSSLVI 204
>sp|Q6JLC9|ZN331_CANFA Zinc finger protein 331
          Length = 490

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 403 KPFSCRDCFVAFKLGSSVFI 344
           KP+ C+DC  AF+ GSS+ I
Sbjct: 186 KPYECKDCGKAFRWGSSLVI 205
>sp|P17037|ZNF29_HUMAN Zinc finger protein 29 (Zinc finger protein KOX26)
          Length = 56

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 469 GEVSSSSLSDTDHLMGTMVLNLKPFSCRDCFVAFKLGSSVFIIAAHQHTYS 317
           GE  S S + T H+   +    KP++C+DC  AF   SS   +  HQ  ++
Sbjct: 7   GEAFSQSSTLTKHIK--VYTGEKPYTCKDCRKAFSQSSS---LTQHQRVHT 52
>sp|P18739|ZO10_XENLA Oocyte zinc finger protein XLCOF10
          Length = 214

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 403 KPFSCRDCFVAFKLGSSVFIIAAHQHTYS**YISTLSGEIATEMSYRTPRDNC 245
           KPFSC DC   FK   S+FI     HT    +  ++  +  T  S+ T  + C
Sbjct: 139 KPFSCSDCGKCFK-RHSLFIEHQRIHTGEDTFSCSVCEKTFTRRSHLTAHEKC 190
>sp|P25247|POL2_TORVR RNA2 polyprotein (P2) [Contains: X3 protein; X4 protein; Movement
           protein (MP); Coat protein (CP)]
          Length = 1882

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 29  CLDGDIGEWSWDE 67
           CLDG++GEW W E
Sbjct: 828 CLDGNMGEWEWRE 840
>sp|Q9Z1D7|ZNF96_MOUSE Zinc finger protein 96 (Zfp-96)
          Length = 501

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 403 KPFSCRDCFVAFKLGSSVFIIAAHQHTYS**YISTLSGEIATEMSY 266
           KP+ C DC  AF   SS   +A HQ T+      T SG I  + ++
Sbjct: 407 KPYECNDCGKAFVYNSS---LATHQETHHKEKPFTQSGPIQQQRNH 449
>sp|Q8ZHI2|Y911_YERPE Hypothetical UPF0149 protein YPO0911/y3298/YP3608
          Length = 192

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 372 ATKQSLQEKGFRFNTIVPIKWSVSLRDEEDTSPRWI 479
           AT+++L+ +GF F  ++P    V++ D  D    W+
Sbjct: 74  ATQEALENEGFMFQLLIPEGEDVTVFDRADALSGWV 109
>sp|Q8R7U7|RPOC_THETN DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1183

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 13/48 (27%), Positives = 29/48 (60%)
 Frame = +3

Query: 393 EKGFRFNTIVPIKWSVSLRDEEDTSPRWIQKEELR*KDQIIKRLTDKL 536
           + G+    +V +   V +R+E+  +   I  EE+R  ++II++L+D++
Sbjct: 772 DSGYLTRRLVDVSQDVIVREEDCGTDEGIYVEEIREGNEIIEKLSDRI 819
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,701,515
Number of Sequences: 369166
Number of extensions: 1505237
Number of successful extensions: 3959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3955
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)