Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_P17
(582 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q757M7|SIR2_ASHGO NAD-dependent histone deacetylase SIR2... 32 1.5
sp|Q9NQX6|ZN331_HUMAN Zinc finger protein 331 (Zinc finger ... 29 7.4
sp|Q6JLC9|ZN331_CANFA Zinc finger protein 331 29 7.4
sp|P17037|ZNF29_HUMAN Zinc finger protein 29 (Zinc finger p... 29 7.4
sp|P18739|ZO10_XENLA Oocyte zinc finger protein XLCOF10 29 7.4
sp|P25247|POL2_TORVR RNA2 polyprotein (P2) [Contains: X3 pr... 29 9.7
sp|Q9Z1D7|ZNF96_MOUSE Zinc finger protein 96 (Zfp-96) 29 9.7
sp|Q8ZHI2|Y911_YERPE Hypothetical UPF0149 protein YPO0911/y... 29 9.7
sp|Q8R7U7|RPOC_THETN DNA-directed RNA polymerase beta' chai... 29 9.7
>sp|Q757M7|SIR2_ASHGO NAD-dependent histone deacetylase SIR2 (Regulatory protein SIR2)
(Silent information regulator 2)
Length = 559
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = -2
Query: 290 GDRNGDVLSHSS*QLLHDTFLHSIITPDHVLPITASPFSFKIPHRRIVLH----LFIITS 123
G +NG SH+S + H + +I PD A P F R+ VL + I TS
Sbjct: 401 GTKNGQQSSHNSSSIFHMSRSFGVIKPDITFFGEALPLEFHTNIRQDVLQCDLLICIGTS 460
Query: 122 YKVAPAA 102
KVAP +
Sbjct: 461 LKVAPVS 467
>sp|Q9NQX6|ZN331_HUMAN Zinc finger protein 331 (Zinc finger protein 463) (C2H2-like zinc
finger protein rearranged in thyroid adenomas)
Length = 463
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 403 KPFSCRDCFVAFKLGSSVFI 344
KP+ C+DC AF+ GSS+ I
Sbjct: 185 KPYECKDCGKAFRWGSSLVI 204
>sp|Q6JLC9|ZN331_CANFA Zinc finger protein 331
Length = 490
Score = 29.3 bits (64), Expect = 7.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 403 KPFSCRDCFVAFKLGSSVFI 344
KP+ C+DC AF+ GSS+ I
Sbjct: 186 KPYECKDCGKAFRWGSSLVI 205
>sp|P17037|ZNF29_HUMAN Zinc finger protein 29 (Zinc finger protein KOX26)
Length = 56
Score = 29.3 bits (64), Expect = 7.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 469 GEVSSSSLSDTDHLMGTMVLNLKPFSCRDCFVAFKLGSSVFIIAAHQHTYS 317
GE S S + T H+ + KP++C+DC AF SS + HQ ++
Sbjct: 7 GEAFSQSSTLTKHIK--VYTGEKPYTCKDCRKAFSQSSS---LTQHQRVHT 52
>sp|P18739|ZO10_XENLA Oocyte zinc finger protein XLCOF10
Length = 214
Score = 29.3 bits (64), Expect = 7.4
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 403 KPFSCRDCFVAFKLGSSVFIIAAHQHTYS**YISTLSGEIATEMSYRTPRDNC 245
KPFSC DC FK S+FI HT + ++ + T S+ T + C
Sbjct: 139 KPFSCSDCGKCFK-RHSLFIEHQRIHTGEDTFSCSVCEKTFTRRSHLTAHEKC 190
>sp|P25247|POL2_TORVR RNA2 polyprotein (P2) [Contains: X3 protein; X4 protein; Movement
protein (MP); Coat protein (CP)]
Length = 1882
Score = 28.9 bits (63), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 29 CLDGDIGEWSWDE 67
CLDG++GEW W E
Sbjct: 828 CLDGNMGEWEWRE 840
>sp|Q9Z1D7|ZNF96_MOUSE Zinc finger protein 96 (Zfp-96)
Length = 501
Score = 28.9 bits (63), Expect = 9.7
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 403 KPFSCRDCFVAFKLGSSVFIIAAHQHTYS**YISTLSGEIATEMSY 266
KP+ C DC AF SS +A HQ T+ T SG I + ++
Sbjct: 407 KPYECNDCGKAFVYNSS---LATHQETHHKEKPFTQSGPIQQQRNH 449
>sp|Q8ZHI2|Y911_YERPE Hypothetical UPF0149 protein YPO0911/y3298/YP3608
Length = 192
Score = 28.9 bits (63), Expect = 9.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 372 ATKQSLQEKGFRFNTIVPIKWSVSLRDEEDTSPRWI 479
AT+++L+ +GF F ++P V++ D D W+
Sbjct: 74 ATQEALENEGFMFQLLIPEGEDVTVFDRADALSGWV 109
>sp|Q8R7U7|RPOC_THETN DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1183
Score = 28.9 bits (63), Expect = 9.7
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +3
Query: 393 EKGFRFNTIVPIKWSVSLRDEEDTSPRWIQKEELR*KDQIIKRLTDKL 536
+ G+ +V + V +R+E+ + I EE+R ++II++L+D++
Sbjct: 772 DSGYLTRRLVDVSQDVIVREEDCGTDEGIYVEEIREGNEIIEKLSDRI 819
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,701,515
Number of Sequences: 369166
Number of extensions: 1505237
Number of successful extensions: 3959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3955
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)