Planaria EST Database


DrC_01553

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01553
         (805 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11833|TBB_PARLI  Tubulin beta chain (Beta tubulin)            494   e-139
sp|P30883|TBB4_XENLA  Tubulin beta-4 chain                        494   e-139
sp|P68372|TBBX_MOUSE  Tubulin beta-? chain >gi|55977480|sp|P...   493   e-139
sp|P02554|TBB_PIG  Tubulin beta chain                             492   e-139
sp|Q7JJU6|TBB2_PANTR  Tubulin beta-2 chain >gi|56754798|sp|P...   491   e-139
sp|Q24560|TBB1_DROME  Tubulin beta-1 chain (Beta-1 tubulin)       491   e-138
sp|Q91240|TBB_PSEAM  Tubulin beta chain (Beta tubulin)            491   e-138
sp|P13602|TBB2_XENLA  Tubulin beta-2 chain (Beta-2 tubulin)       490   e-138
sp|P04691|TBB1_RAT  Tubulin beta chain (T beta-15)                490   e-138
sp|P32882|TBB2_CHICK  Tubulin beta-2 chain (Beta-tubulin cla...   490   e-138
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
          Length = 447

 Score =  494 bits (1271), Expect = e-139
 Identities = 240/267 (89%), Positives = 248/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRAVL+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKEAESCDCLQGFQ                   KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVD 327
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
          Length = 445

 Score =  494 bits (1271), Expect = e-139
 Identities = 240/267 (89%), Positives = 248/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRAVL+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKEAESCDCLQGFQ                   KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVD 327
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
 sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
          Length = 445

 Score =  493 bits (1270), Expect = e-139
 Identities = 240/267 (89%), Positives = 248/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRAVL+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKEAESCDCLQGFQ                   KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVD 327
>sp|P02554|TBB_PIG Tubulin beta chain
          Length = 445

 Score =  492 bits (1266), Expect = e-139
 Identities = 238/267 (89%), Positives = 248/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRA+L+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVD 327
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
 sp|P69895|TBB2_MACMU Tubulin beta-2 chain
 sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
 sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
 sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
 sp|P69897|TBB5_RAT Tubulin beta-5 chain
 sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
           tubulin)
          Length = 444

 Score =  491 bits (1265), Expect = e-139
 Identities = 238/267 (89%), Positives = 248/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRA+L+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKEAESCDCLQGFQ                   KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQ+FDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAVFRGRMSMKEVD 327
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
          Length = 447

 Score =  491 bits (1263), Expect = e-138
 Identities = 238/267 (89%), Positives = 247/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRAVL+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKEAESCDCLQGFQ                   KIREEYPDRIMNT+SVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVS TMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVD 327
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
          Length = 445

 Score =  491 bits (1263), Expect = e-138
 Identities = 239/267 (89%), Positives = 247/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRAVL+DLEPGTMDSVR+G FGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAVLVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKEAESCDCLQGFQ                   KIREEYPDRIMNTFSVVPSPKVSDTVV
Sbjct: 121 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFDAKNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVD 327
>sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin)
          Length = 443

 Score =  490 bits (1261), Expect = e-138
 Identities = 236/267 (88%), Positives = 248/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRA+L+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVD 327
>sp|P04691|TBB1_RAT Tubulin beta chain (T beta-15)
          Length = 445

 Score =  490 bits (1261), Expect = e-138
 Identities = 236/267 (88%), Positives = 248/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRA+L+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVD 327
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
          Length = 445

 Score =  490 bits (1261), Expect = e-138
 Identities = 236/267 (88%), Positives = 248/267 (92%)
 Frame = +3

Query: 3   PRAVLIDLEPGTMDSVRAGPFGQLYRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDIV 182
           PRA+L+DLEPGTMDSVR+GPFGQ++RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD+V
Sbjct: 61  PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 120

Query: 183 RKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVV 362
           RKE+ESCDCLQGFQ                   KIREEYPDRIMNTFSV+PSPKVSDTVV
Sbjct: 121 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV 180

Query: 363 EPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 542
           EPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
Sbjct: 181 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL 240

Query: 543 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMM 722
           RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS+QYRALTVPELTQQMFD+KNMM
Sbjct: 241 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300

Query: 723 AACDPRHGRYLTVAALFRGRMSMKEVD 803
           AACDPRHGRYLTVAA+FRGRMSMKEVD
Sbjct: 301 AACDPRHGRYLTVAAIFRGRMSMKEVD 327
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,964,041
Number of Sequences: 369166
Number of extensions: 1779030
Number of successful extensions: 5330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4899
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)