Planaria EST Database


DrC_01548

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01548
         (884 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BYM8|UB7I3_HUMAN  Ubiquitin-conjugating enzyme 7-intera...   151   3e-36
sp|Q9WUB0|UB7I3_MOUSE  Ubiquitin-conjugating enzyme 7-intera...   150   3e-36
sp|Q62921|UB7I3_RAT  Ubiquitin-conjugating enzyme 7-interact...   148   2e-35
sp|Q6ZMZ0|IBR3_HUMAN  IBR domain containing protein 3              51   5e-06
sp|O76924|ARI2_DROME  Ariadne-2 protein (Ari-2)                    49   2e-05
sp|Q9NWF9|UB7I1_HUMAN  E3 ubiquitin ligase TRIAD3 (Ubiquitin...    47   9e-05
sp|P36113|YKZ7_YEAST  Hypothetical 63.6 kDa protein in YPT52...    46   2e-04
sp|P58283|UB7I1_MOUSE  E3 ubiquitin ligase TRIAD3 (Ubiquitin...    45   3e-04
sp|Q9JI90|RNF14_MOUSE  RING finger protein 14 (Androgen rece...    45   3e-04
sp|Q9UBS8|RNF14_HUMAN  RING finger protein 14 (Androgen rece...    45   4e-04
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
           virus X-associated protein 4) (HBV-associated factor 4)
           (RING finger protein 54)
          Length = 500

 Score =  151 bits (381), Expect = 3e-36
 Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 15/226 (6%)
 Frame = +2

Query: 14  CNLCCLVICKGEGVKLQNCGDLICKSCLLNSIETTTKIPAQCP------SCQQSINDREI 175
           C +C  V+  GE V L+ C    C+ CL  +I  + +    CP      SC   + +REI
Sbjct: 272 CPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREI 331

Query: 176 RAILSDHQFSIY-QVKCQGFSKKSIPHFQCQTPNCDAFYEISESLKEFTXXXXXXXXXXX 352
           +A+L+   +  +  +       +S   + C+TP+C  +    + + EFT           
Sbjct: 332 KALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLL 391

Query: 353 XXTVHLNENCEQFKK----RMETDVNMKAIEEKIK----NKELMKCPKCGNLLMKISGCN 508
              +H   NC+++++    R + DV  +   E +K      E M+CP+C  ++ K  GC+
Sbjct: 392 CKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCD 451

Query: 509 WIQCTNCLTELCWIRQMERWGPGGRDDISGGCRCMVGGVPCDPLCK 646
           WI+CT C TE+CW+ +  RWGPGG  D SGGCRC V G+PC P C+
Sbjct: 452 WIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ 497
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
           (UbcM4-interacting protein 28)
          Length = 498

 Score =  150 bits (380), Expect = 3e-36
 Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 15/226 (6%)
 Frame = +2

Query: 14  CNLCCLVICKGEGVKLQNCGDLICKSCLLNSIETTTKIPAQCP------SCQQSINDREI 175
           C +C  V+  GE V L+ C    C+ CL  +I  + +    CP      SC   + +REI
Sbjct: 270 CPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVACPFIDSTYSCPGKLLEREI 329

Query: 176 RAILSDHQFSIY-QVKCQGFSKKSIPHFQCQTPNCDAFYEISESLKEFTXXXXXXXXXXX 352
           RA+LS   +  +  +       +S   + C+TP+C  +    + + EFT           
Sbjct: 330 RALLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLL 389

Query: 353 XXTVHLNENCEQFKK----RMETDVNMKAIEEKIK----NKELMKCPKCGNLLMKISGCN 508
              +H + NC +++     R + DV  +   E +K      E M CP+C  ++ K  GC+
Sbjct: 390 CKAIHEHMNCREYQDDLALRAQNDVAARQTTEMLKVMLQQGEAMHCPQCRIVVQKKDGCD 449

Query: 509 WIQCTNCLTELCWIRQMERWGPGGRDDISGGCRCMVGGVPCDPLCK 646
           WI+CT C TE+CW+ +  RWGPGG  D SGGCRC V G+PC P C+
Sbjct: 450 WIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ 495
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
           interacting with PKC) (Protein kinase C-binding protein
           beta-15)
          Length = 498

 Score =  148 bits (373), Expect = 2e-35
 Identities = 74/226 (32%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
 Frame = +2

Query: 14  CNLCCLVICKGEGVKLQNCGDLICKSCLLNSIETTTKIPAQCP------SCQQSINDREI 175
           C +C  V+  GE V L+ C    C+ CL  +I  + +    CP      SC   + +REI
Sbjct: 270 CPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCPGKLLEREI 329

Query: 176 RAILSDHQFSIY-QVKCQGFSKKSIPHFQCQTPNCDAFYEISESLKEFTXXXXXXXXXXX 352
           RA+LS   +  +  +       +S   + C+TP+C  +    + + EFT           
Sbjct: 330 RALLSPEDYQRFLDLGVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLL 389

Query: 353 XXTVHLNENCEQFKK----RMETDVNMKAIEEKIK----NKELMKCPKCGNLLMKISGCN 508
              +H   NC +++     R   DV  +   E ++      E M CP+C  ++ K  GC+
Sbjct: 390 CKAIHERMNCREYQDDLAHRARNDVAAQQTTEMLRVMLQQGEAMYCPQCRIVVQKKDGCD 449

Query: 509 WIQCTNCLTELCWIRQMERWGPGGRDDISGGCRCMVGGVPCDPLCK 646
           WI+CT C TE+CW+ +  RWGPGG  D SGGCRC V G+PC P C+
Sbjct: 450 WIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ 495
>sp|Q6ZMZ0|IBR3_HUMAN IBR domain containing protein 3
          Length = 486

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 38/209 (18%), Positives = 81/209 (38%), Gaps = 36/209 (17%)
 Frame = +2

Query: 44  GEGVKLQNCGDLICKSCLLNSIE---TTTKIPAQCPSCQQSINDREIRAILSD----HQF 202
           G   +L +C    C+ CL + +    + +++P  CP C + +N  +IR +L+D    H++
Sbjct: 28  GRRRRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLADPPLMHKY 87

Query: 203 SIYQVK--------CQ------------GFSKKSIPHFQCQTPNCDAFYEISESLKEFTX 322
             + ++        C+             +   S P   C+   C    E     K+   
Sbjct: 88  EEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQT--EFCYHCKQIW- 144

Query: 323 XXXXXXXXXXXXTVHLNENCEQFKKRMETDVNMK-------AIEEKIKNKELMKCPKCGN 481
                         H N+ C+  +++    + ++       +  ++    ++  CP+C  
Sbjct: 145 --------------HPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPDDIKPCPRCSA 190

Query: 482 LLMKIS--GCNWIQCTNCLTELCWIRQME 562
            ++K++   CN + C  C  E CW+   E
Sbjct: 191 YIIKMNDGSCNHMTCAVCGCEFCWLCMKE 219
>sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2)
          Length = 509

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 13/174 (7%)
 Frame = +2

Query: 68  CGDLICKSCLLNSIET------TTKIPAQCPSCQQSINDREIRAILSDHQFSIYQVKCQG 229
           CG   CK C     ET      +T+I      C   + +  +  +++     + + K Q 
Sbjct: 170 CGHSFCKDCWTIYFETQIFQGISTQIGCMAQMCNVRVPEDLVLTLVTR---PVMRDKYQQ 226

Query: 230 FS----KKSIPHFQ-CQTPNCDAFYEISE--SLKEFTXXXXXXXXXXXXXTVHLNENCEQ 388
           F+     KS P  + C  PNC    + SE  + +                  H   +C+ 
Sbjct: 227 FAFKDYVKSHPELRFCPGPNCQIIVQSSEISAKRAICKACHTGFCFRCGMDYHAPTDCQV 286

Query: 389 FKKRMETDVNMKAIEEKIKNKELMKCPKCGNLLMKISGCNWIQCTNCLTELCWI 550
            KK +    +       I +     CPKC   + K  GCN +QC NC  + CW+
Sbjct: 287 IKKWLTKCADDSETANYI-SAHTKDCPKCHICIEKNGGCNHMQCFNCKHDFCWM 339
>sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin conjugating enzyme 7
            interacting protein 1) (Zinc finger protein inhibiting
            NF-kappa-B)
          Length = 866

 Score = 46.6 bits (109), Expect = 9e-05
 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 15/180 (8%)
 Frame = +2

Query: 56   KLQNCGD--LICKSCLLNSIETTT----KIPAQCP--SCQQSINDREIRAILSDH-QFSI 208
            +L  C D  L CK CL+   +       K+   C   SC  S    E+  +L     +  
Sbjct: 526  ELTQCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKY 585

Query: 209  YQVKCQGFSKKSIPHFQCQTPNCDAFYEISESLKEFTXXXXXXXXXXXXXTV-----HLN 373
            Y+ K +     +      + P+C     +   +K F+                    H  
Sbjct: 586  YERKAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNG 645

Query: 374  ENCEQFKKRMETDVNMK-AIEEKIKNKELMKCPKCGNLLMKISGCNWIQCTNCLTELCWI 550
              CE+  ++   D+  + +IEEK+    + KC KCG  L+K  GCN + C  C  ++C++
Sbjct: 646  LTCEELAEK--DDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSC-RCGAQMCYL 702
>sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52-GCN3 intergenic region
          Length = 551

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 18/211 (8%)
 Frame = +2

Query: 8   FTCNLCCLVICKGEGVKLQNCGDLICKSCLLNSIETTTKIP--AQCPSCQQSINDREIRA 181
           FTC +CC    K        CG   C +C  + I+          C  C  ++ + +I  
Sbjct: 177 FTCIICCDK--KDTETFALECGHEYCINCYRHYIKDKLHEGNIITCMDCSLALKNEDIDK 234

Query: 182 ILSDHQFS-IYQVKCQGFSKKSIPHFQ-CQTPNCDAFYEISE--SLKEFTXXXXXXXXXX 349
           ++     S +     + F +K   +++ C   +C +   + +  SL E+T          
Sbjct: 235 VMGHPSSSKLMDSSIKSFVQKHNRNYKWCPFADCKSIVHLRDTSSLPEYTRLHYSPFVKC 294

Query: 350 XXX---------TVHLNENCEQFKKRMETDVNMKAIEEKIKNKELM---KCPKCGNLLMK 493
                        VH   +C    K     V     E +I N  L    +CPKC   + K
Sbjct: 295 NSFHRFCFNCGFEVHSPADC----KITTAWVKKARKESEILNWVLSHTKECPKCSVNIEK 350

Query: 494 ISGCNWIQCTNCLTELCWIRQMERWGPGGRD 586
             GCN + C++C  E CWI +   W P G++
Sbjct: 351 NGGCNHMVCSSCKYEFCWICE-GPWAPHGKN 380
>sp|P58283|UB7I1_MOUSE E3 ubiquitin ligase TRIAD3 (Ubiquitin-conjugating enzyme
            7-interacting protein 1) (UbcM4-interacting protein 83)
          Length = 853

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 15/180 (8%)
 Frame = +2

Query: 56   KLQNCGD--LICKSCLLNSIETTT----KIPAQCP--SCQQSINDREIRAILSDH-QFSI 208
            +L  C D  L CK CL+   +       K    C   SC  S    E+  +L     +  
Sbjct: 514  ELTQCADAHLFCKECLIRYAQEAVFGSGKSELSCMEGSCTCSFPTSELEKVLPQTILYKY 573

Query: 209  YQVKCQGFSKKSIPHFQCQTPNCDAFYEISESLKEFTXXXXXXXXXXXXXTV-----HLN 373
            Y+ K +     +      + P+C     +   +K F+                    H  
Sbjct: 574  YERKAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPRCRKETCRKCQGLWKEHNG 633

Query: 374  ENCEQFKKRMETDVNMK-AIEEKIKNKELMKCPKCGNLLMKISGCNWIQCTNCLTELCWI 550
              CE+  ++   D+  + +IEEK+    + KC KCG  L+K  GCN + C  C  ++C++
Sbjct: 634  LTCEELAEK--DDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSC-RCGAQMCYL 690
>sp|Q9JI90|RNF14_MOUSE RING finger protein 14 (Androgen receptor-associated protein 54)
           (Triad2 protein)
          Length = 485

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 392 KKRMETDVNMKAIEEKIKNKELMK----CPKCGNLLMKISGCNWIQCTNCLTELCWI 550
           ++R    V  KA+EE      L K    CP CG  + K+ GCN + CT C+   CWI
Sbjct: 377 EQRYGKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNKMTCTGCMQYFCWI 433
>sp|Q9UBS8|RNF14_HUMAN RING finger protein 14 (Androgen receptor-associated protein 54)
           (Triad2 protein) (HFB30)
          Length = 474

 Score = 44.7 bits (104), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +2

Query: 413 VNMKAIEEKIKNKELMK----CPKCGNLLMKISGCNWIQCTNCLTELCWI 550
           V  KA+EE    + L K    CP CG  + K+ GCN + CT C+   CWI
Sbjct: 383 VIQKALEEMESKEWLEKNSKSCPCCGTPIEKLDGCNKMTCTGCMQYFCWI 432
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,925,597
Number of Sequences: 369166
Number of extensions: 2076158
Number of successful extensions: 6846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6816
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)