Planaria EST Database


DrC_01546

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01546
         (657 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9N4M4|ANC1_CAEEL  Nuclear anchorage protein 1 (Anchorage...    36   0.077
sp|P25980|UBF1B_XENLA  Nucleolar transcription factor 1-B (U...    35   0.17 
sp|P32773|TOA1_YEAST  Transcription initiation factor IIA la...    34   0.38 
sp|P36044|MNN4_YEAST  Protein MNN4                                 34   0.38 
sp|P24788|CD2L1_MOUSE  PITSLRE serine/threonine-protein kina...    33   0.50 
sp|P46916|YTXO_BACSU  Hypothetical protein ytxO (ORFY)             33   0.50 
sp|Q6FSW2|RAD52_CANGA  DNA repair and recombination protein ...    33   0.65 
sp|Q6DRL5|MBB1A_BRARE  Myb-binding protein 1A-like protein         33   0.85 
sp|P13469|MODU_DROME  DNA-binding protein modulo                   32   1.1  
sp|Q960E8|TF2H1_DROME  TFIIH basal transcription factor comp...    32   1.1  
>sp|Q9N4M4|ANC1_CAEEL Nuclear anchorage protein 1 (Anchorage 1 protein) (Nesprin homolog)
          Length = 8545

 Score = 36.2 bits (82), Expect = 0.077
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 104  TVENITPVTEEKNNLKEVIEKKTVDSENVDNDEPETKK--QRLSDLNDIKDSEEKAQNGD 277
            T+E +TP+ EE   L + IEKK  +   V  ++P  +   Q+L D+  I + EE   N D
Sbjct: 2046 TIETVTPILEEYTTLVDNIEKKLANEIEVPTNDPSRQDLVQQLQDV--ILECEEVVVNCD 2103

Query: 278  DAEE 289
            + E+
Sbjct: 2104 NIEK 2107
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (Upstream binding factor 1-B)
           (UBF-1-B) (xUBF-2)
          Length = 701

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 24/114 (21%), Positives = 52/114 (45%)
 Frame = +2

Query: 110 ENITPVTEEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEE 289
           ++ T +    +  K VI+ K+ D E+ ++DE E       D +D +D E+ +++GD ++ 
Sbjct: 594 KSTTKIQAPSSKSKLVIQSKSDDDEDDEDDEDEED----DDDDDDEDKEDSSEDGDSSDS 649

Query: 290 DQXXXXXXXXXXXXXXXXXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENEVN 451
                                 E   E+   + + +GSS+  + + DS++++ N
Sbjct: 650 SSDEDSEEGEENEDEEDEEDDDEDNEED--DDDNESGSSSSSSSSADSSDSDSN 701
>sp|P32773|TOA1_YEAST Transcription initiation factor IIA large chain (TFIIA 32 kDa
           subunit)
          Length = 286

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
 Frame = +2

Query: 95  DMSTVENITPVTEEKNN--LKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQ 268
           +++TVENI   +E+K++   +E +EK   + E ++  + + KK++ S L    D++E   
Sbjct: 164 NITTVENIDDESEKKDDEEKEEDVEKTRKEKEQIEQVKLQAKKEKRSAL---LDTDEVGS 220

Query: 269 NGDDAEED 292
             DD+++D
Sbjct: 221 ELDDSDDD 228
>sp|P36044|MNN4_YEAST Protein MNN4
          Length = 1178

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 24/105 (22%), Positives = 40/105 (38%)
 Frame = +2

Query: 131  EEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXX 310
            EE+   KE  EKK  + E     E E KK++  +    K+ EEK +  ++ ++ +     
Sbjct: 1047 EEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQEEEEKKKKEEEEK 1106

Query: 311  XXXXXXXXXXXXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENE 445
                            K  E+  K+K+      K  E     E+E
Sbjct: 1107 KKQEEGEKMKNEDEENKKNEDEEKKKNEEEEKKKQEEKNKKNEDE 1151

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 25/99 (25%), Positives = 41/99 (41%)
 Frame = +2

Query: 149  KEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXX 328
            KE  EKK  + E     E E KK++  +    K+ EEK +  ++ ++ Q           
Sbjct: 1045 KEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQ----------- 1093

Query: 329  XXXXXXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENE 445
                     +K  EE  K+K   G   K  E+ ++ +NE
Sbjct: 1094 -----EEEEKKKKEEEEKKKQEEGEKMK-NEDEENKKNE 1126

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 131  EEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQ 268
            E+K N +E  EKK  + +N  N++ E KKQ   +    ++ E+K Q
Sbjct: 1129 EKKKNEEE--EKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEKKKQ 1172
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
           (Galactosyltransferase-associated protein kinase
           p58/GTA) (Cell division cycle 2-like protein kinase 1)
          Length = 784

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 22/90 (24%), Positives = 39/90 (43%)
 Frame = +2

Query: 176 DSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXXXXXXS 355
           D+     +E   ++  LSDL DI DSE K  + + +  +                    S
Sbjct: 247 DNRKPVKEEKVEERDLLSDLQDISDSERKTSSAESSSAES----------------GSGS 290

Query: 356 EKGTEEHVKEKDCNGSSAKVTENGDSAENE 445
           E+  EE  +E++  GS+++ +E  +  E E
Sbjct: 291 EEEEEEEEEEEEEEGSTSEESEEEEEEEEE 320
>sp|P46916|YTXO_BACSU Hypothetical protein ytxO (ORFY)
          Length = 143

 Score = 33.5 bits (75), Expect = 0.50
 Identities = 21/68 (30%), Positives = 37/68 (54%)
 Frame = +2

Query: 92  LDMSTVENITPVTEEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQN 271
           LD+ ++  +  +   K   KE  EK+T D + VD DE ETK +   +  + +DS+  A  
Sbjct: 45  LDVGSIRELPHINAPKEYQKETKEKET-DRKIVD-DEEETKFETTLEPEEERDSKRSAPP 102

Query: 272 GDDAEEDQ 295
            ++ +ED+
Sbjct: 103 YEEEDEDE 110
>sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein RAD52
          Length = 505

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 179 SENVDNDEPETKKQRLSDLNDIKDSEEKAQNG 274
           S  +DND P  K+Q+L++ N I D+ +   NG
Sbjct: 181 SNTIDNDNPAVKRQKLNNQNSIPDTNKVKYNG 212
>sp|Q6DRL5|MBB1A_BRARE Myb-binding protein 1A-like protein
          Length = 1269

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 131 EEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQ 295
           ++K  LKE  E    + E+ DNDE +       +    ++ EE + + DD EED+
Sbjct: 723 DKKRKLKEEDEDDDDEEEDDDNDEGDDDDDDDDEEEGGEEGEESSDSSDDEEEDE 777
>sp|P13469|MODU_DROME DNA-binding protein modulo
          Length = 542

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +2

Query: 77  RVNYCLDMSTVENITPVTEEKNNLKEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSE 256
           RV     +   E + P +  K + K+ +++    SE  ++D  E   ++  D +D +  E
Sbjct: 25  RVTKSTKVQEEETVVPQSPSKKSRKQPVKEVPQFSEEDESDVEEQNDEQPGDDSDFETEE 84

Query: 257 EKAQNGDDAEEDQ 295
                 D+AEED+
Sbjct: 85  AAGLIDDEAEEDE 97
>sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor complex subunit 1
          Length = 585

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 179 SENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDA 283
           S+ VD DEP++KKQRL +     D  +    GDD+
Sbjct: 361 SDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDS 395
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,977,298
Number of Sequences: 369166
Number of extensions: 735499
Number of successful extensions: 4297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4118
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)