Planaria EST Database


DrC_01535

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01535
         (426 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35068|H2B1_TIGCA  Histone H2B.1/H2B.2                         169   2e-42
sp|P35069|H2B3_TIGCA  Histone H2B.3                               169   2e-42
sp|Q76FD7|H2B_DROSE  Histone H2B >gi|122053|sp|P17271|H2B_DR...   168   5e-42
sp|P02283|H2B_DROME  Histone H2B >gi|51701476|sp|Q76FF3|H2B_...   168   5e-42
sp|Q8I1N0|H2B_DROYA  Histone H2B                                  168   5e-42
sp|P19374|H2B_PLADU  Histone H2B                                  167   1e-41
sp|P02284|H2B_PATGR  Histone H2B, gonadal                         166   1e-41
sp|P02281|H2B1_XENLA  Histone H2B.1                               166   1e-41
sp|P21897|H2B_CHITH  Histone H2B                                  166   2e-41
sp|Q75VN4|H2B_RHASC  Histone H2B                                  166   2e-41
>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2
          Length = 123

 Score =  169 bits (428), Expect = 2e-42
 Identities = 85/91 (93%), Positives = 88/91 (96%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIASEASRLAHYNK+STITSREI
Sbjct: 33  ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 92

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P35069|H2B3_TIGCA Histone H2B.3
          Length = 123

 Score =  169 bits (428), Expect = 2e-42
 Identities = 85/91 (93%), Positives = 88/91 (96%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIASEASRLAHYNK+STITSREI
Sbjct: 33  ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 92

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|Q76FD7|H2B_DROSE Histone H2B
 sp|P17271|H2B_DROHY Histone H2B
          Length = 123

 Score =  168 bits (425), Expect = 5e-42
 Identities = 84/91 (92%), Positives = 88/91 (96%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 33  ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02283|H2B_DROME Histone H2B
 sp|Q76FF3|H2B_DROTE Histone H2B
 sp|P59782|H2B_DROSI Histone H2B
 sp|Q76FE9|H2B_DROOR Histone H2B
 sp|Q76FE5|H2B_DROMA Histone H2B
 sp|P59781|H2B_DROER Histone H2B
          Length = 123

 Score =  168 bits (425), Expect = 5e-42
 Identities = 84/91 (92%), Positives = 88/91 (96%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 33  ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|Q8I1N0|H2B_DROYA Histone H2B
          Length = 123

 Score =  168 bits (425), Expect = 5e-42
 Identities = 84/91 (92%), Positives = 88/91 (96%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 33  ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P19374|H2B_PLADU Histone H2B
          Length = 123

 Score =  167 bits (422), Expect = 1e-41
 Identities = 83/91 (91%), Positives = 88/91 (96%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESY+IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 33  ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02284|H2B_PATGR Histone H2B, gonadal
          Length = 121

 Score =  166 bits (421), Expect = 1e-41
 Identities = 82/91 (90%), Positives = 88/91 (96%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESY+IYIYKVL+QVHPDTG+S KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 31  ESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 90

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 91  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 121
>sp|P02281|H2B1_XENLA Histone H2B.1
          Length = 126

 Score =  166 bits (421), Expect = 1e-41
 Identities = 83/91 (91%), Positives = 87/91 (95%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESYAIY+YKVL+QVHPDTGIS KAMSIMNSFVNDVFERIA EASRLAHYNK+STITSREI
Sbjct: 36  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 95

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT +K
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126
>sp|P21897|H2B_CHITH Histone H2B
          Length = 125

 Score =  166 bits (420), Expect = 2e-41
 Identities = 82/91 (90%), Positives = 88/91 (96%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESYAIYI+KVL+QVHPDTG+S KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 35  ESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 94

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 95  QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
>sp|Q75VN4|H2B_RHASC Histone H2B
          Length = 126

 Score =  166 bits (420), Expect = 2e-41
 Identities = 82/91 (90%), Positives = 87/91 (95%)
 Frame = +3

Query: 72  ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
           ESYAIY+YKVL+QVHPDTGIS KAMSIMNSFVND+FERIA EASRLAHYNK+STITSREI
Sbjct: 36  ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95

Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
           QT VRLLLPGELAKHAVSEGTKAVTKYT +K
Sbjct: 96  QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,432,210
Number of Sequences: 369166
Number of extensions: 805924
Number of successful extensions: 1977
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1975
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)