Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_J02
(426 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2 169 2e-42
sp|P35069|H2B3_TIGCA Histone H2B.3 169 2e-42
sp|Q76FD7|H2B_DROSE Histone H2B >gi|122053|sp|P17271|H2B_DR... 168 5e-42
sp|P02283|H2B_DROME Histone H2B >gi|51701476|sp|Q76FF3|H2B_... 168 5e-42
sp|Q8I1N0|H2B_DROYA Histone H2B 168 5e-42
sp|P19374|H2B_PLADU Histone H2B 167 1e-41
sp|P02284|H2B_PATGR Histone H2B, gonadal 166 1e-41
sp|P02281|H2B1_XENLA Histone H2B.1 166 1e-41
sp|P21897|H2B_CHITH Histone H2B 166 2e-41
sp|Q75VN4|H2B_RHASC Histone H2B 166 2e-41
>sp|P35068|H2B1_TIGCA Histone H2B.1/H2B.2
Length = 123
Score = 169 bits (428), Expect = 2e-42
Identities = 85/91 (93%), Positives = 88/91 (96%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIASEASRLAHYNK+STITSREI
Sbjct: 33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 92
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P35069|H2B3_TIGCA Histone H2B.3
Length = 123
Score = 169 bits (428), Expect = 2e-42
Identities = 85/91 (93%), Positives = 88/91 (96%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIASEASRLAHYNK+STITSREI
Sbjct: 33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREI 92
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|Q76FD7|H2B_DROSE Histone H2B
sp|P17271|H2B_DROHY Histone H2B
Length = 123
Score = 168 bits (425), Expect = 5e-42
Identities = 84/91 (92%), Positives = 88/91 (96%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02283|H2B_DROME Histone H2B
sp|Q76FF3|H2B_DROTE Histone H2B
sp|P59782|H2B_DROSI Histone H2B
sp|Q76FE9|H2B_DROOR Histone H2B
sp|Q76FE5|H2B_DROMA Histone H2B
sp|P59781|H2B_DROER Histone H2B
Length = 123
Score = 168 bits (425), Expect = 5e-42
Identities = 84/91 (92%), Positives = 88/91 (96%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|Q8I1N0|H2B_DROYA Histone H2B
Length = 123
Score = 168 bits (425), Expect = 5e-42
Identities = 84/91 (92%), Positives = 88/91 (96%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESYAIYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P19374|H2B_PLADU Histone H2B
Length = 123
Score = 167 bits (422), Expect = 1e-41
Identities = 83/91 (91%), Positives = 88/91 (96%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESY+IYIYKVL+QVHPDTGIS KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 33 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 92
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 93 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 123
>sp|P02284|H2B_PATGR Histone H2B, gonadal
Length = 121
Score = 166 bits (421), Expect = 1e-41
Identities = 82/91 (90%), Positives = 88/91 (96%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESY+IYIYKVL+QVHPDTG+S KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 31 ESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 90
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 91 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 121
>sp|P02281|H2B1_XENLA Histone H2B.1
Length = 126
Score = 166 bits (421), Expect = 1e-41
Identities = 83/91 (91%), Positives = 87/91 (95%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESYAIY+YKVL+QVHPDTGIS KAMSIMNSFVNDVFERIA EASRLAHYNK+STITSREI
Sbjct: 36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREI 95
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT +K
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126
>sp|P21897|H2B_CHITH Histone H2B
Length = 125
Score = 166 bits (420), Expect = 2e-41
Identities = 82/91 (90%), Positives = 88/91 (96%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESYAIYI+KVL+QVHPDTG+S KAMSIMNSFVND+FERIA+EASRLAHYNK+STITSREI
Sbjct: 35 ESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREI 94
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT SK
Sbjct: 95 QTAVRLLLPGELAKHAVSEGTKAVTKYTSSK 125
>sp|Q75VN4|H2B_RHASC Histone H2B
Length = 126
Score = 166 bits (420), Expect = 2e-41
Identities = 82/91 (90%), Positives = 87/91 (95%)
Frame = +3
Query: 72 ESYAIYIYKVLRQVHPDTGISGKAMSIMNSFVNDVFERIASEASRLAHYNKKSTITSREI 251
ESYAIY+YKVL+QVHPDTGIS KAMSIMNSFVND+FERIA EASRLAHYNK+STITSREI
Sbjct: 36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREI 95
Query: 252 QTGVRLLLPGELAKHAVSEGTKAVTKYTGSK 344
QT VRLLLPGELAKHAVSEGTKAVTKYT +K
Sbjct: 96 QTAVRLLLPGELAKHAVSEGTKAVTKYTSAK 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,432,210
Number of Sequences: 369166
Number of extensions: 805924
Number of successful extensions: 1977
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1975
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)