Planaria EST Database


DrC_01519

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01519
         (534 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00610|CLH1_HUMAN  Clathrin heavy chain 1 (CLH-17)             279   3e-75
sp|P11442|CLH_RAT  Clathrin heavy chain                           279   3e-75
sp|Q68FD5|CLH_MOUSE  Clathrin heavy chain                         279   3e-75
sp|P49951|CLH_BOVIN  Clathrin heavy chain                         279   3e-75
sp|P29742|CLH_DROME  Clathrin heavy chain                         266   2e-71
sp|P53675|CLH2_HUMAN  Clathrin heavy chain 2 (CLH-22)             255   5e-68
sp|P34574|CLH_CAEEL  Probable clathrin heavy chain                250   1e-66
sp|P25870|CLH_DICDI  Clathrin heavy chain                         212   5e-55
sp|Q10161|CLH_SCHPO  Probable clathrin heavy chain                189   3e-48
sp|P22137|CLH_YEAST  Clathrin heavy chain                         166   3e-41
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 (CLH-17)
          Length = 1675

 Score =  279 bits (714), Expect = 3e-75
 Identities = 133/176 (75%), Positives = 156/176 (88%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            SQLA AQL +G +KEA+DSY+KA DPS YM+VV+A     N+E+LV+YLQMARKKARE++
Sbjct: 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY 1168

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            +ETEL +A AKTNRLA+LEEFI+GPN+A++ QV DRC+DEK+YDAAKLLYNNVSN+ RLA
Sbjct: 1169 VETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA 1228

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
             TLVHLGEY AAVD ARKANSTRTWKEVCFACVD +EFRLAQM G+HIVVHADELE
Sbjct: 1229 STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE 1284
>sp|P11442|CLH_RAT Clathrin heavy chain
          Length = 1675

 Score =  279 bits (714), Expect = 3e-75
 Identities = 133/176 (75%), Positives = 156/176 (88%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            SQLA AQL +G +KEA+DSY+KA DPS YM+VV+A     N+E+LV+YLQMARKKARE++
Sbjct: 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY 1168

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            +ETEL +A AKTNRLA+LEEFI+GPN+A++ QV DRC+DEK+YDAAKLLYNNVSN+ RLA
Sbjct: 1169 VETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA 1228

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
             TLVHLGEY AAVD ARKANSTRTWKEVCFACVD +EFRLAQM G+HIVVHADELE
Sbjct: 1229 STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE 1284
>sp|Q68FD5|CLH_MOUSE Clathrin heavy chain
          Length = 1675

 Score =  279 bits (714), Expect = 3e-75
 Identities = 133/176 (75%), Positives = 156/176 (88%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            SQLA AQL +G +KEA+DSY+KA DPS YM+VV+A     N+E+LV+YLQMARKKARE++
Sbjct: 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANASGNWEELVKYLQMARKKARESY 1168

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            +ETEL +A AKTNRLA+LEEFI+GPN+A++ QV DRC+DEK+YDAAKLLYNNVSN+ RLA
Sbjct: 1169 VETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA 1228

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
             TLVHLGEY AAVD ARKANSTRTWKEVCFACVD +EFRLAQM G+HIVVHADELE
Sbjct: 1229 STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE 1284
>sp|P49951|CLH_BOVIN Clathrin heavy chain
          Length = 1675

 Score =  279 bits (714), Expect = 3e-75
 Identities = 133/176 (75%), Positives = 156/176 (88%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            SQLA AQL +G +KEA+DSY+KA DPS YM+VV+A     N+E+LV+YLQMARKKARE++
Sbjct: 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY 1168

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            +ETEL +A AKTNRLA+LEEFI+GPN+A++ QV DRC+DEK+YDAAKLLYNNVSN+ RLA
Sbjct: 1169 VETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLA 1228

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
             TLVHLGEY AAVD ARKANSTRTWKEVCFACVD +EFRLAQM G+HIVVHADELE
Sbjct: 1229 STLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE 1284
>sp|P29742|CLH_DROME Clathrin heavy chain
          Length = 1678

 Score =  266 bits (680), Expect = 2e-71
 Identities = 128/176 (72%), Positives = 153/176 (86%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            SQLA AQL +G +KEA+DSY+KA DPS Y+ VV+   +  +++DLVRYLQMARKKARE++
Sbjct: 1110 SQLAKAQLQQGLVKEAIDSYIKADDPSAYVDVVDVASKVESWDDLVRYLQMARKKARESY 1169

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            IE+EL YA A+T RLADLEEFISGPNHA++ ++ +RCF + +YDAAKLLYNNVSN+ARLA
Sbjct: 1170 IESELIYAYARTGRLADLEEFISGPNHADIQKIGNRCFSDGMYDAAKLLYNNVSNFARLA 1229

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
            ITLV+L E+  AVDSARKANSTRTWKEVCFACVD EEFRLAQM G+HIVVHADELE
Sbjct: 1230 ITLVYLKEFQGAVDSARKANSTRTWKEVCFACVDAEEFRLAQMCGLHIVVHADELE 1285
>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 (CLH-22)
          Length = 1640

 Score =  255 bits (651), Expect = 5e-68
 Identities = 116/176 (65%), Positives = 155/176 (88%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            SQLA AQL +  +KEA++SY++  DPS Y++VV++  R NN+EDLV++LQMARKK RE++
Sbjct: 1109 SQLAQAQLQKDLVKEAINSYIRGDDPSSYLEVVQSASRSNNWEDLVKFLQMARKKGRESY 1168

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            IETEL +A AKT+R+++LE+FI+GPN+A++ QV DRC++E +Y+AAKLLY+NVSN+ARLA
Sbjct: 1169 IETELIFALAKTSRVSELEDFINGPNNAHIQQVGDRCYEEGMYEAAKLLYSNVSNFARLA 1228

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
             TLVHLGEY AAVD++RKA+STRTWKEVCFAC+D +EFR AQ+ G+HIV+HADELE
Sbjct: 1229 STLVHLGEYQAAVDNSRKASSTRTWKEVCFACMDGQEFRFAQLCGLHIVIHADELE 1284

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +2

Query: 242  EFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVS-NYARLAITLVHLGEYHAAVDSARK 418
            E+IS  ++ +   +A       LY+ A  +++    N + + + + H+G    A + A +
Sbjct: 1042 EYISRLDNYDALDIASIAVSSALYEEAFTVFHKFDMNASAIQVLIEHIGNLDRAYEFAER 1101

Query: 419  ANSTRTWKEVCFA 457
             N    W ++  A
Sbjct: 1102 CNEPAVWSQLAQA 1114
>sp|P34574|CLH_CAEEL Probable clathrin heavy chain
          Length = 1681

 Score =  250 bits (639), Expect = 1e-66
 Identities = 116/176 (65%), Positives = 148/176 (84%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            + LA AQL +  +KEAVDS++KA DP  YM+VV    +  ++EDLVRYLQMARKK+RE++
Sbjct: 1111 ASLAKAQLQQNLVKEAVDSFIKADDPGAYMEVVNKCSQTEHWEDLVRYLQMARKKSRESY 1170

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            IETEL +A AKT RL +LEEFI+GPNHA + Q+ DRCFD  ++D+AK+L+NNVSN+A+L+
Sbjct: 1171 IETELVFALAKTGRLTELEEFIAGPNHAQIGQIGDRCFDNGMFDSAKILFNNVSNFAKLS 1230

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
            +TLV LGEY  AVD+ARKANST+TWK+VCF+CV+N EFRLAQM G+HIVVHADELE
Sbjct: 1231 VTLVRLGEYQGAVDAARKANSTKTWKQVCFSCVENGEFRLAQMCGLHIVVHADELE 1286
>sp|P25870|CLH_DICDI Clathrin heavy chain
          Length = 1694

 Score =  212 bits (539), Expect = 5e-55
 Identities = 99/176 (56%), Positives = 137/176 (77%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            S+L +AQL    +KE ++S++KA D   Y +VV A +R++ YEDLV++LQM RKK +E  
Sbjct: 1110 SKLGVAQLKAEMVKECIESFIKANDTEHYQEVVAAAERKDEYEDLVKFLQMCRKKIKEPA 1169

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            IE+EL +A AK N+LA++E+FI+ PN A++  V DRCF+  LY+AAK+LY N+SN++RL 
Sbjct: 1170 IESELIFAYAKVNKLAEMEDFINSPNSAHIQVVGDRCFENGLYEAAKVLYTNISNFSRLT 1229

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
              LV LG+Y AAVD+ARKANST+TWKEV  AC+D +EFRLAQ+ G++I+VH DELE
Sbjct: 1230 SCLVKLGQYQAAVDAARKANSTKTWKEVSAACIDAKEFRLAQVCGINIIVHGDELE 1285
>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain
          Length = 1666

 Score =  189 bits (481), Expect = 3e-48
 Identities = 92/175 (52%), Positives = 127/175 (72%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            S+LA AQL    I +A++SYLKA DPS Y +V+E   R   YE+L++YL MAR K  E  
Sbjct: 1105 SRLAKAQLDGIRIPDAIESYLKADDPSNYSEVIELASRAGKYEELIKYLLMARSKMHEPD 1164

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            +++ L  A AKTN+L ++E F+ G N A+V  V D CF+ K Y+AAKL+Y+++SN++ LA
Sbjct: 1165 VDSALLIAYAKTNQLTEMETFLIGSNVADVKAVGDECFESKNYEAAKLMYSSISNWSMLA 1224

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADEL 529
             TLV+LGEY  AVD ARKANS + WK+V  AC+D  EFRLAQ+ G++++VHA+EL
Sbjct: 1225 TTLVYLGEYQGAVDCARKANSIKVWKQVGTACIDKREFRLAQICGLNLIVHAEEL 1279
>sp|P22137|CLH_YEAST Clathrin heavy chain
          Length = 1653

 Score =  166 bits (421), Expect = 3e-41
 Identities = 80/176 (45%), Positives = 125/176 (71%)
 Frame = +2

Query: 5    SQLALAQLSEGFIKEAVDSYLKAGDPSQYMKVVEAGKRENNYEDLVRYLQMARKKARETF 184
            SQ+  AQL    I +A++SY+KA DPS Y  V++  ++   YE+L+ +L MARK  +E  
Sbjct: 1115 SQIGTAQLDGLRIPDAIESYIKAEDPSNYENVIDIAEQAGKYEELIPFLLMARKTLKEPK 1174

Query: 185  IETELAYACAKTNRLADLEEFISGPNHANVTQVADRCFDEKLYDAAKLLYNNVSNYARLA 364
            I+  L  A A+ N++ ++E  ++G N AN+  V D+ F+ K Y AA+L Y+ VSNY++LA
Sbjct: 1175 IDGALILAYAELNKIHEIENLLAGSNVANLDHVGDKLFENKEYKAARLCYSAVSNYSKLA 1234

Query: 365  ITLVHLGEYHAAVDSARKANSTRTWKEVCFACVDNEEFRLAQMSGMHIVVHADELE 532
             TLV+LG+Y AAVD+ARKA++ + WK V  AC++ +EF+LAQ+ G++++VHA+EL+
Sbjct: 1235 STLVYLGDYQAAVDTARKASNIKVWKLVNDACIEKKEFKLAQICGLNLIVHAEELD 1290
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,717,421
Number of Sequences: 369166
Number of extensions: 947441
Number of successful extensions: 2362
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2362
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)