Planaria EST Database


DrC_01511

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01511
         (825 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39702|VPS8_YEAST  Vacuolar protein sorting-associated pr...    34   0.43 
sp|Q9DD48|MKRN2_SERQU  Makorin-2 (Zinc finger protein YGHLC3...    33   0.73 
sp|Q9ERV1|MKRN2_MOUSE  Makorin-2                                   33   0.73 
sp|P51835|FTSY_BACSU  Cell division protein ftsY homolog           33   0.95 
sp|P06167|HEMA_PI3B  Hemagglutinin-neuraminidase                   33   1.2  
sp|Q9H000|MKRN2_HUMAN  Makorin-2 (RING finger protein 62)          32   1.6  
sp|P27801|PEP3_YEAST  Vacuolar membrane protein PEP3               32   1.6  
sp|Q980L3|SYH_SULSO  Histidyl-tRNA synthetase (Histidine--tR...    32   1.6  
sp|Q9UHC7|MKRN1_HUMAN  Makorin-1 (RING finger protein 61)          32   2.1  
sp|Q9VGI8|BLM_DROME  Bloom's syndrome protein homolog (Dmblm...    32   2.1  
>sp|P39702|VPS8_YEAST Vacuolar protein sorting-associated protein VPS8
          Length = 1274

 Score = 34.3 bits (77), Expect = 0.43
 Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 23/244 (9%)
 Frame = -3

Query: 805  HEGYIELLVGICDVVKLIQIAL---QTSNFQILERIK----DCVF---NSKNSFQQAIER 656
            HE      + + D++  I+  L   +T+   +LE ++    DC       K+ +   I  
Sbjct: 1023 HERLESFNLAVRDLLSFIEQCLNEGKTNISTLLESLRRAFDDCNSAGTEKKSCWILLITF 1082

Query: 655  LILLYRKY--HYDHCICCNRIIENRFTD---PQPVLFKDIGELIFNKLIDKNNHQEIHHN 491
            LI LY KY  H +    CN++++  F      +    KD G   +  +     HQ++   
Sbjct: 1083 LITLYGKYPSHDERKDLCNKLLQEAFLGLVRSKSSSQKDSGGEFWEIMSSVLEHQDV--- 1139

Query: 490  IIKMLNKNEVDQVKEYLIISIHNIINTRKITVRNQMFNFIPNEINQVEESSKLTEMFLNI 311
               +L K  V  +K+ L+    N+ NT K+     +   I   I   + S  L + +   
Sbjct: 1140 ---ILMK--VQDLKQLLL----NVFNTYKL--ERSLSELIQKIIE--DSSQDLVQQYRKF 1186

Query: 310  YGMSYS------ELCGEN-WGKILSQNMYCDICGAVLIDKMLTSN-ELNIVSFSCSHTFH 155
                +S      E+CG+  WG  L   ++           M++ + +  +V F C H FH
Sbjct: 1187 LSEGWSIHTDDCEICGKKIWGAGLDPLLFLAWENVQRHQDMISVDLKTPLVIFKCHHGFH 1246

Query: 154  RKCL 143
            + CL
Sbjct: 1247 QTCL 1250
>sp|Q9DD48|MKRN2_SERQU Makorin-2 (Zinc finger protein YGHLC3HC4)
          Length = 423

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 262 LSQNMYCDICGAVLIDKMLTSNELNIVSFSCSHTFHRKCLRE 137
           LSQ+  C IC  V++ K   S+    +  SC HTF   C+R+
Sbjct: 229 LSQDKVCSICMEVVVQKANPSDRRFGILSSCCHTFCLACIRK 270
>sp|Q9ERV1|MKRN2_MOUSE Makorin-2
          Length = 416

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 259 SQNMYCDICGAVLIDKMLTSNELNIVSFSCSHTFHRKCLRE 137
           SQ+  C IC  V+++K   S     +  +CSHT+   C+R+
Sbjct: 233 SQDKVCSICMEVILEKASASERRFGILSNCSHTYCLSCIRQ 273
>sp|P51835|FTSY_BACSU Cell division protein ftsY homolog
          Length = 329

 Score = 33.1 bits (74), Expect = 0.95
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
 Frame = -3

Query: 751 QIALQTSNFQILERIKDCVFNSKNSFQQAIERLILLYRKYHYDHCICCNRIIENRFTDPQ 572
           +I  QT +  + E+ KD +  ++NSFQ  +  L+  YRK           + E+ F + +
Sbjct: 10  KITKQTDS--VSEKFKDGLEKTRNSFQNKVNDLVSRYRK-----------VDEDFFEELE 56

Query: 571 PVLFK-DIGELIFNKLIDKNNHQEIHHNIIKMLNKNEVDQVKEYLIISIHN 422
            VL   D+G     +LID+   +    NI    +  EV  V    ++ I+N
Sbjct: 57  EVLISADVGFTTVMELIDELKKEVKRRNI---QDPKEVQSVISEKLVEIYN 104
>sp|P06167|HEMA_PI3B Hemagglutinin-neuraminidase
          Length = 572

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -3

Query: 544 LIFNKLIDKNNH-----QEIHHNIIKMLNKNEVDQVKEYLIISIHNIINTRKITVRNQMF 380
           +I   LI +NNH     QEI      +  K  + +  + +  SI + INTR +T+++ + 
Sbjct: 50  MILINLIQENNHNKLMLQEIRKEFAAIDTK--IQKTSDDIGTSIQSGINTRLLTIQSHVQ 107

Query: 379 NFIPNEINQ 353
           N+IP  + Q
Sbjct: 108 NYIPLSLTQ 116
>sp|Q9H000|MKRN2_HUMAN Makorin-2 (RING finger protein 62)
          Length = 416

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 259 SQNMYCDICGAVLIDKMLTSNELNIVSFSCSHTFHRKCLRE 137
           SQ+  C IC  V+++K   S     +  +C+HT+   C+R+
Sbjct: 233 SQDKVCSICMEVILEKASASERRFGILSNCNHTYCLSCIRQ 273
>sp|P27801|PEP3_YEAST Vacuolar membrane protein PEP3
          Length = 918

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 35/138 (25%), Positives = 52/138 (37%)
 Frame = -3

Query: 556  DIGELIFNKLIDKNNHQEIHHNIIKMLNKNEVDQVKEYLIISIHNIINTRKITVRNQMFN 377
            DI +LI   L D N    I   +        +  +KE LI  + N              N
Sbjct: 740  DIKQLIRTILNDSNEILTIKDLLPFFNEYTTIANLKEELIKFLEN-------------HN 786

Query: 376  FIPNEINQVEESSKLTEMFLNIYGMSYSELCGENWGKILSQNMYCDICGAVLIDKMLTSN 197
               NEI++   +SK  ++ +N     ++E+      +IL     CD CG  L  K     
Sbjct: 787  MKMNEISEDIINSKNLKVEINTEISKFNEIY-----RILEPGKSCDECGKFLQIK----- 836

Query: 196  ELNIVSFSCSHTFHRKCL 143
                + F C H FH  C+
Sbjct: 837  --KFIVFPCGHCFHWNCI 852
>sp|Q980L3|SYH_SULSO Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
          Length = 426

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = -3

Query: 541 IFNKLIDKNNHQE-IHHNIIKMLNKNEVDQVKEYLIISIHNIINTRKITVRNQMFNFIPN 365
           IF K++DK N ++ +  +++ +++KN+VD   E L+I   NI N   +   N +      
Sbjct: 166 IFRKIMDKYNIEDNLQEHVLHLIDKNKVD---EALVILEKNIKNKDIMDFLNMILTKKEA 222

Query: 364 EINQVEESSKLTEM 323
           ++  +E  ++L E+
Sbjct: 223 KLEDIESLAELEEV 236
>sp|Q9UHC7|MKRN1_HUMAN Makorin-1 (RING finger protein 61)
          Length = 482

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 259 SQNMYCDICGAVLIDKMLTSNELNIVSFSCSHTFHRKCLRE 137
           S++M C IC  V+ +K   S     +  +C+HT+  KC+R+
Sbjct: 276 SKDMVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRK 316
>sp|Q9VGI8|BLM_DROME Bloom's syndrome protein homolog (Dmblm) (Mutagen-sensitive protein
            309) (RecQ helicase homolog)
          Length = 1487

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = -3

Query: 532  KLIDKNNHQEIHHNIIKMLNKNEVDQVKEYLII 434
            K+ID N+H+  HH ++K  +KN+V ++   ++I
Sbjct: 1182 KIIDFNHHKTPHHGVLKDWDKNDVHRLLRKMVI 1214
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,108,731
Number of Sequences: 369166
Number of extensions: 1476353
Number of successful extensions: 4321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4319
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)