Planaria EST Database


DrC_01509

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01509
         (260 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07390|PT494_YEAST  COX3 mRNA-specific translational acti...    30   1.3  
sp|O70570|PIGR_MOUSE  Polymeric-immunoglobulin receptor prec...    30   1.7  
sp|Q9K802|EZRA_BACHD  Septation ring formation regulator ezrA      30   2.2  
sp|P38141|THI2_YEAST  Thiamine biosynthesis regulatory protein     29   3.8  
sp|P11145|HSP74_TRYBB  Heat shock 70 kDa protein 4 (HSP70)         28   4.9  
sp|P53707|CS37_CANAL  37 kDa cell surface protein                  28   4.9  
sp|P42498|PHYE_ARATH  Phytochrome E                                28   8.4  
sp|Q9UG22|GIMA2_HUMAN  GTPase, IMAP family member 2 (Immunit...    28   8.4  
>sp|P07390|PT494_YEAST COX3 mRNA-specific translational activator PET494
          Length = 489

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +2

Query: 53  IQLMIKGLEVESFYLNMKNLTTNQDYWAEQWDKKLNQITTIMEQTINYITENWHK 217
           ++L+ KG EV+  +  +       D + + W+K  ++I T  E+  N+   NW K
Sbjct: 227 VELLTKGKEVQGTHRRI-------DVFYDLWNKNFDKIVTSPEKVQNFQLPNWSK 274
>sp|O70570|PIGR_MOUSE Polymeric-immunoglobulin receptor precursor (Poly-Ig receptor)
           (PIGR) [Contains: Secretory component]
          Length = 771

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 26  KVEKFFMGNIQLMIKGLEVESFYLNMKNLTTN 121
           KV   ++G  +L +KG ++  FY+N+ +LT N
Sbjct: 182 KVNPSYIGRAKLFMKGTDLTVFYVNISHLTHN 213
>sp|Q9K802|EZRA_BACHD Septation ring formation regulator ezrA
          Length = 561

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +2

Query: 50  NIQLMIKGLEVESFYLNMKNLTTNQDYWAEQWDKKLNQITTI----MEQTINYITENWHK 217
           N++  ++ +E   F+L    + +  +   E+  + L Q+T +    ME+ IN+I E+  +
Sbjct: 233 NLKNGLRDMEEAGFFLETFAIDSQMERLEEKRVELLEQLTVLECNGMEEEINFIEESMEQ 292

Query: 218 QLEIDAEDFSIKN 256
             E+  ++   KN
Sbjct: 293 MFELLEKEVEAKN 305
>sp|P38141|THI2_YEAST Thiamine biosynthesis regulatory protein
          Length = 450

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 116 TNQDYWAEQWDKKLNQITTIMEQTINYITENWHK 217
           TN+DY  ++ DKKL+++  ++E  I+ +  N  K
Sbjct: 158 TNRDYTQKRIDKKLDELLNMVENDISVVNLNCSK 191
>sp|P11145|HSP74_TRYBB Heat shock 70 kDa protein 4 (HSP70)
          Length = 661

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +2

Query: 80  VESFYLNMKNLTTNQDYWAEQWDKKLNQITTIMEQTINYITENWHKQLE 226
           +E++  +MKN   + +   +  D   N +TT +E+ + ++ +N    LE
Sbjct: 545 LENYAFSMKNTINDPNVAGKLDDADKNAVTTAVEEALRWLNDNQEASLE 593
>sp|P53707|CS37_CANAL 37 kDa cell surface protein
          Length = 321

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 134 AEQWDKKLNQITTIMEQTINYITENWHKQLE 226
           A++ DKK N+      + I+Y +  WHK  E
Sbjct: 192 ADELDKKANEAINWTNKQIDYASAEWHKHYE 222
>sp|P42498|PHYE_ARATH Phytochrome E
          Length = 1112

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 65   IKGLEVESFYLNMKNLTTNQDYWAEQWDKKLNQITTIMEQT-INYITENWHKQLEIDAED 241
            + G+      L    ++ +Q  + E  D    QITTI+E T +  I E    +L+++ E+
Sbjct: 886  LNGIRFAHKLLESSEISASQRQFLETSDACEKQITTIIESTDLKSIEEG---KLQLETEE 942

Query: 242  FSIKN 256
            F ++N
Sbjct: 943  FRLEN 947
>sp|Q9UG22|GIMA2_HUMAN GTPase, IMAP family member 2 (Immunity-associated protein 2)
           (hIMAP2)
          Length = 337

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 205 LCNIIYCLLHNSCNLIQFFIPLFCPIVLICSKILHV 98
           +CN+  CLL + CN       LFC ++ I  K L +
Sbjct: 294 MCNLFCCLLFSMCN-------LFCSLLFIIPKKLMI 322
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,448,151
Number of Sequences: 369166
Number of extensions: 535956
Number of successful extensions: 1325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)