Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_C17
(260 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07390|PT494_YEAST COX3 mRNA-specific translational acti... 30 1.3
sp|O70570|PIGR_MOUSE Polymeric-immunoglobulin receptor prec... 30 1.7
sp|Q9K802|EZRA_BACHD Septation ring formation regulator ezrA 30 2.2
sp|P38141|THI2_YEAST Thiamine biosynthesis regulatory protein 29 3.8
sp|P11145|HSP74_TRYBB Heat shock 70 kDa protein 4 (HSP70) 28 4.9
sp|P53707|CS37_CANAL 37 kDa cell surface protein 28 4.9
sp|P42498|PHYE_ARATH Phytochrome E 28 8.4
sp|Q9UG22|GIMA2_HUMAN GTPase, IMAP family member 2 (Immunit... 28 8.4
>sp|P07390|PT494_YEAST COX3 mRNA-specific translational activator PET494
Length = 489
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 53 IQLMIKGLEVESFYLNMKNLTTNQDYWAEQWDKKLNQITTIMEQTINYITENWHK 217
++L+ KG EV+ + + D + + W+K ++I T E+ N+ NW K
Sbjct: 227 VELLTKGKEVQGTHRRI-------DVFYDLWNKNFDKIVTSPEKVQNFQLPNWSK 274
>sp|O70570|PIGR_MOUSE Polymeric-immunoglobulin receptor precursor (Poly-Ig receptor)
(PIGR) [Contains: Secretory component]
Length = 771
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 26 KVEKFFMGNIQLMIKGLEVESFYLNMKNLTTN 121
KV ++G +L +KG ++ FY+N+ +LT N
Sbjct: 182 KVNPSYIGRAKLFMKGTDLTVFYVNISHLTHN 213
>sp|Q9K802|EZRA_BACHD Septation ring formation regulator ezrA
Length = 561
Score = 29.6 bits (65), Expect = 2.2
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +2
Query: 50 NIQLMIKGLEVESFYLNMKNLTTNQDYWAEQWDKKLNQITTI----MEQTINYITENWHK 217
N++ ++ +E F+L + + + E+ + L Q+T + ME+ IN+I E+ +
Sbjct: 233 NLKNGLRDMEEAGFFLETFAIDSQMERLEEKRVELLEQLTVLECNGMEEEINFIEESMEQ 292
Query: 218 QLEIDAEDFSIKN 256
E+ ++ KN
Sbjct: 293 MFELLEKEVEAKN 305
>sp|P38141|THI2_YEAST Thiamine biosynthesis regulatory protein
Length = 450
Score = 28.9 bits (63), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 116 TNQDYWAEQWDKKLNQITTIMEQTINYITENWHK 217
TN+DY ++ DKKL+++ ++E I+ + N K
Sbjct: 158 TNRDYTQKRIDKKLDELLNMVENDISVVNLNCSK 191
>sp|P11145|HSP74_TRYBB Heat shock 70 kDa protein 4 (HSP70)
Length = 661
Score = 28.5 bits (62), Expect = 4.9
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 80 VESFYLNMKNLTTNQDYWAEQWDKKLNQITTIMEQTINYITENWHKQLE 226
+E++ +MKN + + + D N +TT +E+ + ++ +N LE
Sbjct: 545 LENYAFSMKNTINDPNVAGKLDDADKNAVTTAVEEALRWLNDNQEASLE 593
>sp|P53707|CS37_CANAL 37 kDa cell surface protein
Length = 321
Score = 28.5 bits (62), Expect = 4.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 134 AEQWDKKLNQITTIMEQTINYITENWHKQLE 226
A++ DKK N+ + I+Y + WHK E
Sbjct: 192 ADELDKKANEAINWTNKQIDYASAEWHKHYE 222
>sp|P42498|PHYE_ARATH Phytochrome E
Length = 1112
Score = 27.7 bits (60), Expect = 8.4
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 65 IKGLEVESFYLNMKNLTTNQDYWAEQWDKKLNQITTIMEQT-INYITENWHKQLEIDAED 241
+ G+ L ++ +Q + E D QITTI+E T + I E +L+++ E+
Sbjct: 886 LNGIRFAHKLLESSEISASQRQFLETSDACEKQITTIIESTDLKSIEEG---KLQLETEE 942
Query: 242 FSIKN 256
F ++N
Sbjct: 943 FRLEN 947
>sp|Q9UG22|GIMA2_HUMAN GTPase, IMAP family member 2 (Immunity-associated protein 2)
(hIMAP2)
Length = 337
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 205 LCNIIYCLLHNSCNLIQFFIPLFCPIVLICSKILHV 98
+CN+ CLL + CN LFC ++ I K L +
Sbjct: 294 MCNLFCCLLFSMCN-------LFCSLLFIIPKKLMI 322
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,448,151
Number of Sequences: 369166
Number of extensions: 535956
Number of successful extensions: 1325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)