Planaria EST Database


DrC_01504

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01504
         (596 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q94VF8|NU1M_VARJO  NADH-ubiquinone oxidoreductase chain 1...    34   0.24 
sp|Q94VI4|NU1M_VARFL  NADH-ubiquinone oxidoreductase chain 1...    33   0.54 
sp|P12099|NUIC_ORYSA  NAD(P)H-quinone oxidoreductase chain I...    33   0.71 
sp|Q94VK0|NU1M_VARBA  NADH-ubiquinone oxidoreductase chain 1...    33   0.71 
sp|P56755|NUIC_ARATH  NAD(P)H-quinone oxidoreductase chain I...    33   0.71 
sp|Q9BBP0|NUIC_LOTJA  NAD(P)H-quinone oxidoreductase chain I...    32   1.6  
sp|Q97MD1|LDH1_CLOAB  L-lactate dehydrogenase 1 (L-LDH 1)          31   2.1  
sp|Q94VC3|NU1M_VARRU  NADH-ubiquinone oxidoreductase chain 1...    31   2.1  
sp|P46722|NUIC_MAIZE  NAD(P)H-quinone oxidoreductase chain I...    30   3.5  
sp|Q6ENA3|NUIC_ORYNI  NAD(P)H-quinone oxidoreductase chain I...    30   3.5  
>sp|Q94VF8|NU1M_VARJO NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
           1)
          Length = 320

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 25/103 (24%), Positives = 48/103 (46%)
 Frame = -2

Query: 508 PSKYSI*NMNLQMLNILHLESMRYNTIQY*LWTMSNENIFLGSEKFSNIFHNVLQYRLSI 329
           P  Y++ N+NL  L+IL + SM  N+I +  W  +++   +GS +        +   +S 
Sbjct: 93  PMPYTLANLNLGFLSILAISSMAVNSILWAGWASNSKYALIGSLR-------AVAQTISY 145

Query: 328 EYLLSSQDTYP*LIFLSFLLQSDIYDASYLYPMDRHLYIQSRS 200
           E  L        +I LS L+ +  +    L    +H+++ + S
Sbjct: 146 EVTLG-------IILLSILILTGGFTMQLLTATQKHIWLLATS 181
>sp|Q94VI4|NU1M_VARFL NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
           1)
          Length = 319

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = -2

Query: 508 PSKYSI*NMNLQMLNILHLESMRYNTIQY*LWTMSNENIFLGS 380
           P  Y++ N+NL +L+IL + SM  N+I +  W  +++   +GS
Sbjct: 92  PMPYALTNLNLGLLSILAISSMAVNSILWAGWASNSKYAIIGS 134
>sp|P12099|NUIC_ORYSA NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
           dehydrogenase, chain I) (NADH-plastoquinone
           oxidoreductase subunit I) (Protein frxB)
          Length = 178

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 26/124 (20%), Positives = 47/124 (37%)
 Frame = +1

Query: 127 MFYEIQECLGAVSERVYEITSMKFVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRY 306
           MF  +   +G  + R        F+I + +TN  P  I+  +          EK I    
Sbjct: 1   MFPMVTGFMGQQTIRAARYIGQSFIITLSHTNRLPITIHYPY----------EKSITSER 50

Query: 307 PEKKVNIQLINDIAKRCEICLRIFPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSC 486
              +++ +    IA  CE+C+R+ P       W +         ++Y +      F  +C
Sbjct: 51  FRGRIHFEFDKCIA--CEVCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNC 108

Query: 487 FKYC 498
            +YC
Sbjct: 109 VEYC 112
>sp|Q94VK0|NU1M_VARBA NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
           1)
          Length = 321

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 508 PSKYSI*NMNLQMLNILHLESMRYNTIQY*LWTMSNENIFLGS 380
           P  YS+ N+NL +L+IL +  M  N+I +  W  +++   +GS
Sbjct: 94  PMPYSLANLNLGLLSILAISGMAVNSILWAGWASNSKYALIGS 136
>sp|P56755|NUIC_ARATH NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
           dehydrogenase, chain I) (NADH-plastoquinone
           oxidoreductase subunit I)
          Length = 172

 Score = 32.7 bits (73), Expect = 0.71
 Identities = 24/101 (23%), Positives = 40/101 (39%)
 Frame = +1

Query: 196 FVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRYPEKKVNIQLINDIAKRCEICLRI 375
           F+I + +TN  P  I   +          EKLI       +++ +    IA  CE+C+R+
Sbjct: 26  FMITLSHTNRLPVTIQYPY----------EKLITSERFRGRIHFEFDKCIA--CEVCVRV 73

Query: 376 FPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSCFKYC 498
            P       W   T       ++Y +      F  +C +YC
Sbjct: 74  CPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYC 114
>sp|Q9BBP0|NUIC_LOTJA NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
           dehydrogenase, chain I) (NADH-plastoquinone
           oxidoreductase subunit I)
          Length = 161

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/110 (21%), Positives = 40/110 (36%)
 Frame = +1

Query: 169 RVYEITSMKFVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRYPEKKVNIQLINDIA 348
           R        F+I + + N  P  I   +          EKLI       +++ +    IA
Sbjct: 17  RAARYIGQSFMITLSHANRLPVTIQYPY----------EKLITSERFRGRIHFEFDKCIA 66

Query: 349 KRCEICLRIFPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSCFKYC 498
             CE+C+R+ P       W   T       ++Y +      F  +C +YC
Sbjct: 67  --CEVCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCIEYC 114
>sp|Q97MD1|LDH1_CLOAB L-lactate dehydrogenase 1 (L-LDH 1)
          Length = 313

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 406 TWSTTNIVSCCISYFLGEVYLTFVDSCFKYCIWRDVKNETNDEIQKQTETMFS 564
           TWS TNI    ++ +  E      D   KY I+ DVKN     I+K+  T ++
Sbjct: 183 TWSLTNIAGMDVNEYC-EASCKKCDGSLKYKIYDDVKNAAYHVIEKKGATYYA 234
>sp|Q94VC3|NU1M_VARRU NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
           1)
          Length = 318

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 23/103 (22%), Positives = 48/103 (46%)
 Frame = -2

Query: 508 PSKYSI*NMNLQMLNILHLESMRYNTIQY*LWTMSNENIFLGSEKFSNIFHNVLQYRLSI 329
           P  +++ N+NL +L+IL + SM  N+  +  W  +++   +GS +        +   +S 
Sbjct: 91  PMPHALTNLNLGLLSILAISSMAVNSTLWAGWASNSKYALIGSLR-------AVAQTISY 143

Query: 328 EYLLSSQDTYP*LIFLSFLLQSDIYDASYLYPMDRHLYIQSRS 200
           E  L        +I LS L+ +  +    L    +H+++ + S
Sbjct: 144 EVTLG-------IILLSILILTGGFTMQLLTTTQKHIWLLTTS 179
>sp|P46722|NUIC_MAIZE NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
           dehydrogenase, chain I) (NADH-plastoquinone
           oxidoreductase subunit I) (Protein frxB)
          Length = 180

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 24/115 (20%), Positives = 43/115 (37%)
 Frame = +1

Query: 154 GAVSERVYEITSMKFVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRYPEKKVNIQL 333
           G  + R        F+I + +TN  P  I+  +          EK I       +++ + 
Sbjct: 12  GQQTIRAARYIGQSFIITLSHTNRLPITIHYPY----------EKSITSERFRGRIHFEF 61

Query: 334 INDIAKRCEICLRIFPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSCFKYC 498
              IA  CE+C+R+ P       W +         ++Y +      F  +C +YC
Sbjct: 62  DKCIA--CEVCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYC 114
>sp|Q6ENA3|NUIC_ORYNI NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
           dehydrogenase, chain I) (NADH-plastoquinone
           oxidoreductase subunit I)
          Length = 180

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 24/115 (20%), Positives = 43/115 (37%)
 Frame = +1

Query: 154 GAVSERVYEITSMKFVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRYPEKKVNIQL 333
           G  + R        F+I + +TN  P  I+  +          EK I       +++ + 
Sbjct: 12  GQQTIRAARYIGQSFIITLSHTNRLPITIHYPY----------EKSITSERFRGRIHFEF 61

Query: 334 INDIAKRCEICLRIFPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSCFKYC 498
              IA  CE+C+R+ P       W +         ++Y +      F  +C +YC
Sbjct: 62  DKCIA--CEVCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYC 114
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,017,078
Number of Sequences: 369166
Number of extensions: 1297019
Number of successful extensions: 3091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3091
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)