Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_B23
(596 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94VF8|NU1M_VARJO NADH-ubiquinone oxidoreductase chain 1... 34 0.24
sp|Q94VI4|NU1M_VARFL NADH-ubiquinone oxidoreductase chain 1... 33 0.54
sp|P12099|NUIC_ORYSA NAD(P)H-quinone oxidoreductase chain I... 33 0.71
sp|Q94VK0|NU1M_VARBA NADH-ubiquinone oxidoreductase chain 1... 33 0.71
sp|P56755|NUIC_ARATH NAD(P)H-quinone oxidoreductase chain I... 33 0.71
sp|Q9BBP0|NUIC_LOTJA NAD(P)H-quinone oxidoreductase chain I... 32 1.6
sp|Q97MD1|LDH1_CLOAB L-lactate dehydrogenase 1 (L-LDH 1) 31 2.1
sp|Q94VC3|NU1M_VARRU NADH-ubiquinone oxidoreductase chain 1... 31 2.1
sp|P46722|NUIC_MAIZE NAD(P)H-quinone oxidoreductase chain I... 30 3.5
sp|Q6ENA3|NUIC_ORYNI NAD(P)H-quinone oxidoreductase chain I... 30 3.5
>sp|Q94VF8|NU1M_VARJO NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 320
Score = 34.3 bits (77), Expect = 0.24
Identities = 25/103 (24%), Positives = 48/103 (46%)
Frame = -2
Query: 508 PSKYSI*NMNLQMLNILHLESMRYNTIQY*LWTMSNENIFLGSEKFSNIFHNVLQYRLSI 329
P Y++ N+NL L+IL + SM N+I + W +++ +GS + + +S
Sbjct: 93 PMPYTLANLNLGFLSILAISSMAVNSILWAGWASNSKYALIGSLR-------AVAQTISY 145
Query: 328 EYLLSSQDTYP*LIFLSFLLQSDIYDASYLYPMDRHLYIQSRS 200
E L +I LS L+ + + L +H+++ + S
Sbjct: 146 EVTLG-------IILLSILILTGGFTMQLLTATQKHIWLLATS 181
>sp|Q94VI4|NU1M_VARFL NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 319
Score = 33.1 bits (74), Expect = 0.54
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = -2
Query: 508 PSKYSI*NMNLQMLNILHLESMRYNTIQY*LWTMSNENIFLGS 380
P Y++ N+NL +L+IL + SM N+I + W +++ +GS
Sbjct: 92 PMPYALTNLNLGLLSILAISSMAVNSILWAGWASNSKYAIIGS 134
>sp|P12099|NUIC_ORYSA NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
dehydrogenase, chain I) (NADH-plastoquinone
oxidoreductase subunit I) (Protein frxB)
Length = 178
Score = 32.7 bits (73), Expect = 0.71
Identities = 26/124 (20%), Positives = 47/124 (37%)
Frame = +1
Query: 127 MFYEIQECLGAVSERVYEITSMKFVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRY 306
MF + +G + R F+I + +TN P I+ + EK I
Sbjct: 1 MFPMVTGFMGQQTIRAARYIGQSFIITLSHTNRLPITIHYPY----------EKSITSER 50
Query: 307 PEKKVNIQLINDIAKRCEICLRIFPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSC 486
+++ + IA CE+C+R+ P W + ++Y + F +C
Sbjct: 51 FRGRIHFEFDKCIA--CEVCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNC 108
Query: 487 FKYC 498
+YC
Sbjct: 109 VEYC 112
>sp|Q94VK0|NU1M_VARBA NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 321
Score = 32.7 bits (73), Expect = 0.71
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -2
Query: 508 PSKYSI*NMNLQMLNILHLESMRYNTIQY*LWTMSNENIFLGS 380
P YS+ N+NL +L+IL + M N+I + W +++ +GS
Sbjct: 94 PMPYSLANLNLGLLSILAISGMAVNSILWAGWASNSKYALIGS 136
>sp|P56755|NUIC_ARATH NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
dehydrogenase, chain I) (NADH-plastoquinone
oxidoreductase subunit I)
Length = 172
Score = 32.7 bits (73), Expect = 0.71
Identities = 24/101 (23%), Positives = 40/101 (39%)
Frame = +1
Query: 196 FVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRYPEKKVNIQLINDIAKRCEICLRI 375
F+I + +TN P I + EKLI +++ + IA CE+C+R+
Sbjct: 26 FMITLSHTNRLPVTIQYPY----------EKLITSERFRGRIHFEFDKCIA--CEVCVRV 73
Query: 376 FPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSCFKYC 498
P W T ++Y + F +C +YC
Sbjct: 74 CPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYC 114
>sp|Q9BBP0|NUIC_LOTJA NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
dehydrogenase, chain I) (NADH-plastoquinone
oxidoreductase subunit I)
Length = 161
Score = 31.6 bits (70), Expect = 1.6
Identities = 24/110 (21%), Positives = 40/110 (36%)
Frame = +1
Query: 169 RVYEITSMKFVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRYPEKKVNIQLINDIA 348
R F+I + + N P I + EKLI +++ + IA
Sbjct: 17 RAARYIGQSFMITLSHANRLPVTIQYPY----------EKLITSERFRGRIHFEFDKCIA 66
Query: 349 KRCEICLRIFPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSCFKYC 498
CE+C+R+ P W T ++Y + F +C +YC
Sbjct: 67 --CEVCVRVCPIDLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCIEYC 114
>sp|Q97MD1|LDH1_CLOAB L-lactate dehydrogenase 1 (L-LDH 1)
Length = 313
Score = 31.2 bits (69), Expect = 2.1
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 406 TWSTTNIVSCCISYFLGEVYLTFVDSCFKYCIWRDVKNETNDEIQKQTETMFS 564
TWS TNI ++ + E D KY I+ DVKN I+K+ T ++
Sbjct: 183 TWSLTNIAGMDVNEYC-EASCKKCDGSLKYKIYDDVKNAAYHVIEKKGATYYA 234
>sp|Q94VC3|NU1M_VARRU NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 318
Score = 31.2 bits (69), Expect = 2.1
Identities = 23/103 (22%), Positives = 48/103 (46%)
Frame = -2
Query: 508 PSKYSI*NMNLQMLNILHLESMRYNTIQY*LWTMSNENIFLGSEKFSNIFHNVLQYRLSI 329
P +++ N+NL +L+IL + SM N+ + W +++ +GS + + +S
Sbjct: 91 PMPHALTNLNLGLLSILAISSMAVNSTLWAGWASNSKYALIGSLR-------AVAQTISY 143
Query: 328 EYLLSSQDTYP*LIFLSFLLQSDIYDASYLYPMDRHLYIQSRS 200
E L +I LS L+ + + L +H+++ + S
Sbjct: 144 EVTLG-------IILLSILILTGGFTMQLLTTTQKHIWLLTTS 179
>sp|P46722|NUIC_MAIZE NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
dehydrogenase, chain I) (NADH-plastoquinone
oxidoreductase subunit I) (Protein frxB)
Length = 180
Score = 30.4 bits (67), Expect = 3.5
Identities = 24/115 (20%), Positives = 43/115 (37%)
Frame = +1
Query: 154 GAVSERVYEITSMKFVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRYPEKKVNIQL 333
G + R F+I + +TN P I+ + EK I +++ +
Sbjct: 12 GQQTIRAARYIGQSFIITLSHTNRLPITIHYPY----------EKSITSERFRGRIHFEF 61
Query: 334 INDIAKRCEICLRIFPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSCFKYC 498
IA CE+C+R+ P W + ++Y + F +C +YC
Sbjct: 62 DKCIA--CEVCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYC 114
>sp|Q6ENA3|NUIC_ORYNI NAD(P)H-quinone oxidoreductase chain I, chloroplast (NAD(P)H
dehydrogenase, chain I) (NADH-plastoquinone
oxidoreductase subunit I)
Length = 180
Score = 30.4 bits (67), Expect = 3.5
Identities = 24/115 (20%), Positives = 43/115 (37%)
Frame = +1
Query: 154 GAVSERVYEITSMKFVIAIEYTNVYP*DINMTHHICHFEVKRTEKLIKDRYPEKKVNIQL 333
G + R F+I + +TN P I+ + EK I +++ +
Sbjct: 12 GQQTIRAARYIGQSFIITLSHTNRLPITIHYPY----------EKSITSERFRGRIHFEF 61
Query: 334 INDIAKRCEICLRIFPTPERYFRWTWSTTNIVSCCISYFLGEVYLTFVDSCFKYC 498
IA CE+C+R+ P W + ++Y + F +C +YC
Sbjct: 62 DKCIA--CEVCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYC 114
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,017,078
Number of Sequences: 369166
Number of extensions: 1297019
Number of successful extensions: 3091
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3091
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)