Planaria EST Database


DrC_01499

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01499
         (271 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P43571|YFC5_YEAST  Hypothetical 117.8 kDa protein in STE2...    29   3.9  
sp|P31042|CD28_RAT  T-cell-specific surface glycoprotein CD2...    28   8.7  
sp|P31041|CD28_MOUSE  T-cell-specific surface glycoprotein C...    28   8.7  
>sp|P43571|YFC5_YEAST Hypothetical 117.8 kDa protein in STE2-FRS2 intergenic region
          Length = 1029

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +2

Query: 53   CLKSFLLKLINSQRSVFLLSM*IINQL*LYNTTRAIIYAYRS*MNLSLLVVYL 211
            C++  LLKL N+++ + LL+         YN T  ++  + S +N+ +++V+L
Sbjct: 897  CIRVALLKLSNNEQKLNLLN---------YNMTLLLLLLFVSAINIPIIIVFL 940
>sp|P31042|CD28_RAT T-cell-specific surface glycoprotein CD28 precursor
          Length = 218

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 25  YSYKLSTIELSKIVFVKVNKFTAICISTFNVNYQP 129
           YSY L   E    ++  VN    +C+   N  YQP
Sbjct: 43  YSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQP 77
>sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28 precursor
          Length = 218

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 25  YSYKLSTIELSKIVFVKVNKFTAICISTFNVNYQP 129
           YSY L   E    ++  VN    +C+   N  YQP
Sbjct: 43  YSYNLLAKEFRASLYKGVNSDVEVCVGNGNFTYQP 77
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,185,395
Number of Sequences: 369166
Number of extensions: 391577
Number of successful extensions: 932
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)